Wall clock time and date at job start Tue Mar 31 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00400 * 2 1 4 4 C 1.52995 * 109.47618 * 124.99782 * 3 2 1 5 5 N 1.46498 * 109.47351 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99784 * 180.02562 * 5 4 3 7 7 S 1.71194 * 120.00384 * 355.01621 * 6 5 4 8 8 N 1.34782 * 119.99671 * 175.28984 * 6 5 4 9 9 C 1.47078 * 120.88252 * 4.64712 * 8 6 5 10 10 C 1.53700 * 108.27904 * 128.75083 * 9 8 6 11 11 N 1.46901 * 109.25009 * 54.08658 * 10 9 8 12 12 C 1.46905 * 111.00034 * 172.61204 * 11 10 9 13 13 C 1.50707 * 109.46645 * 294.29992 * 12 11 10 14 14 H 1.07998 * 119.99665 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00018 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00190 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00106 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47159 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47263 * 120.00208 * 17 15 13 20 20 H 1.48506 * 109.46948 * 239.99956 * 17 15 13 21 21 C 1.46907 * 111.26856 * 296.75192 * 11 10 9 22 22 C 1.47082 * 120.88068 * 184.92391 * 8 6 5 23 23 H 1.07996 * 120.00419 * 180.02562 * 1 2 3 24 24 H 1.08006 * 119.99680 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.00164 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47263 * 4.99912 * 3 2 1 27 27 H 1.09001 * 109.46938 * 244.99879 * 3 2 1 28 28 H 1.09002 * 109.47119 * 60.00116 * 4 3 2 29 29 H 1.09001 * 109.47046 * 300.00031 * 4 3 2 30 30 H 0.96995 * 120.00258 * 359.97438 * 5 4 3 31 31 H 1.09000 * 109.63406 * 248.52448 * 9 8 6 32 32 H 1.09005 * 109.63022 * 9.10443 * 9 8 6 33 33 H 1.08998 * 109.64839 * 294.08696 * 10 9 8 34 34 H 1.08993 * 109.42389 * 173.94539 * 10 9 8 35 35 H 1.08995 * 109.47026 * 54.29366 * 12 11 10 36 36 H 1.08997 * 109.47412 * 174.29911 * 12 11 10 37 37 H 0.96996 * 120.00227 * 179.97438 * 16 15 13 38 38 H 1.08988 * 109.49441 * 303.14895 * 21 11 10 39 39 H 1.08995 * 109.49183 * 183.06752 * 21 11 10 40 40 H 1.08993 * 109.62628 * 350.90135 * 22 8 6 41 41 H 1.09007 * 109.62266 * 111.47791 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7680 2.6015 1.1812 6 6 4.6852 2.8501 2.1370 7 16 4.9034 1.7415 3.4231 8 7 5.4268 3.9743 2.0832 9 6 5.1825 4.9911 1.0489 10 6 5.0376 6.3563 1.7399 11 7 6.2154 6.5997 2.5834 12 6 6.2022 7.9654 3.1246 13 6 6.3493 8.9541 1.9967 14 1 6.4436 8.6029 0.9798 15 6 6.3635 10.3067 2.2631 16 7 6.2482 10.7343 3.5015 17 14 6.5465 11.5321 0.8652 18 1 6.6582 10.8010 -0.4225 19 1 5.3583 12.4221 0.8284 20 1 7.7693 12.3475 1.0787 21 6 6.3127 5.6071 3.6619 22 6 6.5058 4.2140 3.0535 23 1 -0.5400 -0.9352 0.0004 24 1 -0.5400 0.9354 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3587 2.1317 0.0896 27 1 2.6213 1.4025 -0.9314 28 1 3.7400 0.5065 1.0921 29 1 2.4772 1.2357 2.1130 30 1 3.5938 3.2621 0.4927 31 1 6.0221 5.0161 0.3543 32 1 4.2652 4.7526 0.5104 33 1 4.1401 6.3607 2.3584 34 1 4.9632 7.1387 0.9846 35 1 5.2592 8.1421 3.6419 36 1 7.0289 8.0869 3.8244 37 1 6.2585 11.6859 3.6890 38 1 5.3975 5.6219 4.2536 39 1 7.1630 5.8461 4.3006 40 1 6.4639 3.4615 3.8409 41 1 7.4703 4.1657 2.5478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247625453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:16 Heat of formation + Delta-G solvation = 46.558904 kcal Electronic energy + Delta-G solvation = -19971.542578 eV Core-core repulsion = 17013.221274 eV Total energy + Delta-G solvation = -2958.321304 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.94107 -37.74071 -35.83744 -34.24295 -32.57408 -31.17938 -29.92904 -28.21802 -25.85034 -24.27522 -23.57266 -22.58358 -21.64139 -20.33560 -19.67245 -18.11095 -17.26349 -16.43603 -16.08137 -15.48121 -15.03254 -14.79806 -14.59277 -14.53504 -14.45772 -13.91801 -13.75148 -13.29804 -12.80058 -12.47774 -12.24850 -12.02539 -11.52628 -11.49182 -11.36564 -11.23717 -11.07391 -11.03953 -10.79572 -10.69710 -10.57523 -9.99682 -9.77795 -9.37570 -8.87730 -8.56711 -7.71465 -7.47155 -7.31863 -6.14958 -4.17967 1.49085 1.82007 2.02216 2.66489 3.17650 3.21976 3.30116 3.32933 4.29450 4.42665 4.53885 4.57690 4.70111 4.87988 4.94823 5.11575 5.17303 5.21519 5.22209 5.38052 5.45705 5.51866 5.58351 5.61253 5.73567 5.92744 6.06399 6.17925 6.21355 6.25596 6.28055 6.33841 6.43722 6.82051 7.09046 7.15912 7.22584 7.62444 7.87479 7.98908 8.34417 8.88936 9.47121 10.95747 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.022583 B = 0.003433 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.599444 B = 8154.548190 C = 9071.430228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.150 4.150 3 C -0.108 4.108 4 C 0.131 3.869 5 N -0.694 5.694 6 C 0.569 3.431 7 S -0.671 6.671 8 N -0.559 5.559 9 C 0.097 3.903 10 C 0.053 3.947 11 N -0.536 5.536 12 C 0.193 3.807 13 C -0.513 4.513 14 H 0.064 0.936 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.283 1.283 21 C 0.041 3.959 22 C 0.109 3.891 23 H 0.100 0.900 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.396 0.604 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.028 0.972 34 H 0.103 0.897 35 H -0.007 1.007 36 H 0.035 0.965 37 H 0.262 0.738 38 H 0.031 0.969 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 -16.374 -8.622 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.169 4.169 3 C -0.146 4.146 4 C 0.007 3.993 5 N -0.327 5.327 6 C 0.209 3.791 7 S -0.543 6.543 8 N -0.267 5.267 9 C -0.028 4.028 10 C -0.077 4.077 11 N -0.261 5.261 12 C 0.069 3.931 13 C -0.551 4.551 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.209 1.209 21 C -0.088 4.088 22 C -0.014 4.014 23 H 0.118 0.882 24 H 0.115 0.885 25 H 0.132 0.868 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.235 0.765 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.121 0.879 35 H 0.010 0.990 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.107 0.893 40 H 0.142 0.858 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.197 -16.953 -8.007 20.082 hybrid contribution -0.880 1.862 -1.181 2.374 sum -8.076 -15.091 -9.188 19.427 Atomic orbital electron populations 1.23909 0.95887 1.02128 1.00371 1.22692 0.95923 0.97787 1.00484 1.20994 0.98334 0.96902 0.98386 1.21610 0.94210 0.84002 0.99463 1.45093 1.38867 1.20814 1.27928 1.22157 0.81235 0.87166 0.88584 1.93309 1.84579 1.46464 1.29922 1.47512 1.32046 1.16043 1.31071 1.22380 1.01472 0.88457 0.90509 1.22379 0.92451 0.94436 0.98411 1.62145 1.38055 1.05397 1.20537 1.19747 0.96239 0.81549 0.95587 1.21141 1.50054 0.90249 0.93674 0.91814 1.24999 0.95264 0.98545 0.95729 1.69962 1.50220 1.14852 1.18396 0.86440 0.77714 0.81077 0.82159 1.19678 1.21081 1.20898 1.22434 1.01455 0.90968 0.93983 1.22476 0.87444 0.98728 0.92761 0.88165 0.88503 0.86774 0.90796 0.90319 0.89737 0.89411 0.76519 0.89133 0.90938 0.95380 0.87930 0.98960 0.94736 0.92800 0.95032 0.89285 0.85837 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.15 14.32 29.02 0.42 -0.74 16 2 C -0.15 -0.98 9.52 -36.02 -0.34 -1.32 16 3 C -0.11 -0.70 5.77 -27.89 -0.16 -0.86 16 4 C 0.13 1.20 5.12 -4.05 -0.02 1.18 16 5 N -0.69 -7.19 5.47 -62.03 -0.34 -7.53 16 6 C 0.57 8.00 7.72 -86.91 -0.67 7.33 16 7 S -0.67 -11.83 27.05 -107.50 -2.91 -14.74 16 8 N -0.56 -7.79 3.00 -174.20 -0.52 -8.31 16 9 C 0.10 1.22 6.57 -3.36 -0.02 1.20 16 10 C 0.05 0.89 5.47 -3.46 -0.02 0.87 16 11 N -0.54 -10.50 4.62 -235.46 -1.09 -11.58 16 12 C 0.19 4.74 4.72 -4.97 -0.02 4.71 16 13 C -0.51 -13.47 8.41 -34.44 -0.29 -13.76 16 14 H 0.06 1.63 7.13 -52.49 -0.37 1.26 16 15 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -25.70 13.29 55.43 0.74 -24.96 16 17 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 22 C 0.11 1.62 6.51 -3.60 -0.02 1.59 16 23 H 0.10 0.53 8.06 -52.49 -0.42 0.10 16 24 H 0.10 0.57 7.84 -52.48 -0.41 0.15 16 25 H 0.11 0.67 8.06 -52.48 -0.42 0.25 16 26 H 0.07 0.46 7.79 -51.93 -0.40 0.05 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 29 H 0.09 0.96 7.89 -51.93 -0.41 0.55 16 30 H 0.40 3.20 6.00 -40.82 -0.25 2.96 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.68 5.73 -51.93 -0.30 0.38 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.10 1.82 6.67 -51.93 -0.35 1.47 16 35 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 36 H 0.03 0.91 7.97 -51.93 -0.41 0.50 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.03 0.58 8.14 -51.94 -0.42 0.15 16 39 H 0.09 1.48 7.99 -51.93 -0.41 1.07 16 40 H 0.12 1.94 5.99 -50.65 -0.30 1.64 16 41 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -31.48 341.84 -11.82 -43.31 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.56 Total: 0.77 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.28 Total: 2.31 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -1.21 Total: -52.39 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: -11.83 SS G_CDS: -2.91 Total: -14.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.48 -11.82 -43.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247625453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.865 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds