Wall clock time and date at job start Tue Mar 31 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00400 * 2 1 4 4 C 1.52995 * 109.47618 * 124.99782 * 3 2 1 5 5 N 1.46498 * 109.47351 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99784 * 180.02562 * 5 4 3 7 7 S 1.71194 * 120.00384 * 355.01621 * 6 5 4 8 8 N 1.34782 * 119.99671 * 175.28984 * 6 5 4 9 9 C 1.47078 * 120.88252 * 4.64712 * 8 6 5 10 10 C 1.53700 * 108.27904 * 128.75083 * 9 8 6 11 11 N 1.46901 * 109.25009 * 54.08658 * 10 9 8 12 12 C 1.46905 * 111.00034 * 172.61204 * 11 10 9 13 13 C 1.50707 * 109.46645 * 294.29992 * 12 11 10 14 14 H 1.07998 * 119.99665 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00018 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00190 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00106 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47159 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47263 * 120.00208 * 17 15 13 20 20 H 1.48506 * 109.46948 * 239.99956 * 17 15 13 21 21 C 1.46907 * 111.26856 * 296.75192 * 11 10 9 22 22 C 1.47082 * 120.88068 * 184.92391 * 8 6 5 23 23 H 1.07996 * 120.00419 * 180.02562 * 1 2 3 24 24 H 1.08006 * 119.99680 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.00164 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47263 * 4.99912 * 3 2 1 27 27 H 1.09001 * 109.46938 * 244.99879 * 3 2 1 28 28 H 1.09002 * 109.47119 * 60.00116 * 4 3 2 29 29 H 1.09001 * 109.47046 * 300.00031 * 4 3 2 30 30 H 0.96995 * 120.00258 * 359.97438 * 5 4 3 31 31 H 1.09000 * 109.63406 * 248.52448 * 9 8 6 32 32 H 1.09005 * 109.63022 * 9.10443 * 9 8 6 33 33 H 1.08998 * 109.64839 * 294.08696 * 10 9 8 34 34 H 1.08993 * 109.42389 * 173.94539 * 10 9 8 35 35 H 1.08995 * 109.47026 * 54.29366 * 12 11 10 36 36 H 1.08997 * 109.47412 * 174.29911 * 12 11 10 37 37 H 0.96996 * 120.00227 * 179.97438 * 16 15 13 38 38 H 1.08988 * 109.49441 * 303.14895 * 21 11 10 39 39 H 1.08995 * 109.49183 * 183.06752 * 21 11 10 40 40 H 1.08993 * 109.62628 * 350.90135 * 22 8 6 41 41 H 1.09007 * 109.62266 * 111.47791 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7680 2.6015 1.1812 6 6 4.6852 2.8501 2.1370 7 16 4.9034 1.7415 3.4231 8 7 5.4268 3.9743 2.0832 9 6 5.1825 4.9911 1.0489 10 6 5.0376 6.3563 1.7399 11 7 6.2154 6.5997 2.5834 12 6 6.2022 7.9654 3.1246 13 6 6.3493 8.9541 1.9967 14 1 6.4436 8.6029 0.9798 15 6 6.3635 10.3067 2.2631 16 7 6.2482 10.7343 3.5015 17 14 6.5465 11.5321 0.8652 18 1 6.6582 10.8010 -0.4225 19 1 5.3583 12.4221 0.8284 20 1 7.7693 12.3475 1.0787 21 6 6.3127 5.6071 3.6619 22 6 6.5058 4.2140 3.0535 23 1 -0.5400 -0.9352 0.0004 24 1 -0.5400 0.9354 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3587 2.1317 0.0896 27 1 2.6213 1.4025 -0.9314 28 1 3.7400 0.5065 1.0921 29 1 2.4772 1.2357 2.1130 30 1 3.5938 3.2621 0.4927 31 1 6.0221 5.0161 0.3543 32 1 4.2652 4.7526 0.5104 33 1 4.1401 6.3607 2.3584 34 1 4.9632 7.1387 0.9846 35 1 5.2592 8.1421 3.6419 36 1 7.0289 8.0869 3.8244 37 1 6.2585 11.6859 3.6890 38 1 5.3975 5.6219 4.2536 39 1 7.1630 5.8461 4.3006 40 1 6.4639 3.4615 3.8409 41 1 7.4703 4.1657 2.5478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247625453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:15 Heat of formation + Delta-G solvation = 26.868641 kcal Electronic energy + Delta-G solvation = -19972.396412 eV Core-core repulsion = 17013.221274 eV Total energy + Delta-G solvation = -2959.175138 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.13293 -38.87566 -36.91344 -35.30905 -34.39832 -32.43514 -30.99436 -29.56440 -27.43675 -25.56972 -24.63336 -23.76612 -23.24273 -21.24850 -20.59583 -19.19183 -18.62829 -18.21551 -16.88897 -16.76749 -16.30776 -16.11025 -15.91810 -15.70590 -15.48710 -15.31431 -15.19464 -14.20120 -14.00304 -13.80779 -13.38152 -13.18162 -12.94596 -12.84833 -12.70439 -12.54543 -12.42548 -12.33066 -12.01386 -11.97405 -11.96970 -11.77417 -11.28257 -10.64347 -10.26560 -9.95126 -9.21471 -8.97745 -8.69731 -8.21687 -6.32508 0.33341 0.79883 1.31839 1.42338 1.44000 1.56106 1.57047 2.20357 2.39566 3.08272 3.14895 3.66420 3.83751 3.87307 3.96874 4.05993 4.11684 4.13008 4.29182 4.36749 4.44410 4.60863 4.71480 4.75116 4.83946 4.84431 4.89635 4.91150 5.05238 5.14141 5.15627 5.21762 5.42254 5.62319 5.67255 5.76158 5.86457 5.99140 6.17402 6.27625 6.48071 6.83587 7.37976 8.89844 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.022583 B = 0.003433 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.599444 B = 8154.548190 C = 9071.430228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.162 4.162 3 C -0.097 4.097 4 C 0.133 3.867 5 N -0.670 5.670 6 C 0.585 3.415 7 S -0.743 6.743 8 N -0.560 5.560 9 C 0.108 3.892 10 C 0.051 3.949 11 N -0.537 5.537 12 C 0.208 3.792 13 C -0.520 4.520 14 H 0.073 0.927 15 C 0.000 4.000 16 N -0.937 5.937 17 Si 0.970 3.030 18 H -0.256 1.256 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.045 3.955 22 C 0.122 3.878 23 H 0.107 0.893 24 H 0.100 0.900 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.413 0.587 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.015 0.985 34 H 0.096 0.904 35 H -0.041 1.041 36 H 0.006 0.994 37 H 0.264 0.736 38 H 0.015 0.985 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.321 -16.803 -11.742 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.180 4.180 3 C -0.135 4.135 4 C 0.010 3.990 5 N -0.302 5.302 6 C 0.221 3.779 7 S -0.616 6.616 8 N -0.268 5.268 9 C -0.016 4.016 10 C -0.078 4.078 11 N -0.261 5.261 12 C 0.082 3.918 13 C -0.558 4.558 14 H 0.091 0.909 15 C -0.198 4.198 16 N -0.577 5.577 17 Si 0.795 3.205 18 H -0.180 1.180 19 H -0.208 1.208 20 H -0.209 1.209 21 C -0.084 4.084 22 C -0.001 4.001 23 H 0.126 0.874 24 H 0.119 0.881 25 H 0.135 0.865 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.254 0.746 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.034 0.966 34 H 0.114 0.886 35 H -0.023 1.023 36 H 0.024 0.976 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.106 0.894 40 H 0.135 0.865 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.796 -17.410 -11.177 22.109 hybrid contribution -0.769 1.964 -0.207 2.119 sum -8.565 -15.446 -11.384 21.013 Atomic orbital electron populations 1.24071 0.95954 1.02759 0.99677 1.22782 0.96154 0.98016 1.01078 1.20929 0.97796 0.97204 0.97562 1.21665 0.94231 0.83053 1.00072 1.45102 1.36957 1.21422 1.26734 1.21700 0.81639 0.86323 0.88262 1.93495 1.86299 1.48653 1.33113 1.47474 1.31744 1.16312 1.31225 1.22421 1.04297 0.85256 0.89645 1.22424 0.90704 0.97046 0.97648 1.62068 1.39685 1.03379 1.21012 1.19385 0.93309 0.84493 0.94652 1.21475 1.49267 0.90770 0.94288 0.90924 1.25947 0.94890 1.00764 0.98220 1.70103 1.51534 1.15308 1.20780 0.85313 0.77445 0.78355 0.79365 1.17966 1.20778 1.20912 1.22430 1.00675 0.91805 0.93518 1.22258 0.88436 0.96423 0.93024 0.87450 0.88120 0.86471 0.90013 0.88699 0.90328 0.91170 0.74560 0.87477 0.86884 0.96635 0.88608 1.02304 0.97579 0.92748 0.96644 0.89404 0.86525 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 14.32 67.79 0.97 -0.98 16 2 C -0.16 -1.76 9.52 25.65 0.24 -1.52 16 3 C -0.10 -0.97 5.77 29.85 0.17 -0.79 16 4 C 0.13 2.16 5.12 86.38 0.44 2.61 16 5 N -0.67 -11.88 5.47 -350.17 -1.91 -13.80 16 6 C 0.58 15.31 7.72 179.05 1.38 16.69 16 7 S -0.74 -26.12 27.05 -56.49 -1.53 -27.65 16 8 N -0.56 -14.38 3.00 -705.04 -2.12 -16.50 16 9 C 0.11 2.34 6.57 86.50 0.57 2.91 16 10 C 0.05 1.64 5.47 86.54 0.47 2.11 16 11 N -0.54 -20.96 4.62 -898.87 -4.15 -25.12 16 12 C 0.21 10.48 4.72 85.56 0.40 10.88 16 13 C -0.52 -27.35 8.41 25.60 0.22 -27.14 16 14 H 0.07 3.62 7.13 -2.91 -0.02 3.60 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 16 N -0.94 -54.88 13.29 21.44 0.28 -54.59 16 17 Si 0.97 41.85 29.54 68.60 2.03 43.88 16 18 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 C 0.04 1.56 5.62 86.38 0.49 2.04 16 22 C 0.12 3.51 6.51 86.35 0.56 4.07 16 23 H 0.11 0.94 8.06 -2.91 -0.02 0.91 16 24 H 0.10 0.95 7.84 -2.91 -0.02 0.93 16 25 H 0.12 1.18 8.06 -2.91 -0.02 1.16 16 26 H 0.08 0.72 7.79 -2.39 -0.02 0.70 16 27 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 28 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 29 H 0.07 1.46 7.89 -2.39 -0.02 1.44 16 30 H 0.41 4.83 6.00 -92.71 -0.56 4.27 16 31 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.11 1.55 5.73 -2.38 -0.01 1.53 16 33 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.10 3.24 6.67 -2.39 -0.02 3.22 16 35 H -0.04 -2.29 8.12 -2.39 -0.02 -2.31 16 36 H 0.01 0.34 7.97 -2.39 -0.02 0.32 16 37 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 38 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.09 3.02 7.99 -2.39 -0.02 3.00 16 40 H 0.12 3.64 5.99 -3.21 -0.02 3.62 16 41 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 Total: -1.00 -70.12 341.84 -0.58 -70.70 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.44 Total: 11.74 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 6.38 Total: 11.34 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -7.90 Total: -110.01 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: -26.12 SS G_CDS: -1.53 Total: -27.65 kcal Total: -70.12 -0.58 -70.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247625453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.567 kcal (2) G-P(sol) polarization free energy of solvation -70.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds