Wall clock time and date at job start Tue Mar 31 2020 05:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37640 * 119.96065 * 2 1 4 4 C 1.39856 * 119.91788 * 180.27804 * 3 2 1 5 5 C 1.47578 * 120.07140 * 179.71787 * 4 3 2 6 6 N 1.33061 * 120.54865 * 43.53249 * 5 4 3 7 7 C 1.31900 * 120.02502 * 179.97438 * 6 5 4 8 8 C 1.39025 * 121.22992 * 0.02562 * 7 6 5 9 9 N 1.31521 * 121.14498 * 359.97438 * 8 7 6 10 10 C 1.34092 * 119.86242 * 359.97438 * 9 8 7 11 11 C 1.40706 * 120.58359 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99999 * 189.32662 * 11 10 9 13 13 C 1.40137 * 119.99653 * 9.32163 * 11 10 9 14 14 N 1.30700 * 120.00520 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99600 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47226 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47289 * 120.00228 * 15 13 11 18 18 H 1.48508 * 109.47056 * 239.99957 * 15 13 11 19 19 C 1.39893 * 119.85471 * 359.43944 * 4 3 2 20 20 C 1.37597 * 119.92243 * 0.28155 * 19 4 3 21 21 C 1.39226 * 119.96011 * 179.71821 * 2 1 3 22 22 N 1.39166 * 119.92581 * 359.97438 * 21 2 1 23 23 C 1.46895 * 110.99803 * 120.02167 * 22 21 2 24 24 C 1.46899 * 111.00058 * 243.97635 * 22 21 2 25 25 H 1.09004 * 109.47101 * 270.28322 * 1 2 3 26 26 H 1.08997 * 109.47303 * 30.28044 * 1 2 3 27 27 H 1.09000 * 109.47641 * 150.28264 * 1 2 3 28 28 H 1.07997 * 120.03830 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.38270 * 180.02562 * 7 6 5 30 30 H 1.07997 * 119.42948 * 179.69921 * 8 7 6 31 31 H 0.96997 * 120.00639 * 179.97438 * 14 13 11 32 32 H 1.07997 * 120.04378 * 180.25230 * 19 4 3 33 33 H 1.08000 * 119.96681 * 180.02562 * 20 19 4 34 34 H 1.09001 * 109.47317 * 60.00119 * 23 22 21 35 35 H 1.09008 * 109.47273 * 179.97438 * 23 22 21 36 36 H 1.09000 * 109.47714 * 299.99947 * 23 22 21 37 37 H 1.08996 * 109.47301 * 59.99867 * 24 22 21 38 38 H 1.09000 * 109.47145 * 180.02562 * 24 22 21 39 39 H 1.09006 * 109.46688 * 299.99913 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1925 0.0000 4 6 3.5929 1.1914 -0.0059 5 6 4.3333 2.4680 -0.0122 6 7 3.9573 3.4718 0.7762 7 6 4.6269 4.6082 0.7626 8 6 5.7292 4.7854 -0.0658 9 7 6.1418 3.8249 -0.8639 10 6 5.4947 2.6507 -0.8855 11 6 5.9234 1.6125 -1.7330 12 1 5.3136 0.7297 -1.8566 13 6 7.1415 1.7240 -2.4167 14 7 7.8798 2.7921 -2.2668 15 14 7.7103 0.3461 -3.5424 16 1 6.7021 -0.7442 -3.5385 17 1 7.8696 0.8687 -4.9231 18 1 9.0117 -0.1821 -3.0598 19 6 4.2884 -0.0223 0.0001 20 6 3.5950 -1.2108 0.0059 21 6 2.2023 -1.2062 0.0059 22 7 1.5041 -2.4100 0.0124 23 6 1.8330 -3.2157 -1.1710 24 6 1.7609 -3.1609 1.2485 25 1 -0.3633 0.0051 1.0277 26 1 -0.3634 0.8874 -0.5182 27 1 -0.3634 -0.8925 -0.5094 28 1 1.6544 2.1277 0.0004 29 1 4.3129 5.4160 1.4070 30 1 6.2532 5.7297 -0.0571 31 1 8.7231 2.8692 -2.7397 32 1 5.3684 -0.0267 -0.0003 33 1 4.1312 -2.1482 0.0110 34 1 2.9015 -3.4314 -1.1782 35 1 1.2741 -4.1511 -1.1406 36 1 1.5680 -2.6628 -2.0722 37 1 1.4434 -2.5682 2.1064 38 1 1.2035 -4.0974 1.2272 39 1 2.8268 -3.3747 1.3290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242237460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:59 Heat of formation + Delta-G solvation = 69.467267 kcal Electronic energy + Delta-G solvation = -21734.382713 eV Core-core repulsion = 18641.610839 eV Total energy + Delta-G solvation = -3092.771874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.63441 -38.60928 -36.12960 -34.24990 -32.63487 -32.01843 -30.61111 -28.61158 -27.49271 -26.53714 -26.03040 -24.49268 -22.12175 -21.97542 -21.04708 -19.67389 -17.73886 -16.50000 -16.11291 -15.54046 -15.28629 -14.91059 -14.80332 -14.29006 -13.87693 -13.45683 -13.13522 -13.02510 -12.80980 -12.50321 -12.47337 -12.33538 -11.81447 -11.69920 -11.64043 -11.57312 -11.51590 -11.34928 -10.92859 -10.62629 -10.54987 -10.27004 -9.93401 -9.64176 -9.25711 -8.35712 -8.29122 -8.05401 -7.56551 -7.32914 -6.66861 -4.79578 1.63754 2.04510 2.46626 2.89904 2.92838 2.98111 3.15550 3.71241 4.10658 4.33698 4.52291 5.23690 5.33449 5.40042 5.41503 5.45261 5.53740 5.58660 5.66748 5.85728 5.89608 5.93053 5.97505 6.04213 6.06433 6.11844 6.19488 6.25363 6.40056 6.44549 6.63633 6.77714 6.83489 6.93776 7.00950 7.05819 7.14777 7.37487 7.42285 7.60648 7.83758 7.92888 8.25195 8.53452 9.16422 9.73523 9.93780 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.006297 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.099466 B = 4445.732462 C = 5966.699972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.067 4.067 3 C -0.106 4.106 4 C 0.035 3.965 5 C -0.036 4.036 6 N -0.409 5.409 7 C -0.126 4.126 8 C 0.092 3.908 9 N -0.461 5.461 10 C 0.224 3.776 11 C -0.395 4.395 12 H 0.102 0.898 13 C 0.063 3.937 14 N -0.701 5.701 15 Si 0.910 3.090 16 H -0.254 1.254 17 H -0.268 1.268 18 H -0.269 1.269 19 C -0.101 4.101 20 C -0.148 4.148 21 C 0.055 3.945 22 N -0.503 5.503 23 C 0.028 3.972 24 C 0.030 3.970 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.120 0.880 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.280 0.720 32 H 0.131 0.869 33 H 0.111 0.889 34 H 0.029 0.971 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 -8.856 1.157 11.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.068 4.068 3 C -0.126 4.126 4 C 0.033 3.967 5 C -0.184 4.184 6 N -0.120 5.120 7 C -0.286 4.286 8 C -0.078 4.078 9 N -0.178 5.178 10 C 0.098 3.902 11 C -0.425 4.425 12 H 0.119 0.881 13 C -0.165 4.165 14 N -0.320 5.320 15 Si 0.733 3.267 16 H -0.177 1.177 17 H -0.193 1.193 18 H -0.194 1.194 19 C -0.121 4.121 20 C -0.168 4.168 21 C -0.039 4.039 22 N -0.224 5.224 23 C -0.119 4.119 24 C -0.117 4.117 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.138 0.862 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.092 0.908 32 H 0.149 0.851 33 H 0.129 0.871 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.747 -8.604 1.065 10.986 hybrid contribution 1.379 -0.494 -0.409 1.521 sum -5.368 -9.098 0.656 10.584 Atomic orbital electron populations 1.20563 0.91382 1.02024 1.01529 1.19559 0.95752 0.91297 1.00223 1.21073 0.93413 0.96885 1.01210 1.18333 0.91829 0.91211 0.95306 1.21271 1.00760 0.93504 1.02903 1.67747 1.27225 0.99497 1.17578 1.22386 1.00920 0.96917 1.08417 1.23393 0.93740 0.98211 0.92453 1.69548 1.28427 0.99646 1.20140 1.20367 0.87741 0.91353 0.90748 1.19884 1.02249 1.02221 1.18115 0.88063 1.26251 0.96587 0.96845 0.96785 1.70051 1.08642 1.24114 1.29216 0.86193 0.79661 0.81072 0.79786 1.17744 1.19316 1.19385 1.21244 1.00556 0.90926 0.99352 1.21333 0.94188 0.97903 1.03368 1.18435 0.90034 0.90033 1.05407 1.59378 1.56851 1.03395 1.02725 1.22429 0.99090 0.97277 0.93134 1.22401 0.99341 0.97854 0.92089 0.92143 0.92667 0.90971 0.86223 0.85652 0.85430 0.90822 0.85141 0.87148 0.95231 0.91609 0.91258 0.91362 0.91604 0.95335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 9.76 36.00 0.35 -1.04 16 2 C -0.07 -1.17 5.89 -104.47 -0.62 -1.78 16 3 C -0.11 -2.11 9.31 -39.19 -0.37 -2.47 16 4 C 0.03 0.77 5.37 -104.86 -0.56 0.20 16 5 C -0.04 -0.89 6.55 -80.22 -0.53 -1.42 16 6 N -0.41 -10.12 10.32 -7.86 -0.08 -10.21 16 7 C -0.13 -2.92 11.17 -17.23 -0.19 -3.11 16 8 C 0.09 2.19 11.17 -17.39 -0.19 1.99 16 9 N -0.46 -12.38 8.14 -9.56 -0.08 -12.46 16 10 C 0.22 5.94 6.65 -82.64 -0.55 5.39 16 11 C -0.39 -9.90 7.60 -37.94 -0.29 -10.19 16 12 H 0.10 2.40 5.48 -52.49 -0.29 2.12 16 13 C 0.06 1.51 5.49 -17.32 -0.10 1.41 16 14 N -0.70 -17.51 11.55 55.56 0.64 -16.87 16 15 Si 0.91 17.38 29.56 -169.99 -5.03 12.36 16 16 H -0.25 -4.77 7.11 56.52 0.40 -4.36 16 17 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 18 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 19 C -0.10 -2.04 7.62 -39.20 -0.30 -2.34 16 20 C -0.15 -2.58 8.53 -39.43 -0.34 -2.91 16 21 C 0.05 0.91 4.71 -83.78 -0.39 0.52 16 22 N -0.50 -6.95 3.91 -186.80 -0.73 -7.68 16 23 C 0.03 0.34 9.34 60.06 0.56 0.90 16 24 C 0.03 0.36 9.38 60.06 0.56 0.92 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 27 H 0.07 0.97 7.45 -51.93 -0.39 0.59 16 28 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 29 H 0.13 2.49 8.06 -52.49 -0.42 2.07 16 30 H 0.13 2.59 8.06 -52.49 -0.42 2.17 16 31 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 32 H 0.13 2.72 6.76 -52.49 -0.35 2.36 16 33 H 0.11 1.71 6.99 -52.49 -0.37 1.34 16 34 H 0.03 0.36 7.10 -51.93 -0.37 -0.01 16 35 H 0.07 0.64 8.12 -51.92 -0.42 0.22 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 39 H 0.03 0.34 7.32 -51.93 -0.38 -0.04 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -28.74 325.65 -8.39 -37.12 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.08 Total: 6.77 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -2.94 Total: -13.94 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.25 Total: -47.21 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.74 -8.39 -37.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242237460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.591 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds