Wall clock time and date at job start Tue Mar 31 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47398 * 2 1 4 4 C 1.50701 * 109.46678 * 119.99386 * 2 1 3 5 5 C 1.37653 * 119.96876 * 295.03510 * 4 2 1 6 6 C 1.39816 * 119.93062 * 179.97438 * 5 4 2 7 7 C 1.47745 * 120.06821 * 179.97438 * 6 5 4 8 8 C 1.40545 * 120.79368 * 179.97438 * 7 6 5 9 9 N 1.31543 * 119.08171 * 180.02562 * 8 7 6 10 10 C 1.33695 * 120.83698 * 0.02562 * 9 8 7 11 11 C 1.40959 * 119.12087 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00121 * 0.02562 * 11 10 9 13 13 C 1.40100 * 119.99770 * 179.97438 * 11 10 9 14 14 N 1.30692 * 119.99911 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99933 * 180.27883 * 13 11 10 16 16 H 1.48507 * 109.47057 * 179.72631 * 15 13 11 17 17 H 1.48501 * 109.47064 * 299.72622 * 15 13 11 18 18 H 1.48491 * 109.47437 * 59.72861 * 15 13 11 19 19 N 1.33690 * 121.75261 * 0.27875 * 10 9 8 20 20 C 1.31547 * 120.83194 * 359.43607 * 19 10 9 21 21 C 1.39853 * 119.86124 * 0.25493 * 6 5 4 22 22 C 1.37624 * 119.92790 * 359.48517 * 21 6 5 23 23 C 1.39235 * 119.96079 * 115.05646 * 4 2 1 24 24 N 1.39213 * 119.93295 * 359.97438 * 23 4 2 25 25 H 1.09000 * 109.47173 * 300.00831 * 1 2 3 26 26 H 1.08999 * 109.46459 * 60.00387 * 1 2 3 27 27 H 1.08995 * 109.47074 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47173 * 239.99169 * 2 1 3 29 29 H 1.08992 * 109.47229 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46576 * 299.99612 * 3 2 1 31 31 H 1.09001 * 109.47199 * 59.99151 * 3 2 1 32 32 H 1.07999 * 120.03671 * 0.02562 * 5 4 2 33 33 H 1.08002 * 120.45726 * 0.04500 * 8 7 6 34 34 H 0.97001 * 119.99673 * 179.97438 * 14 13 11 35 35 H 1.08000 * 120.45556 * 180.25700 * 20 19 10 36 36 H 1.08001 * 120.03884 * 179.74798 * 21 6 5 37 37 H 1.07997 * 119.96715 * 180.23210 * 22 21 6 38 38 H 0.97000 * 119.99395 * 6.47443 * 24 23 4 39 39 H 0.96993 * 120.00437 * 186.47024 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.7856 -0.1827 2.4778 6 6 2.2515 -0.8426 3.6190 7 6 1.9890 -0.2788 4.9592 8 6 2.4497 -0.9297 6.1165 9 7 2.1965 -0.3980 7.2928 10 6 1.5107 0.7451 7.3949 11 6 1.2594 1.2824 8.6736 12 1 1.6198 0.7717 9.5543 13 6 0.5430 2.4795 8.8019 14 7 0.1073 3.0978 7.7361 15 14 0.2167 3.1957 10.4960 16 1 -0.5495 4.4605 10.3595 17 1 -0.5686 2.2255 11.3006 18 1 1.5086 3.4704 11.1745 19 7 1.0518 1.3889 6.3168 20 6 1.2713 0.9202 5.1074 21 6 2.9715 -2.0345 3.4890 22 6 3.2102 -2.5597 2.2395 23 6 2.7457 -1.8993 1.1046 24 7 2.9934 -2.4304 -0.1581 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5140 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9562 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.2322 0.7396 2.5749 33 1 3.0042 -1.8534 6.0411 34 1 -0.3890 3.9264 7.8250 35 1 0.9013 1.4475 4.2405 36 1 3.3362 -2.5445 4.3684 37 1 3.7629 -3.4820 2.1385 38 1 2.7525 -1.9271 -0.9516 39 1 3.4068 -3.3036 -0.2446 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244323041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:04 Heat of formation + Delta-G solvation = 54.711464 kcal Electronic energy + Delta-G solvation = -21172.581258 eV Core-core repulsion = 18079.169524 eV Total energy + Delta-G solvation = -3093.411734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.60738 -38.62709 -35.28331 -34.50598 -33.67136 -31.88682 -30.73765 -29.46594 -27.93352 -27.04889 -25.48614 -23.86031 -22.42504 -22.15023 -20.65998 -19.33344 -17.93153 -17.09720 -16.78555 -15.79812 -15.21461 -15.01543 -14.59360 -14.26601 -13.69268 -13.59929 -13.30974 -13.12051 -13.00531 -12.66809 -12.37085 -12.27139 -12.05406 -11.87258 -11.46692 -11.32989 -11.28047 -11.07706 -10.78203 -10.58786 -10.47658 -10.34886 -10.20452 -9.48638 -9.15566 -9.12593 -8.35794 -8.18802 -7.34241 -6.72941 -6.61409 -4.70869 1.73943 1.90032 2.79734 3.00036 3.00802 3.03772 3.14705 3.81724 4.09693 4.33910 4.70545 4.85945 4.96292 5.31315 5.34740 5.49223 5.61280 5.69383 5.76197 5.78868 5.84974 5.91332 5.93839 5.98224 6.02943 6.07304 6.26399 6.32625 6.34046 6.38082 6.47214 6.68872 6.84989 6.95046 6.98747 7.13552 7.33171 7.55819 7.63711 7.84029 7.95133 8.08042 8.42686 8.50144 9.07380 10.03274 10.22320 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.026784 B = 0.003874 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.162074 B = 7225.881499 C = 8086.199415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C -0.145 4.145 4 C -0.143 4.143 5 C -0.090 4.090 6 C -0.017 4.017 7 C -0.314 4.314 8 C 0.179 3.821 9 N -0.594 5.594 10 C 0.381 3.619 11 C -0.384 4.384 12 H 0.094 0.906 13 C 0.062 3.938 14 N -0.701 5.701 15 Si 0.921 3.079 16 H -0.275 1.275 17 H -0.262 1.262 18 H -0.262 1.262 19 N -0.507 5.507 20 C 0.174 3.826 21 C -0.101 4.101 22 C -0.183 4.183 23 C 0.181 3.819 24 N -0.886 5.886 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.130 0.870 34 H 0.278 0.722 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.391 0.609 39 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.859 -4.428 -13.534 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.062 4.062 3 C -0.202 4.202 4 C -0.147 4.147 5 C -0.109 4.109 6 C -0.020 4.020 7 C -0.324 4.324 8 C 0.005 3.995 9 N -0.312 5.312 10 C 0.147 3.853 11 C -0.417 4.417 12 H 0.112 0.888 13 C -0.166 4.166 14 N -0.321 5.321 15 Si 0.744 3.256 16 H -0.200 1.200 17 H -0.186 1.186 18 H -0.186 1.186 19 N -0.223 5.223 20 C -0.002 4.002 21 C -0.120 4.120 22 C -0.205 4.205 23 C 0.079 3.921 24 N -0.429 5.429 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.148 0.852 34 H 0.089 0.911 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.221 0.779 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.492 -3.724 -12.470 13.100 hybrid contribution 0.145 -0.290 -0.656 0.731 sum 1.637 -4.013 -13.126 13.823 Atomic orbital electron populations 1.21853 0.94705 1.01728 1.01729 1.19843 0.95599 0.95598 0.95144 1.21875 1.01067 0.95466 1.01780 1.19107 1.04293 0.96525 0.94796 1.20739 1.00013 0.99477 0.90643 1.18488 0.97408 0.94059 0.92036 1.19742 1.16676 1.03256 0.92720 1.22677 0.92525 0.96274 0.88029 1.68635 1.21455 1.14977 1.26153 1.19927 0.87096 0.85290 0.92981 1.19378 1.26607 1.03972 0.91784 0.88752 1.26187 0.94586 0.96694 0.99123 1.70135 1.19964 1.12005 1.30033 0.86153 0.79632 0.78587 0.81187 1.19980 1.18614 1.18608 1.69338 1.23170 1.32610 0.97199 1.23034 0.90631 0.90568 0.95978 1.20884 0.99044 0.95828 0.96206 1.20360 1.06802 1.01726 0.91645 1.17473 0.95967 0.93243 0.85456 1.42335 1.72849 1.22987 1.04731 0.92106 0.93011 0.92831 0.91821 0.92757 0.92996 0.92030 0.86480 0.85226 0.91065 0.85395 0.86571 0.87157 0.77925 0.78204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.05 37.16 0.34 -1.27 16 2 C -0.04 -0.50 3.04 -91.77 -0.28 -0.78 16 3 C -0.14 -1.64 8.95 37.16 0.33 -1.31 16 4 C -0.14 -2.09 4.80 -104.46 -0.50 -2.59 16 5 C -0.09 -1.53 8.14 -39.21 -0.32 -1.85 16 6 C -0.02 -0.31 5.89 -104.82 -0.62 -0.93 16 7 C -0.31 -7.03 5.94 -104.28 -0.62 -7.65 16 8 C 0.18 4.17 10.70 -16.81 -0.18 3.99 16 9 N -0.59 -15.81 10.33 -12.40 -0.13 -15.94 16 10 C 0.38 10.74 7.35 -158.13 -1.16 9.57 16 11 C -0.38 -10.40 9.34 -37.85 -0.35 -10.75 16 12 H 0.09 2.44 7.85 -52.49 -0.41 2.03 16 13 C 0.06 1.55 5.50 -17.34 -0.10 1.45 16 14 N -0.70 -18.08 11.40 55.55 0.63 -17.45 16 15 Si 0.92 18.11 29.56 -169.99 -5.02 13.08 16 16 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 17 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 18 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 19 N -0.51 -13.97 7.82 -12.40 -0.10 -14.07 16 20 C 0.17 4.20 10.70 -16.81 -0.18 4.02 16 21 C -0.10 -1.69 9.44 -39.20 -0.37 -2.06 16 22 C -0.18 -2.69 9.88 -39.42 -0.39 -3.08 16 23 C 0.18 2.52 6.74 -83.75 -0.56 1.96 16 24 N -0.89 -9.07 8.98 32.45 0.29 -8.78 16 25 H 0.06 0.74 7.69 -51.93 -0.40 0.35 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.64 5.66 -51.93 -0.29 0.35 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.76 7.12 -51.93 -0.37 0.39 16 32 H 0.12 1.95 5.30 -52.49 -0.28 1.67 16 33 H 0.13 2.56 6.32 -52.49 -0.33 2.23 16 34 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 35 H 0.13 2.72 6.32 -52.49 -0.33 2.39 16 36 H 0.12 1.83 6.28 -52.49 -0.33 1.50 16 37 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.39 3.43 6.45 -40.82 -0.26 3.17 16 39 H 0.39 3.23 8.84 -40.82 -0.36 2.87 16 LS Contribution 321.62 15.07 4.85 4.85 Total: -1.00 -30.20 321.62 -9.06 -39.26 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -4.62 Total: 10.33 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -4.96 Total: -11.28 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.70 Total: -56.24 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.02 Total: 13.08 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.20 -9.06 -39.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244323041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.973 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds