Wall clock time and date at job start Tue Mar 31 2020 05:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38074 * 120.79864 * 2 1 4 4 C 1.39224 * 119.22346 * 180.27535 * 3 2 1 5 5 N 1.38847 * 119.57001 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99936 * 5.00123 * 5 4 3 7 7 C 1.46492 * 120.00021 * 184.99945 * 5 4 3 8 8 N 1.32488 * 120.85925 * 0.02562 * 4 3 2 9 9 C 1.31761 * 121.74763 * 359.97438 * 8 4 3 10 10 C 1.39242 * 120.68599 * 359.97438 * 9 8 4 11 11 C 1.48283 * 120.45787 * 179.97438 * 10 9 8 12 12 C 1.38957 * 119.62333 * 311.27538 * 11 10 9 13 13 C 1.40818 * 118.75803 * 179.75614 * 12 11 10 14 14 C 1.41528 * 120.98157 * 180.25848 * 13 12 11 15 15 H 1.08004 * 120.00126 * 203.41299 * 14 13 12 16 16 C 1.40039 * 120.00352 * 23.42392 * 14 13 12 17 17 N 1.30736 * 119.99736 * 16.20328 * 16 14 13 18 18 Si 1.86802 * 120.00108 * 196.20939 * 16 14 13 19 19 H 1.48504 * 109.47190 * 89.99372 * 18 16 14 20 20 H 1.48502 * 109.47063 * 209.99409 * 18 16 14 21 21 H 1.48492 * 109.47137 * 329.99728 * 18 16 14 22 22 C 1.41159 * 118.03281 * 0.50144 * 13 12 11 23 23 C 1.37711 * 119.08323 * 359.76164 * 22 13 12 24 24 N 1.31942 * 121.16434 * 359.96963 * 23 22 13 25 25 H 1.09003 * 109.46622 * 268.10120 * 1 2 3 26 26 H 1.08998 * 109.46927 * 28.10484 * 1 2 3 27 27 H 1.08999 * 109.46755 * 148.10770 * 1 2 3 28 28 H 1.08000 * 120.38746 * 0.25713 * 3 2 1 29 29 H 1.09002 * 109.46367 * 60.00028 * 6 5 4 30 30 H 1.08995 * 109.46986 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47225 * 300.00017 * 6 5 4 32 32 H 1.09001 * 109.47328 * 90.00248 * 7 5 4 33 33 H 1.08995 * 109.47614 * 209.99846 * 7 5 4 34 34 H 1.09000 * 109.47415 * 330.00681 * 7 5 4 35 35 H 1.08001 * 119.65487 * 179.97438 * 9 8 4 36 36 H 1.07996 * 120.62001 * 0.02562 * 12 11 10 37 37 H 0.97005 * 119.99530 * 180.02562 * 17 16 14 38 38 H 1.08004 * 120.46157 * 179.77451 * 22 13 12 39 39 H 1.07999 * 119.41447 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1860 0.0000 4 6 3.6057 1.1478 -0.0058 5 7 4.3238 2.3361 -0.0053 6 6 3.6214 3.6164 0.1119 7 6 5.7839 2.3096 -0.1220 8 7 4.2537 -0.0078 -0.0119 9 6 3.6156 -1.1606 -0.0121 10 6 2.2238 -1.2023 -0.0054 11 6 1.5108 -2.5025 -0.0063 12 6 1.8748 -3.4848 -0.9192 13 6 1.1890 -4.7146 -0.9005 14 6 1.5246 -5.7497 -1.8054 15 1 0.7967 -6.5085 -2.0521 16 6 2.8007 -5.7904 -2.3808 17 7 3.7735 -5.0863 -1.8639 18 14 3.1128 -6.8505 -3.8869 19 1 2.8563 -6.0547 -5.1142 20 1 4.5240 -7.3130 -3.8828 21 1 2.2064 -8.0263 -3.8610 22 6 0.1534 -4.8824 0.0440 23 6 -0.1404 -3.8493 0.9058 24 7 0.5280 -2.7126 0.8621 25 1 -0.3633 -0.0341 1.0272 26 1 -0.3633 0.9065 -0.4841 27 1 -0.3633 -0.8725 -0.5429 28 1 1.6935 2.1323 0.0042 29 1 3.0682 3.6425 1.0507 30 1 4.3454 4.4310 0.0944 31 1 2.9280 3.7281 -0.7217 32 1 6.0652 2.3524 -1.1742 33 1 6.2059 3.1672 0.4019 34 1 6.1671 1.3896 0.3193 35 1 4.1779 -2.0826 -0.0175 36 1 2.6716 -3.3100 -1.6269 37 1 4.6573 -5.1142 -2.2628 38 1 -0.4007 -5.8084 0.0903 39 1 -0.9320 -3.9718 1.6303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241235574.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:55 Heat of formation + Delta-G solvation = 64.145313 kcal Electronic energy + Delta-G solvation = -21419.995104 eV Core-core repulsion = 18326.992453 eV Total energy + Delta-G solvation = -3093.002651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.96020 -38.20654 -36.30215 -34.18738 -33.30243 -31.30881 -30.49081 -28.73639 -28.19119 -26.82472 -25.87937 -24.79273 -22.60579 -21.48672 -21.07798 -19.81901 -17.48026 -16.72110 -16.34828 -15.60957 -15.16559 -14.96203 -14.36530 -14.27561 -14.04074 -13.90902 -13.33038 -13.22275 -12.64109 -12.61858 -12.42623 -12.25783 -12.24965 -12.13099 -11.80164 -11.76662 -11.35250 -11.25488 -11.10813 -10.92533 -10.27012 -9.93665 -9.56195 -9.40332 -8.95857 -8.91410 -8.04689 -7.99226 -7.73584 -6.98692 -6.79179 -4.60811 1.72538 1.85431 2.75787 2.85660 3.02419 3.05300 3.13127 3.24753 3.84578 4.36936 4.64765 4.87329 5.04171 5.25893 5.31001 5.36535 5.46036 5.52372 5.55484 5.61235 5.67936 5.74930 5.92425 5.98682 6.14825 6.18785 6.25675 6.42724 6.58072 6.71249 6.85433 6.89293 6.97127 7.08029 7.14389 7.22791 7.36277 7.46678 7.65999 7.85620 8.09494 8.42767 8.62203 8.72343 8.73399 9.58452 10.05376 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.017993 B = 0.004864 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.784962 B = 5755.191334 C = 6940.747651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.018 3.982 3 C -0.244 4.244 4 C 0.388 3.612 5 N -0.626 5.626 6 C 0.104 3.896 7 C 0.103 3.897 8 N -0.546 5.546 9 C 0.164 3.836 10 C -0.115 4.115 11 C 0.151 3.849 12 C -0.192 4.192 13 C 0.126 3.874 14 C -0.455 4.455 15 H 0.081 0.919 16 C 0.078 3.922 17 N -0.784 5.784 18 Si 0.912 3.088 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.275 4.275 23 C 0.100 3.900 24 N -0.561 5.561 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.124 0.876 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.161 0.839 36 H 0.129 0.871 37 H 0.284 0.716 38 H 0.099 0.901 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.012 12.017 0.818 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.010 3.990 3 C -0.269 4.269 4 C 0.155 3.845 5 N -0.342 5.342 6 C -0.040 4.040 7 C -0.040 4.040 8 N -0.263 5.263 9 C 0.007 3.993 10 C -0.120 4.120 11 C 0.020 3.980 12 C -0.215 4.215 13 C 0.118 3.882 14 C -0.486 4.486 15 H 0.099 0.901 16 C -0.142 4.142 17 N -0.410 5.410 18 Si 0.736 3.264 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.298 4.298 23 C -0.055 4.055 24 N -0.276 5.276 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.142 0.858 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.178 0.822 36 H 0.147 0.853 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.050 12.917 1.389 13.153 hybrid contribution -0.381 -1.266 -1.244 1.815 sum 1.668 11.651 0.146 11.771 Atomic orbital electron populations 1.20676 0.90331 1.01722 1.02940 1.20090 0.96471 0.91254 0.91226 1.21070 0.92558 0.98582 1.14662 1.18240 0.87848 0.86127 0.92290 1.45989 1.05788 1.02579 1.79832 1.21556 0.97321 0.84081 1.01056 1.21500 0.79373 1.02637 1.00521 1.67101 1.40397 0.97202 1.21556 1.22623 0.90963 0.94416 0.91311 1.19347 0.93601 0.92504 1.06569 1.19004 0.93575 0.91507 0.93914 1.22242 1.04479 0.92867 1.01889 1.17763 0.89294 0.91741 0.89390 1.19617 0.97798 1.09528 1.21682 0.90054 1.25959 0.95590 0.95325 0.97317 1.69739 1.02007 1.33642 1.35564 0.86249 0.78347 0.80480 0.81348 1.19143 1.20115 1.18503 1.21889 1.06137 1.00022 1.01729 1.21809 0.97137 0.89591 0.96946 1.67434 1.10356 1.23880 1.25927 0.90316 0.92841 0.90761 0.85829 0.92860 0.90894 0.92841 0.94004 0.92506 0.90259 0.82188 0.85311 0.90483 0.88241 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 8.96 36.01 0.32 -1.36 16 2 C 0.02 0.34 5.93 -104.03 -0.62 -0.28 16 3 C -0.24 -4.07 9.01 -39.28 -0.35 -4.43 16 4 C 0.39 6.70 7.37 -155.06 -1.14 5.56 16 5 N -0.63 -8.62 3.39 -189.67 -0.64 -9.26 16 6 C 0.10 1.01 9.40 59.85 0.56 1.57 16 7 C 0.10 1.22 10.46 59.84 0.63 1.85 16 8 N -0.55 -10.52 9.05 -12.17 -0.11 -10.63 16 9 C 0.16 3.40 10.63 -17.21 -0.18 3.22 16 10 C -0.12 -2.46 5.61 -104.74 -0.59 -3.05 16 11 C 0.15 3.61 5.48 -83.04 -0.45 3.15 16 12 C -0.19 -4.92 8.19 -38.34 -0.31 -5.23 16 13 C 0.13 3.29 5.61 -106.56 -0.60 2.69 16 14 C -0.46 -11.70 9.12 -37.65 -0.34 -12.04 16 15 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 16 C 0.08 1.89 5.22 -17.34 -0.09 1.80 16 17 N -0.78 -19.50 10.86 55.55 0.60 -18.89 16 18 Si 0.91 18.12 29.59 -169.99 -5.03 13.09 16 19 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 22 C -0.27 -6.58 9.90 -38.67 -0.38 -6.96 16 23 C 0.10 2.27 11.15 -17.70 -0.20 2.07 16 24 N -0.56 -13.16 8.82 -9.95 -0.09 -13.25 16 25 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 27 H 0.07 1.41 6.90 -51.93 -0.36 1.05 16 28 H 0.12 1.70 6.68 -52.49 -0.35 1.35 16 29 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.07 0.53 7.79 -51.93 -0.40 0.12 16 31 H 0.05 0.50 7.72 -51.93 -0.40 0.09 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 34 H 0.08 1.07 7.29 -51.93 -0.38 0.69 16 35 H 0.16 3.35 8.00 -52.49 -0.42 2.93 16 36 H 0.13 3.39 6.10 -52.49 -0.32 3.07 16 37 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 38 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 39 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 LS Contribution 328.25 15.07 4.95 4.95 Total: -1.00 -28.73 328.25 -9.20 -37.93 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.12 Total: 7.52 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -3.75 Total: -11.45 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.24 Total: -52.04 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.73 -9.20 -37.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241235574.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.073 kcal (2) G-P(sol) polarization free energy of solvation -28.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds