Wall clock time and date at job start Tue Mar 31 2020 05:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36253 * 119.93672 * 2 1 4 4 C 1.40921 * 119.87654 * 179.97438 * 3 2 1 5 5 C 1.41022 * 120.11622 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00064 * 24.69124 * 5 4 3 7 7 C 1.39942 * 119.99956 * 204.69165 * 5 4 3 8 8 N 1.30847 * 119.99697 * 17.97486 * 7 5 4 9 9 Si 1.86793 * 119.99980 * 197.97714 * 7 5 4 10 10 H 1.48497 * 109.47516 * 60.00036 * 9 7 5 11 11 H 1.48507 * 109.47325 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47271 * 300.00060 * 9 7 5 13 13 C 1.40957 * 119.76520 * 0.02562 * 4 3 2 14 14 C 1.36207 * 119.87825 * 359.75934 * 13 4 3 15 15 C 1.39927 * 119.94319 * 180.02562 * 2 1 3 16 16 C 1.48001 * 119.87723 * 359.97438 * 15 2 1 17 17 C 1.41093 * 126.36821 * 310.02044 * 16 15 2 18 18 N 1.30553 * 108.12192 * 179.97438 * 17 16 15 19 19 N 1.39958 * 108.84903 * 0.02562 * 18 17 16 20 20 C 1.46500 * 125.81351 * 179.97438 * 19 18 17 21 21 C 1.53932 * 113.73111 * 191.74971 * 20 19 18 22 22 N 1.47956 * 86.18294 * 221.92155 * 21 20 19 23 23 C 1.47958 * 90.76174 * 24.69021 * 22 21 20 24 24 C 1.34700 * 108.37149 * 359.97438 * 19 18 17 25 25 H 1.09004 * 109.46963 * 269.97773 * 1 2 3 26 26 H 1.09002 * 109.47151 * 29.97603 * 1 2 3 27 27 H 1.09001 * 109.46904 * 149.97532 * 1 2 3 28 28 H 1.07998 * 120.06259 * 359.97438 * 3 2 1 29 29 H 0.97001 * 119.99718 * 179.97438 * 8 7 5 30 30 H 1.08007 * 120.05798 * 180.02562 * 13 4 3 31 31 H 1.08006 * 119.94096 * 180.25284 * 14 13 4 32 32 H 1.07997 * 125.93876 * 0.25336 * 17 16 15 33 33 H 1.09000 * 112.93760 * 323.45239 * 20 19 18 34 34 H 1.08999 * 113.76423 * 336.23791 * 21 20 19 35 35 H 1.09004 * 113.75895 * 107.60750 * 21 20 19 36 36 H 1.00902 * 111.00232 * 271.80239 * 22 21 20 37 37 H 1.08998 * 113.76399 * 220.99332 * 23 22 21 38 38 H 1.09000 * 113.76008 * 89.62618 * 23 22 21 39 39 H 1.08005 * 126.30481 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1807 0.0000 4 6 3.5962 1.1793 0.0005 5 6 4.3051 2.3984 0.0000 6 1 3.8418 3.2926 0.3899 7 6 5.6089 2.4494 -0.5058 8 7 6.0464 1.4932 -1.2845 9 14 6.7246 3.8825 -0.0692 10 1 6.9088 3.9358 1.4033 11 1 8.0435 3.7014 -0.7273 12 1 6.1084 5.1500 -0.5371 13 6 4.2947 -0.0451 0.0005 14 6 3.6051 -1.2197 0.0050 15 6 2.2055 -1.2125 -0.0005 16 6 1.4615 -2.4919 -0.0005 17 6 0.4097 -2.8481 0.8698 18 7 0.0131 -4.0517 0.5563 19 7 0.7834 -4.5167 -0.5157 20 6 0.6510 -5.8244 -1.1628 21 6 1.8114 -6.1645 -2.1154 22 7 0.7747 -6.6881 -3.0320 23 6 -0.2426 -5.8079 -2.4161 24 6 1.6672 -3.5571 -0.8511 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6470 2.1160 -0.0004 29 1 6.9500 1.5288 -1.6354 30 1 5.3748 -0.0517 0.0014 31 1 4.1393 -2.1584 0.0091 32 1 0.0004 -2.2304 1.6556 33 1 0.4085 -6.6228 -0.4615 34 1 2.3355 -5.2893 -2.4992 35 1 2.4850 -6.9304 -1.7310 36 1 0.5778 -7.6587 -2.8387 37 1 -1.2101 -6.2887 -2.2719 38 1 -0.3193 -4.8282 -2.8878 39 1 2.4016 -3.6121 -1.6411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241612329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:13 Heat of formation + Delta-G solvation = 110.824572 kcal Electronic energy + Delta-G solvation = -21166.278784 eV Core-core repulsion = 18075.300297 eV Total energy + Delta-G solvation = -3090.978487 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.24050 -40.24775 -39.30315 -35.86114 -33.36168 -32.76211 -32.29907 -30.16479 -27.74791 -27.38330 -27.16091 -26.25530 -23.40386 -22.30897 -22.04054 -21.13771 -20.47473 -18.78931 -18.28386 -17.71593 -17.06796 -16.07371 -15.99476 -15.64473 -15.36519 -15.32471 -14.55297 -14.36641 -14.21896 -13.89285 -13.81858 -13.64336 -13.47735 -13.27414 -13.10318 -12.90767 -12.71046 -12.59741 -12.35744 -12.15981 -12.11560 -11.64390 -11.33094 -11.20997 -10.98567 -10.32014 -9.85772 -9.60053 -9.17315 -8.68352 -8.57940 -6.24663 0.76314 1.07288 1.25466 1.39429 1.49195 1.52699 1.59900 2.04023 2.22713 2.74042 2.79425 3.13218 3.65560 3.76791 3.90143 4.01773 4.16671 4.42113 4.44984 4.48238 4.50268 4.60564 4.68637 4.73350 4.76031 4.81816 4.90649 4.96670 5.06289 5.13726 5.19800 5.22384 5.44067 5.57817 5.71189 5.82704 6.07891 6.19112 6.23185 6.24771 6.34598 6.45707 6.75468 6.83309 6.98202 7.11656 8.34957 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.003721 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.937684 B = 7522.292504 C = 8204.347536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.051 4.051 3 C -0.242 4.242 4 C 0.084 3.916 5 C -0.500 4.500 6 H 0.074 0.926 7 C 0.037 3.963 8 N -0.822 5.822 9 Si 0.980 3.020 10 H -0.261 1.261 11 H -0.267 1.267 12 H -0.260 1.260 13 C -0.193 4.193 14 C -0.089 4.089 15 C -0.140 4.140 16 C -0.168 4.168 17 C 0.051 3.949 18 N -0.325 5.325 19 N -0.360 5.360 20 C 0.088 3.912 21 C 0.019 3.981 22 N -0.653 5.653 23 C 0.017 3.983 24 C 0.046 3.954 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.288 0.712 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.189 0.811 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.357 0.643 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 -13.420 -0.918 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.052 4.052 3 C -0.261 4.261 4 C 0.081 3.919 5 C -0.529 4.529 6 H 0.092 0.908 7 C -0.179 4.179 8 N -0.448 5.448 9 Si 0.801 3.199 10 H -0.186 1.186 11 H -0.191 1.191 12 H -0.184 1.184 13 C -0.212 4.212 14 C -0.107 4.107 15 C -0.142 4.142 16 C -0.179 4.179 17 C -0.134 4.134 18 N -0.146 5.146 19 N -0.143 5.143 20 C -0.015 4.015 21 C -0.111 4.111 22 N -0.282 5.282 23 C -0.113 4.113 24 C -0.100 4.100 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.205 0.795 33 H 0.150 0.850 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.174 0.826 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.671 -14.308 -1.660 16.319 hybrid contribution 1.156 1.187 0.862 1.868 sum -6.515 -13.120 -0.798 14.670 Atomic orbital electron populations 1.20688 0.90906 1.01559 1.01984 1.19499 0.95786 0.92051 0.97821 1.20702 0.93778 0.96486 1.15142 1.17959 0.92051 0.93646 0.88212 1.19772 0.99343 0.96196 1.37602 0.90787 1.26737 0.99279 1.00012 0.91829 1.69891 1.18508 1.33765 1.22593 0.85287 0.76998 0.78019 0.79616 1.18588 1.19132 1.18418 1.20895 0.98974 0.92369 1.08999 1.20634 0.93579 0.96526 0.99975 1.17535 0.91356 0.90097 1.15222 1.19153 1.02302 0.95498 1.00956 1.24136 0.96253 0.93210 0.99768 1.76951 1.19157 1.13634 1.04846 1.48565 1.26545 1.13506 1.25653 1.25391 0.99646 0.82354 0.94125 1.24206 0.94958 1.02263 0.89708 1.65088 1.04556 1.08467 1.50059 1.24143 0.97015 0.99607 0.90562 1.22953 0.96769 0.89295 1.00991 0.90719 0.92355 0.92150 0.88819 0.90158 0.88382 0.88120 0.79450 0.84998 0.88258 0.87198 0.82637 0.88049 0.89558 0.80054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.27 8.74 71.24 0.62 -2.65 16 2 C -0.05 -2.25 5.87 -19.92 -0.12 -2.37 16 3 C -0.24 -12.04 9.36 22.46 0.21 -11.83 16 4 C 0.08 4.59 5.57 -21.27 -0.12 4.47 16 5 C -0.50 -27.38 9.03 23.37 0.21 -27.17 16 6 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 7 C 0.04 1.86 5.13 85.25 0.44 2.30 16 8 N -0.82 -43.28 10.96 21.83 0.24 -43.04 16 9 Si 0.98 38.48 29.60 68.60 2.03 40.51 16 10 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 11 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 12 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 13 C -0.19 -10.29 8.63 22.46 0.19 -10.10 16 14 C -0.09 -4.16 9.64 22.22 0.21 -3.95 16 15 C -0.14 -6.07 5.78 -19.86 -0.11 -6.18 16 16 C -0.17 -6.08 4.75 -20.08 -0.10 -6.18 16 17 C 0.05 1.69 10.25 85.58 0.88 2.56 16 18 N -0.32 -10.21 12.51 -56.35 -0.70 -10.91 16 19 N -0.36 -9.81 3.79 -329.17 -1.25 -11.06 16 20 C 0.09 1.61 5.20 46.56 0.24 1.85 16 21 C 0.02 0.30 8.25 86.41 0.71 1.01 16 22 N -0.65 -9.59 8.56 -524.62 -4.49 -14.08 16 23 C 0.02 0.29 8.70 86.41 0.75 1.04 16 24 C 0.05 1.42 10.63 84.16 0.89 2.32 16 25 H 0.07 2.27 7.98 -2.39 -0.02 2.25 16 26 H 0.06 1.90 8.08 -2.39 -0.02 1.89 16 27 H 0.06 2.02 6.48 -2.39 -0.02 2.00 16 28 H 0.09 4.47 8.06 -2.91 -0.02 4.44 16 29 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 30 H 0.10 5.47 6.16 -2.91 -0.02 5.45 16 31 H 0.10 4.28 8.06 -2.91 -0.02 4.25 16 32 H 0.19 5.50 7.73 -2.91 -0.02 5.48 16 33 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.10 1.80 6.28 -2.39 -0.01 1.78 16 35 H 0.11 1.20 8.14 -2.38 -0.02 1.19 16 36 H 0.36 3.34 8.89 -89.69 -0.80 2.55 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.18 5.02 6.66 -2.91 -0.02 5.00 16 Total: -1.00 -64.03 325.41 1.03 -63.00 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.28 Total: 30.45 kcal Atomic # 6 Polarization: -59.80 SS G_CDS: 4.92 Total: -54.88 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -6.20 Total: -79.09 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -64.03 1.03 -63.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241612329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.829 kcal (2) G-P(sol) polarization free energy of solvation -64.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds