Wall clock time and date at job start Tue Mar 31 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47302 * 2 1 4 4 C 1.50704 * 109.47334 * 119.99905 * 2 1 3 5 5 C 1.38474 * 119.84637 * 300.00300 * 4 2 1 6 6 C 1.38084 * 120.34681 * 179.97438 * 5 4 2 7 7 C 1.38832 * 120.04977 * 0.02562 * 6 5 4 8 8 N 1.39295 * 120.15210 * 179.97438 * 7 6 5 9 9 C 1.40087 * 119.70019 * 359.97023 * 7 6 5 10 10 C 1.48116 * 120.17090 * 180.02562 * 9 7 6 11 11 C 1.40145 * 119.99548 * 132.25111 * 10 9 7 12 12 N 1.32142 * 120.28904 * 180.02562 * 11 10 9 13 13 C 1.31901 * 120.29379 * 359.77070 * 12 11 10 14 14 C 1.40811 * 119.98508 * 0.48140 * 13 12 11 15 15 C 1.41308 * 120.14244 * 179.77372 * 14 13 12 16 16 H 1.08001 * 120.00274 * 340.97184 * 15 14 13 17 17 C 1.40039 * 120.00238 * 160.97041 * 15 14 13 18 18 N 1.30744 * 119.99616 * 339.63622 * 17 15 14 19 19 Si 1.86795 * 120.00460 * 159.63907 * 17 15 14 20 20 H 1.48499 * 109.47314 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.46710 * 299.99918 * 19 17 15 22 22 H 1.48499 * 109.47099 * 59.99599 * 19 17 15 23 23 N 1.32579 * 119.99720 * 312.27078 * 10 9 7 24 24 C 1.37939 * 119.84980 * 120.23145 * 4 2 1 25 25 H 1.09004 * 109.47394 * 300.00386 * 1 2 3 26 26 H 1.09005 * 109.47102 * 60.00299 * 1 2 3 27 27 H 1.09000 * 109.47168 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47087 * 240.00038 * 2 1 3 29 29 H 1.09000 * 109.47471 * 300.00056 * 3 2 1 30 30 H 1.09004 * 109.47211 * 59.99503 * 3 2 1 31 31 H 1.08997 * 109.47664 * 180.02562 * 3 2 1 32 32 H 1.07994 * 119.82770 * 359.97438 * 5 4 2 33 33 H 1.07997 * 119.97349 * 179.97438 * 6 5 4 34 34 H 0.96996 * 119.99969 * 184.47532 * 8 7 6 35 35 H 0.97004 * 119.99698 * 4.47218 * 8 7 6 36 36 H 1.08001 * 119.85206 * 0.02562 * 11 10 9 37 37 H 1.08009 * 120.00864 * 180.25661 * 13 12 11 38 38 H 0.96996 * 120.00094 * 354.48212 * 18 17 15 39 39 H 1.08006 * 120.02777 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6958 -0.2346 2.4866 6 6 2.1500 -0.8777 3.6210 7 6 2.9489 -2.0074 3.5069 8 7 3.4087 -2.6575 4.6498 9 6 3.2905 -2.4906 2.2371 10 6 4.1418 -3.6953 2.1033 11 6 3.7682 -4.7233 1.2271 12 7 4.5231 -5.8008 1.1035 13 6 5.6370 -5.9163 1.8003 14 6 6.0210 -4.8930 2.6881 15 6 7.2113 -5.0155 3.4398 16 1 7.6643 -5.9859 3.5797 17 6 7.8037 -3.8786 4.0034 18 7 7.5193 -2.6922 3.5332 19 14 9.0002 -4.0569 5.4267 20 1 9.4828 -2.7144 5.8389 21 1 8.3142 -4.7087 6.5712 22 1 10.1541 -4.8895 5.0020 23 7 5.2568 -3.8011 2.8126 24 6 2.8291 -1.8288 1.1003 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.0749 0.6441 2.5796 33 1 1.8843 -0.5012 4.5977 34 1 4.0191 -3.4071 4.5690 35 1 3.1186 -2.3607 5.5265 36 1 2.8594 -4.6344 0.6504 37 1 6.2527 -6.7972 1.6926 38 1 6.9617 -2.6040 2.7445 39 1 3.0922 -2.1937 0.1184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244208521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:27 Heat of formation + Delta-G solvation = 33.777095 kcal Electronic energy + Delta-G solvation = -21672.552555 eV Core-core repulsion = 18578.233038 eV Total energy + Delta-G solvation = -3094.319516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.71741 -38.64618 -35.93091 -34.39284 -32.83445 -32.53578 -31.04624 -29.16718 -27.48485 -27.03425 -25.79768 -23.58295 -22.47281 -21.98105 -21.36253 -19.34532 -18.06056 -16.75339 -16.54152 -15.71235 -15.37918 -15.29029 -14.58883 -14.17490 -13.95955 -13.57170 -13.41402 -13.29387 -13.04413 -12.69846 -12.44325 -12.38729 -12.15140 -12.08927 -11.44794 -11.26790 -11.12103 -11.06276 -10.59525 -10.50306 -10.42947 -10.04706 -10.01895 -9.89679 -9.78232 -9.24610 -8.55173 -7.90972 -7.77744 -7.08277 -6.80555 -4.82076 1.61772 2.06708 2.49885 2.76532 3.08485 3.16782 3.28192 3.91517 4.25771 4.49104 4.53630 4.92350 5.00574 5.21489 5.35057 5.35944 5.46559 5.54456 5.68594 5.71705 5.82340 5.84425 5.90039 5.96742 6.06330 6.15220 6.22296 6.33288 6.36050 6.41637 6.45465 6.66740 6.79968 6.88143 7.00340 7.12747 7.34199 7.42729 7.58105 7.75726 8.05726 8.31852 8.39920 8.48470 9.03250 9.50232 9.98838 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.004985 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.654209 B = 5615.093554 C = 6227.354597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 C -0.143 4.143 4 C -0.149 4.149 5 C -0.064 4.064 6 C -0.210 4.210 7 C 0.251 3.749 8 N -0.862 5.862 9 C -0.102 4.102 10 C 0.168 3.832 11 C -0.113 4.113 12 N -0.422 5.422 13 C -0.061 4.061 14 C 0.198 3.802 15 C -0.469 4.469 16 H 0.088 0.912 17 C 0.033 3.967 18 N -0.745 5.745 19 Si 1.069 2.931 20 H -0.273 1.273 21 H -0.275 1.275 22 H -0.275 1.275 23 N -0.520 5.520 24 C -0.048 4.048 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.411 0.589 35 H 0.389 0.611 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.312 0.688 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.201 6.310 -0.311 10.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.200 4.200 4 C -0.152 4.152 5 C -0.083 4.083 6 C -0.233 4.233 7 C 0.142 3.858 8 N -0.400 5.400 9 C -0.108 4.108 10 C 0.022 3.978 11 C -0.270 4.270 12 N -0.133 5.133 13 C -0.232 4.232 14 C 0.073 3.927 15 C -0.501 4.501 16 H 0.106 0.894 17 C -0.195 4.195 18 N -0.367 5.367 19 Si 0.892 3.108 20 H -0.197 1.197 21 H -0.200 1.200 22 H -0.200 1.200 23 N -0.240 5.240 24 C -0.068 4.068 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.244 0.756 35 H 0.215 0.785 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.128 0.872 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.286 7.188 0.689 10.259 hybrid contribution -0.805 -1.096 -0.780 1.568 sum -8.091 6.092 -0.091 10.129 Atomic orbital electron populations 1.21851 0.95107 1.01752 1.01178 1.19927 0.95232 0.95553 0.95701 1.21858 1.01363 0.95618 1.01161 1.19301 1.03351 0.98303 0.94202 1.20564 0.98009 0.98218 0.91483 1.20405 1.06071 0.98225 0.98643 1.17732 0.90934 0.90136 0.86959 1.42698 1.53828 1.38620 1.04895 1.18070 1.03525 0.97539 0.91668 1.20416 0.91831 0.92432 0.93138 1.22481 1.03294 0.93675 1.07569 1.67649 1.03854 1.22060 1.19745 1.23187 0.97214 1.02383 1.00443 1.19384 0.93465 0.88487 0.91363 1.20599 1.04966 0.97834 1.26661 0.89403 1.27080 0.99418 0.91530 1.01521 1.70216 1.23613 1.25050 1.17819 0.83569 0.75319 0.77237 0.74629 1.19707 1.19999 1.20002 1.69042 1.04682 1.24798 1.25527 1.20783 0.95092 0.93782 0.97098 0.92760 0.93071 0.92634 0.91016 0.93068 0.92740 0.92566 0.86887 0.86730 0.75550 0.78476 0.85330 0.84804 0.87215 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.00 37.15 0.33 -1.16 16 2 C -0.05 -0.56 3.09 -91.77 -0.28 -0.84 16 3 C -0.14 -1.59 9.00 37.16 0.33 -1.26 16 4 C -0.15 -2.27 4.78 -104.64 -0.50 -2.77 16 5 C -0.06 -0.94 8.69 -39.55 -0.34 -1.28 16 6 C -0.21 -3.37 9.89 -39.42 -0.39 -3.76 16 7 C 0.25 4.78 6.74 -83.56 -0.56 4.22 16 8 N -0.86 -15.98 8.94 32.55 0.29 -15.69 16 9 C -0.10 -2.09 5.64 -104.72 -0.59 -2.68 16 10 C 0.17 3.95 5.84 -82.77 -0.48 3.47 16 11 C -0.11 -2.65 10.65 -16.70 -0.18 -2.82 16 12 N -0.42 -10.42 10.47 -12.03 -0.13 -10.55 16 13 C -0.06 -1.53 10.97 -16.55 -0.18 -1.71 16 14 C 0.20 5.14 6.16 -84.84 -0.52 4.62 16 15 C -0.47 -11.81 9.09 -37.74 -0.34 -12.15 16 16 H 0.09 2.06 7.92 -52.49 -0.42 1.64 16 17 C 0.03 0.81 5.31 -17.34 -0.09 0.72 16 18 N -0.74 -19.66 13.13 55.55 0.73 -18.93 16 19 Si 1.07 20.50 29.98 -169.99 -5.10 15.41 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 23 N -0.52 -13.19 5.88 -7.52 -0.04 -13.24 16 24 C -0.05 -0.86 9.07 -39.26 -0.36 -1.21 16 25 H 0.05 0.55 7.37 -51.93 -0.38 0.16 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.88 7.86 -51.93 -0.41 0.47 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.58 7.37 -51.93 -0.38 0.20 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.11 1.37 7.07 -52.49 -0.37 1.00 16 33 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 34 H 0.41 8.76 6.39 -40.82 -0.26 8.50 16 35 H 0.39 5.86 8.84 -40.82 -0.36 5.50 16 36 H 0.13 2.71 8.00 -52.49 -0.42 2.29 16 37 H 0.13 3.05 8.06 -52.48 -0.42 2.63 16 38 H 0.31 8.70 6.42 -40.82 -0.26 8.44 16 39 H 0.12 2.03 7.88 -52.48 -0.41 1.61 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -28.16 327.46 -8.48 -36.64 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -5.01 Total: 20.05 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -4.16 Total: -18.63 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.85 Total: -58.41 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.10 Total: 15.41 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.16 -8.48 -36.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244208521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.421 kcal (2) G-P(sol) polarization free energy of solvation -28.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds