Wall clock time and date at job start Tue Mar 31 2020 05:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.37655 * 119.96704 * 2 1 4 4 C 1.39813 * 119.92942 * 180.27020 * 3 2 1 5 5 C 1.47742 * 120.07148 * 179.71920 * 4 3 2 6 6 C 1.40538 * 120.79738 * 359.74795 * 5 4 3 7 7 N 1.31542 * 119.08817 * 179.76121 * 6 5 4 8 8 C 1.33701 * 120.83407 * 0.52055 * 7 6 5 9 9 C 1.40952 * 119.12627 * 179.70259 * 8 7 6 10 10 H 1.07997 * 120.00273 * 180.02562 * 9 8 7 11 11 C 1.40103 * 120.00102 * 0.02562 * 9 8 7 12 12 N 1.30692 * 119.99809 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00083 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47131 * 89.99806 * 13 11 9 15 15 H 1.48506 * 109.46985 * 210.00085 * 13 11 9 16 16 H 1.48496 * 109.47176 * 329.99856 * 13 11 9 17 17 N 1.33694 * 121.74582 * 359.73041 * 8 7 6 18 18 C 1.31544 * 120.84321 * 359.97438 * 17 8 7 19 19 C 1.39861 * 119.85952 * 359.74818 * 4 3 2 20 20 C 1.37620 * 119.92494 * 359.97438 * 19 4 3 21 21 C 1.39224 * 119.96143 * 179.76200 * 2 1 3 22 22 N 1.39223 * 119.93270 * 0.02562 * 21 2 1 23 23 C 1.46901 * 110.99904 * 239.72560 * 22 21 2 24 24 C 1.46898 * 110.99807 * 115.76806 * 22 21 2 25 25 H 1.08992 * 109.46809 * 270.23696 * 1 2 3 26 26 H 1.08992 * 109.46550 * 30.23851 * 1 2 3 27 27 H 1.09000 * 109.46874 * 150.23473 * 1 2 3 28 28 H 1.08006 * 120.03513 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.45809 * 0.02562 * 6 5 4 30 30 H 0.96991 * 120.00085 * 180.02562 * 12 11 9 31 31 H 1.08001 * 120.45655 * 179.97438 * 18 17 8 32 32 H 1.08003 * 120.03392 * 180.02562 * 19 4 3 33 33 H 1.08001 * 119.95892 * 179.97438 * 20 19 4 34 34 H 1.09002 * 109.47401 * 59.99745 * 23 22 21 35 35 H 1.09001 * 109.46874 * 299.99758 * 23 22 21 36 36 H 1.09004 * 109.46970 * 179.97438 * 23 22 21 37 37 H 1.09006 * 109.46770 * 179.97438 * 24 22 21 38 38 H 1.09001 * 109.47456 * 300.00062 * 24 22 21 39 39 H 1.09000 * 109.46814 * 60.00368 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1947 1.1925 0.0000 4 6 3.5928 1.1916 -0.0057 5 6 4.3339 2.4697 -0.0120 6 6 3.6505 3.6977 -0.0176 7 7 4.3440 4.8155 -0.0184 8 6 5.6808 4.7925 -0.0242 9 6 6.3879 6.0119 -0.0312 10 1 7.4678 6.0099 -0.0364 11 6 5.6897 7.2265 -0.0313 12 7 4.3828 7.2290 -0.0255 13 14 6.6267 8.8424 -0.0398 14 1 6.8688 9.2669 -1.4421 15 1 5.8292 9.8808 0.6610 16 1 7.9270 8.6643 0.6549 17 7 6.3647 3.6437 -0.0242 18 6 5.7392 2.4865 -0.0179 19 6 4.2883 -0.0218 -0.0061 20 6 3.5950 -1.2106 -0.0003 21 6 2.2024 -1.2062 0.0050 22 7 1.5041 -2.4106 0.0095 23 6 1.8377 -3.2081 1.1972 24 6 1.7563 -3.1699 -1.2225 25 1 -0.3633 0.0042 1.0276 26 1 -0.3632 0.8878 -0.5175 27 1 -0.3633 -0.8921 -0.5102 28 1 1.6547 2.1279 0.0004 29 1 2.5708 3.7234 -0.0170 30 1 3.8994 8.0699 -0.0260 31 1 6.2979 1.5623 -0.0184 32 1 5.3684 -0.0258 -0.0101 33 1 4.1316 -2.1479 -0.0010 34 1 1.5760 -2.6491 2.0956 35 1 2.9062 -3.4237 1.2016 36 1 1.2781 -4.1433 1.1757 37 1 1.1991 -4.1063 -1.1926 38 1 1.4354 -2.5830 -2.0832 39 1 2.8218 -3.3840 -1.3056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242241398.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:05 Heat of formation + Delta-G solvation = 73.588582 kcal Electronic energy + Delta-G solvation = -21024.059554 eV Core-core repulsion = 17931.466393 eV Total energy + Delta-G solvation = -3092.593161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.79112 -38.83565 -36.34967 -34.03645 -32.61414 -32.03128 -31.09341 -28.77026 -27.60296 -26.69212 -26.23985 -23.99694 -23.05311 -21.89691 -20.93735 -19.77907 -18.02778 -16.71644 -16.26492 -15.48410 -15.15248 -15.00196 -14.85269 -14.57811 -13.77718 -13.54687 -13.29511 -12.99067 -12.83445 -12.70966 -12.47246 -12.39318 -12.13050 -11.85748 -11.75287 -11.59092 -11.44907 -11.32071 -11.17520 -10.89003 -10.63678 -10.40660 -9.71351 -9.29852 -9.24572 -8.84270 -8.42974 -8.32216 -7.45141 -7.29933 -6.72885 -4.85429 1.41310 1.84269 2.63155 2.90655 2.95175 2.99256 3.04045 3.73564 4.00273 4.18201 4.58759 5.11841 5.18910 5.23956 5.29001 5.43358 5.45223 5.48185 5.60572 5.70921 5.79530 5.80042 5.81094 5.85825 5.93939 5.95632 6.04474 6.06974 6.20378 6.26149 6.48645 6.73066 6.78959 6.84353 6.90433 6.91217 7.02106 7.23572 7.41607 7.50912 7.71975 7.96978 8.30175 8.38277 8.95603 9.91219 10.10734 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.041231 B = 0.003351 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.944424 B = 8353.084887 C = 8851.047140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.047 4.047 3 C -0.144 4.144 4 C 0.044 3.956 5 C -0.333 4.333 6 C 0.183 3.817 7 N -0.508 5.508 8 C 0.378 3.622 9 C -0.373 4.373 10 H 0.097 0.903 11 C 0.059 3.941 12 N -0.694 5.694 13 Si 0.923 3.077 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.257 1.257 17 N -0.594 5.594 18 C 0.189 3.811 19 C -0.145 4.145 20 C -0.129 4.129 21 C 0.033 3.967 22 N -0.501 5.501 23 C 0.030 3.970 24 C 0.029 3.971 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.122 0.878 29 H 0.132 0.868 30 H 0.280 0.720 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.811 -12.213 -0.019 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.048 4.048 3 C -0.163 4.163 4 C 0.043 3.957 5 C -0.343 4.343 6 C 0.006 3.994 7 N -0.224 5.224 8 C 0.146 3.854 9 C -0.406 4.406 10 H 0.115 0.885 11 C -0.170 4.170 12 N -0.314 5.314 13 Si 0.746 3.254 14 H -0.190 1.190 15 H -0.197 1.197 16 H -0.181 1.181 17 N -0.312 5.312 18 C 0.014 3.986 19 C -0.164 4.164 20 C -0.149 4.149 21 C -0.061 4.061 22 N -0.222 5.222 23 C -0.117 4.117 24 C -0.118 4.118 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.139 0.861 29 H 0.149 0.851 30 H 0.091 0.909 31 H 0.149 0.851 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.921 -10.901 0.000 12.405 hybrid contribution 0.748 -0.514 -0.018 0.908 sum -5.173 -11.415 -0.017 12.532 Atomic orbital electron populations 1.20606 0.91339 1.02150 1.01758 1.19583 0.95758 0.91312 0.98185 1.20994 0.93467 0.97082 1.04761 1.18741 0.92289 0.92101 0.92615 1.19761 0.95205 0.93237 1.26054 1.23091 0.99092 0.87896 0.89318 1.69359 1.07971 1.26867 1.18222 1.19956 0.86037 0.90847 0.88534 1.19504 0.95175 0.87890 1.38029 0.88487 1.26248 0.95169 1.01830 0.93749 1.70132 1.07546 1.28733 1.24990 0.86053 0.80397 0.79328 0.79612 1.18986 1.19733 1.18086 1.68652 1.40788 0.98471 1.23269 1.22705 0.90548 0.95807 0.89589 1.20955 0.99395 0.91518 1.04576 1.21302 0.94327 0.97702 1.01616 1.18362 0.89948 0.90089 1.07666 1.59365 1.56819 1.03361 1.02642 1.22409 0.98864 0.97409 0.93058 1.22423 0.99277 0.97848 0.92263 0.91902 0.92466 0.90953 0.86054 0.85061 0.90870 0.85106 0.86574 0.87386 0.91349 0.95423 0.91587 0.91588 0.91339 0.95451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 9.76 36.01 0.35 -0.95 16 2 C -0.05 -0.73 5.89 -104.46 -0.62 -1.35 16 3 C -0.14 -2.48 9.09 -39.21 -0.36 -2.84 16 4 C 0.04 0.84 5.89 -104.82 -0.62 0.22 16 5 C -0.33 -7.33 5.94 -104.28 -0.62 -7.95 16 6 C 0.18 4.34 10.70 -16.81 -0.18 4.16 16 7 N -0.51 -13.75 7.82 -12.40 -0.10 -13.85 16 8 C 0.38 10.45 7.35 -158.13 -1.16 9.29 16 9 C -0.37 -9.87 9.34 -37.86 -0.35 -10.22 16 10 H 0.10 2.45 7.85 -52.49 -0.41 2.03 16 11 C 0.06 1.43 5.50 -17.34 -0.10 1.33 16 12 N -0.69 -17.49 11.40 55.55 0.63 -16.86 16 13 Si 0.92 17.62 29.56 -169.99 -5.02 12.60 16 14 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 15 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 16 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 17 N -0.59 -15.50 10.33 -12.40 -0.13 -15.63 16 18 C 0.19 4.31 10.70 -16.81 -0.18 4.13 16 19 C -0.15 -2.45 9.44 -39.20 -0.37 -2.82 16 20 C -0.13 -1.95 8.53 -39.43 -0.34 -2.29 16 21 C 0.03 0.49 4.71 -83.76 -0.39 0.10 16 22 N -0.50 -6.26 3.91 -186.78 -0.73 -6.99 16 23 C 0.03 0.32 9.34 60.07 0.56 0.88 16 24 C 0.03 0.31 9.38 60.06 0.56 0.87 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.07 0.89 7.45 -51.93 -0.39 0.50 16 28 H 0.12 2.00 6.28 -52.48 -0.33 1.67 16 29 H 0.13 2.73 6.32 -52.49 -0.33 2.40 16 30 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 31 H 0.13 2.53 6.32 -52.49 -0.33 2.20 16 32 H 0.12 1.83 6.28 -52.48 -0.33 1.50 16 33 H 0.11 1.43 6.99 -52.49 -0.37 1.06 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.03 0.29 7.10 -51.93 -0.37 -0.08 16 36 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 37 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.29 7.32 -51.93 -0.38 -0.09 16 LS Contribution 324.86 15.07 4.90 4.90 Total: -1.00 -29.09 324.86 -9.16 -38.25 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.90 Total: 5.02 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -3.80 Total: -7.44 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.32 Total: -53.32 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.02 Total: 12.60 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.09 -9.16 -38.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242241398.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.837 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds