Wall clock time and date at job start Tue Mar 31 2020 05:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36941 * 120.75269 * 2 1 4 4 C 1.39345 * 119.39104 * 179.72570 * 3 2 1 5 5 N 1.38701 * 119.53286 * 179.97438 * 4 3 2 6 6 C 1.46505 * 119.99690 * 5.00779 * 5 4 3 7 7 C 1.46495 * 120.00371 * 185.00063 * 5 4 3 8 8 N 1.32587 * 120.93906 * 359.97438 * 4 3 2 9 9 C 1.31709 * 121.63597 * 0.02562 * 8 4 3 10 10 C 1.39664 * 120.50597 * 0.02562 * 9 8 4 11 11 C 1.47721 * 120.48407 * 180.02562 * 10 9 8 12 12 C 1.39410 * 120.78980 * 64.95395 * 11 10 9 13 13 N 1.31625 * 120.64992 * 180.02562 * 12 11 10 14 14 C 1.32248 * 122.51176 * 359.97438 * 13 12 11 15 15 C 1.36424 * 121.53535 * 0.02730 * 14 13 12 16 16 C 1.41145 * 119.11295 * 359.71994 * 15 14 13 17 17 C 1.40864 * 121.11576 * 180.25768 * 16 15 14 18 18 H 1.07997 * 119.99883 * 204.49710 * 17 16 15 19 19 C 1.40143 * 119.99768 * 24.50275 * 17 16 15 20 20 N 1.30709 * 120.00265 * 14.00356 * 19 17 16 21 21 Si 1.86806 * 119.99710 * 194.01501 * 19 17 16 22 22 H 1.48495 * 109.47012 * 94.97059 * 21 19 17 23 23 H 1.48499 * 109.46633 * 214.97121 * 21 19 17 24 24 H 1.48493 * 109.47013 * 334.96950 * 21 19 17 25 25 H 1.08993 * 109.47527 * 89.99184 * 1 2 3 26 26 H 1.09002 * 109.46989 * 209.99886 * 1 2 3 27 27 H 1.09007 * 109.46883 * 329.99351 * 1 2 3 28 28 H 1.07995 * 120.30933 * 359.71126 * 3 2 1 29 29 H 1.09001 * 109.47028 * 89.99639 * 6 5 4 30 30 H 1.08994 * 109.46947 * 209.99592 * 6 5 4 31 31 H 1.09000 * 109.47234 * 329.99637 * 6 5 4 32 32 H 1.09001 * 109.46906 * 90.00293 * 7 5 4 33 33 H 1.09001 * 109.47287 * 210.00526 * 7 5 4 34 34 H 1.08999 * 109.47130 * 330.00840 * 7 5 4 35 35 H 1.08005 * 119.74716 * 180.02562 * 9 8 4 36 36 H 1.08003 * 119.67103 * 359.97438 * 12 11 10 37 37 H 1.08004 * 119.23559 * 180.02562 * 14 13 12 38 38 H 1.07997 * 120.44777 * 179.97438 * 15 14 13 39 39 H 0.97004 * 119.99958 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.1769 0.0000 4 6 3.6002 1.1437 0.0058 5 7 4.3124 2.3340 0.0053 6 6 3.6034 3.6118 0.1094 7 6 5.7735 2.3133 -0.0992 8 7 4.2547 -0.0093 0.0118 9 6 3.6204 -1.1637 0.0121 10 6 2.2244 -1.2056 0.0054 11 6 1.5136 -2.5005 0.0062 12 6 1.6093 -3.3664 1.0946 13 7 0.9751 -4.5198 1.0922 14 6 0.2249 -4.9164 0.0779 15 6 0.0644 -4.1445 -1.0355 16 6 0.7106 -2.8914 -1.1014 17 6 0.5698 -2.0581 -2.2283 18 1 1.3315 -1.3280 -2.4586 19 6 -0.5590 -2.1763 -3.0505 20 7 -1.6003 -2.8500 -2.6380 21 14 -0.5750 -1.3714 -4.7361 22 1 -0.1617 -2.3624 -5.7618 23 1 -1.9454 -0.8866 -5.0400 24 1 0.3691 -0.2253 -4.7463 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5140 28 1 1.6847 2.1220 -0.0047 29 1 3.5003 3.8856 1.1595 30 1 4.1675 4.3839 -0.4137 31 1 2.6150 3.5166 -0.3400 32 1 6.0632 2.3513 -1.1494 33 1 6.1874 3.1758 0.4233 34 1 6.1570 1.3975 0.3505 35 1 4.1842 -2.0849 0.0175 36 1 2.2104 -3.0884 1.9477 37 1 -0.2724 -5.8736 0.1322 38 1 -0.5521 -4.4858 -1.8539 39 1 -2.3815 -2.9322 -3.2073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241250488.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:08 Heat of formation + Delta-G solvation = 67.045929 kcal Electronic energy + Delta-G solvation = -21952.288638 eV Core-core repulsion = 18859.411767 eV Total energy + Delta-G solvation = -3092.876871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.86461 -38.23467 -36.21472 -34.28728 -33.24625 -31.45508 -30.17170 -28.63212 -28.19712 -26.84176 -25.82009 -24.58045 -22.40857 -21.43098 -21.10780 -19.62139 -17.60668 -16.63807 -16.21363 -15.68315 -15.17248 -14.98143 -14.51430 -14.35620 -13.98569 -13.92854 -13.10942 -12.87377 -12.68133 -12.50340 -12.26651 -12.19297 -12.06391 -12.05413 -11.67296 -11.62719 -11.44153 -11.30969 -11.12963 -10.87881 -10.35198 -9.89793 -9.56589 -9.32771 -8.89060 -8.71963 -8.01580 -7.97459 -7.61836 -7.02271 -6.76224 -4.64662 1.91178 2.08080 2.68636 2.82805 2.97035 3.01013 3.20990 3.25125 3.78188 4.53831 4.59318 4.94228 5.18687 5.33436 5.39917 5.54260 5.57221 5.64348 5.70344 5.74422 5.80188 5.87330 5.95847 6.04686 6.26370 6.38065 6.39224 6.52225 6.60442 6.84464 6.87491 6.93319 7.09012 7.18000 7.25024 7.35744 7.38276 7.49867 7.77889 7.86721 8.06252 8.40536 8.66295 8.69918 8.75539 9.62020 9.95876 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.006436 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.759024 B = 4349.550782 C = 5557.659620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.018 3.982 3 C -0.242 4.242 4 C 0.379 3.621 5 N -0.627 5.627 6 C 0.101 3.899 7 C 0.105 3.895 8 N -0.548 5.548 9 C 0.136 3.864 10 C -0.083 4.083 11 C -0.217 4.217 12 C 0.124 3.876 13 N -0.578 5.578 14 C 0.079 3.921 15 C -0.209 4.209 16 C 0.145 3.855 17 C -0.434 4.434 18 H 0.081 0.919 19 C 0.078 3.922 20 N -0.780 5.780 21 Si 0.905 3.095 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.260 1.260 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.122 0.878 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.148 0.852 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 9.729 1.023 10.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.010 3.990 3 C -0.266 4.266 4 C 0.147 3.853 5 N -0.344 5.344 6 C -0.043 4.043 7 C -0.038 4.038 8 N -0.265 5.265 9 C -0.020 4.020 10 C -0.088 4.088 11 C -0.224 4.224 12 C -0.034 4.034 13 N -0.292 5.292 14 C -0.069 4.069 15 C -0.231 4.231 16 C 0.137 3.863 17 C -0.464 4.464 18 H 0.099 0.901 19 C -0.142 4.142 20 N -0.405 5.405 21 Si 0.729 3.271 22 H -0.191 1.191 23 H -0.200 1.200 24 H -0.183 1.183 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.140 0.860 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.166 0.834 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.146 0.854 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.659 9.225 1.680 10.952 hybrid contribution -1.106 0.944 -1.654 2.202 sum 4.553 10.169 0.026 11.141 Atomic orbital electron populations 1.20754 0.90386 1.01417 1.03567 1.19948 0.96534 0.91401 0.91110 1.20891 0.92614 0.98856 1.14264 1.18199 0.87858 0.85994 0.93296 1.45884 1.05534 1.02558 1.80421 1.21584 0.97721 0.84270 1.00740 1.21422 0.79641 1.02374 1.00357 1.67024 1.40504 0.97332 1.21661 1.22581 0.91288 0.93864 0.94294 1.19255 0.92903 0.93054 1.03587 1.19289 1.10334 0.95354 0.97373 1.22084 0.96058 0.89747 0.95496 1.67300 1.13990 1.17858 1.30075 1.21699 0.96120 0.98363 0.90737 1.21970 1.05849 0.95375 0.99896 1.17727 0.87502 0.90739 0.90291 1.19492 1.04228 1.16413 1.06294 0.90098 1.25985 0.94653 0.94075 0.99506 1.69745 1.03213 1.31243 1.36276 0.86325 0.78685 0.80433 0.81685 1.19107 1.19991 1.18337 0.89522 0.90828 0.93404 0.86050 0.93640 0.91758 0.91188 0.94207 0.92704 0.90405 0.83438 0.86353 0.86626 0.85434 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.01 8.62 36.00 0.31 -1.70 16 2 C 0.02 0.35 5.38 -104.32 -0.56 -0.21 16 3 C -0.24 -4.28 8.89 -39.64 -0.35 -4.63 16 4 C 0.38 6.75 7.37 -155.08 -1.14 5.60 16 5 N -0.63 -9.04 3.38 -189.64 -0.64 -9.68 16 6 C 0.10 1.07 10.27 59.85 0.61 1.69 16 7 C 0.11 1.29 10.49 59.84 0.63 1.92 16 8 N -0.55 -10.45 9.05 -12.06 -0.11 -10.56 16 9 C 0.14 2.67 10.93 -17.07 -0.19 2.49 16 10 C -0.08 -1.74 4.49 -104.72 -0.47 -2.21 16 11 C -0.22 -4.99 4.27 -104.04 -0.44 -5.44 16 12 C 0.12 2.82 10.93 -17.20 -0.19 2.63 16 13 N -0.58 -13.80 10.32 -13.35 -0.14 -13.94 16 14 C 0.08 1.86 11.08 -18.03 -0.20 1.66 16 15 C -0.21 -5.15 8.73 -39.13 -0.34 -5.49 16 16 C 0.15 3.59 5.13 -106.25 -0.54 3.04 16 17 C -0.43 -10.51 6.39 -37.87 -0.24 -10.75 16 18 H 0.08 2.01 7.17 -52.49 -0.38 1.63 16 19 C 0.08 1.80 5.25 -17.31 -0.09 1.71 16 20 N -0.78 -18.37 10.80 55.56 0.60 -17.77 16 21 Si 0.90 17.67 29.58 -169.99 -5.03 12.64 16 22 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 25 H 0.09 1.77 7.03 -51.93 -0.36 1.40 16 26 H 0.07 1.57 7.05 -51.93 -0.37 1.20 16 27 H 0.05 0.77 8.10 -51.92 -0.42 0.35 16 28 H 0.12 1.83 5.99 -52.49 -0.31 1.52 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.54 8.07 -51.93 -0.42 0.13 16 31 H 0.07 0.75 5.95 -51.93 -0.31 0.44 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.52 8.07 -51.93 -0.42 0.10 16 34 H 0.08 1.06 7.28 -51.93 -0.38 0.68 16 35 H 0.15 2.71 8.06 -52.48 -0.42 2.29 16 36 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 37 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 38 H 0.13 3.20 6.13 -52.49 -0.32 2.88 16 39 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -27.46 322.26 -8.61 -36.07 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.94 Total: 8.09 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -3.21 Total: -9.69 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.29 Total: -51.96 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.46 -8.61 -36.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241250488.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.114 kcal (2) G-P(sol) polarization free energy of solvation -27.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds