Wall clock time and date at job start Tue Mar 31 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47341 * 2 1 4 4 C 1.46903 * 111.00282 * 163.57912 * 3 2 1 5 5 C 1.50701 * 109.46869 * 293.95019 * 4 3 2 6 6 H 1.08003 * 120.00010 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99817 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99815 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47103 * 90.00036 * 9 7 5 11 11 H 1.48497 * 109.47111 * 210.00163 * 9 7 5 12 12 H 1.48497 * 109.47032 * 330.00471 * 9 7 5 13 13 C 1.46907 * 111.00061 * 287.53105 * 3 2 1 14 14 C 1.50695 * 109.47324 * 164.02269 * 13 3 2 15 15 C 1.34423 * 125.01441 * 95.34339 * 14 13 3 16 16 C 1.46294 * 107.03618 * 179.97438 * 15 14 13 17 17 C 1.39904 * 133.82543 * 180.02562 * 16 15 14 18 18 C 1.36208 * 119.97218 * 179.97438 * 17 16 15 19 19 C 1.40268 * 120.37130 * 0.03887 * 18 17 16 20 20 C 1.43200 * 119.84084 * 179.97438 * 19 18 17 21 21 N 9.04480 * 114.85631 * 180.34868 * 3 1 2 22 22 C 1.39302 * 120.32729 * 359.95608 * 19 18 17 23 23 C 1.38721 * 119.66069 * 0.02562 * 22 19 18 24 24 N 1.36635 * 125.02209 * 275.04767 * 14 13 3 25 25 H 0.96996 * 125.06471 * 359.97438 * 24 14 13 26 26 H 1.09002 * 109.46516 * 305.93924 * 1 2 3 27 27 H 1.08998 * 109.47194 * 65.93554 * 1 2 3 28 28 H 1.09002 * 109.46838 * 185.93973 * 1 2 3 29 29 H 1.09008 * 109.47091 * 239.99883 * 2 1 3 30 30 H 1.08995 * 109.47331 * 119.99920 * 2 1 3 31 31 H 1.08993 * 109.46960 * 53.95419 * 4 3 2 32 32 H 1.09001 * 109.47024 * 173.95224 * 4 3 2 33 33 H 0.97005 * 120.00104 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.47163 * 284.03006 * 13 3 2 35 35 H 1.09009 * 109.46847 * 44.02640 * 13 3 2 36 36 H 1.08003 * 126.48209 * 359.93710 * 15 14 13 37 37 H 1.08003 * 120.01092 * 0.02562 * 17 16 15 38 38 H 1.07994 * 119.81605 * 180.02562 * 18 17 16 39 39 H 1.07997 * 120.17395 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4355 1.4428 0.3877 5 6 3.5809 1.0112 1.8242 6 1 2.7089 0.7223 2.3922 7 6 4.8273 0.9840 2.4131 8 7 5.8892 1.3352 1.7212 9 14 5.0077 0.4483 4.1935 10 1 5.2232 -1.0200 4.2492 11 1 6.1698 1.1427 4.8040 12 1 3.7736 0.7963 4.9425 13 6 1.8058 2.0190 -1.3078 14 6 1.9451 3.5132 -1.1704 15 6 3.0692 4.2087 -1.4146 16 6 2.7659 5.6169 -1.1594 17 6 3.5119 6.7980 -1.2365 18 6 2.9317 7.9907 -0.9268 19 6 1.5876 8.0435 -0.5291 20 6 0.9892 9.3036 -0.2055 21 7 0.5142 10.3034 0.0499 22 6 0.8318 6.8761 -0.4476 23 6 1.4152 5.6573 -0.7617 24 7 0.9460 4.3618 -0.7849 25 1 0.0420 4.0922 -0.5594 26 1 -0.3632 0.6032 0.8321 27 1 -0.3633 0.4190 -0.9383 28 1 -0.3633 -1.0222 0.1063 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.0148 0.7773 -0.2521 32 1 3.8013 2.4635 0.2762 33 1 6.7661 1.3165 2.1355 34 1 2.5462 1.6486 -2.0167 35 1 0.8055 1.7791 -1.6686 36 1 4.0172 3.8043 -1.7374 37 1 4.5472 6.7640 -1.5423 38 1 3.5097 8.9009 -0.9876 39 1 -0.2027 6.9196 -0.1407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249429239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:32 Heat of formation + Delta-G solvation = 85.807527 kcal Electronic energy + Delta-G solvation = -21052.011435 eV Core-core repulsion = 17959.948128 eV Total energy + Delta-G solvation = -3092.063307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.19582 -37.96467 -36.86270 -35.75009 -32.69058 -32.04255 -30.85978 -29.60209 -29.07932 -27.35145 -25.07453 -22.62997 -22.37743 -22.26373 -20.39751 -19.88998 -18.71216 -16.79394 -16.50205 -16.05625 -14.98436 -14.87358 -14.71569 -14.28166 -14.16081 -13.90969 -13.75951 -13.48584 -13.42076 -12.92245 -12.72559 -12.61758 -12.23378 -12.06801 -11.91798 -11.53779 -11.30625 -11.16940 -11.03895 -10.91206 -10.74902 -10.55057 -10.27919 -9.90217 -9.56902 -9.23372 -8.46864 -8.10655 -7.58181 -7.38373 -6.05644 -4.06528 0.75837 1.53207 2.62541 2.71033 3.18937 3.25100 3.29246 3.36471 3.40078 3.99532 4.03590 4.40017 4.72669 4.80540 5.00980 5.11363 5.30148 5.31182 5.37754 5.42845 5.56614 5.67000 5.75872 5.79909 5.86340 5.96030 6.06204 6.14379 6.21233 6.31886 6.50298 6.55860 6.66090 6.79222 6.96130 7.20469 7.23330 7.28176 7.48482 7.67413 7.73483 8.02074 8.10225 8.45642 8.99815 9.57372 11.05105 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.004420 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.238212 B = 6332.839342 C = 7278.599620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 N -0.534 5.534 4 C 0.188 3.812 5 C -0.509 4.509 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.103 3.897 14 C 0.131 3.869 15 C -0.199 4.199 16 C -0.070 4.070 17 C -0.070 4.070 18 C -0.107 4.107 19 C -0.029 4.029 20 C 0.268 3.732 21 N -0.437 5.437 22 C -0.067 4.067 23 C 0.087 3.913 24 N -0.577 5.577 25 H 0.416 0.584 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.021 0.979 30 H 0.089 0.911 31 H -0.009 1.009 32 H 0.043 0.957 33 H 0.261 0.739 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.150 0.850 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.247 4.573 -8.597 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 N -0.259 5.259 4 C 0.064 3.936 5 C -0.548 4.548 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.026 4.026 14 C 0.021 3.979 15 C -0.224 4.224 16 C -0.076 4.076 17 C -0.088 4.088 18 C -0.129 4.129 19 C -0.034 4.034 20 C -0.047 4.047 21 N -0.113 5.113 22 C -0.091 4.091 23 C -0.020 4.020 24 N -0.179 5.179 25 H 0.253 0.747 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.108 0.892 31 H 0.009 0.991 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.167 0.833 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.168 6.324 -7.806 13.601 hybrid contribution 0.503 -1.272 0.545 1.472 sum -8.665 5.052 -7.261 12.383 Atomic orbital electron populations 1.21834 0.96700 1.00709 1.01124 1.21989 0.93967 0.89895 1.01398 1.62208 1.24203 1.16222 1.23257 1.19849 0.80269 0.97752 0.95767 1.21108 0.92841 1.44355 0.96476 0.92046 1.24943 0.95859 0.95552 0.97996 1.69942 0.98593 1.48265 1.36622 0.86556 0.77738 0.78503 0.84976 1.20777 1.21219 1.19867 1.20747 1.01315 0.87024 0.93497 1.20359 0.87762 0.92235 0.97535 1.21555 0.98504 0.90330 1.11978 1.19420 0.92588 0.94094 1.01496 1.20171 0.99627 0.90014 0.99016 1.20446 0.92674 0.98360 1.01377 1.15463 0.94065 0.85683 1.08209 1.25724 0.93074 0.92838 0.93018 1.81221 1.08709 1.11295 1.10083 1.19842 0.99360 0.88540 1.01338 1.17865 0.94281 0.85308 1.04592 1.41650 1.12939 1.04131 1.59194 0.74739 0.92191 0.93949 0.93128 0.96069 0.89241 0.99142 0.93940 0.92914 0.92613 0.90777 0.83280 0.85061 0.85465 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.88 37.16 0.37 -1.59 16 2 C 0.06 0.95 5.53 -3.83 -0.02 0.93 16 3 N -0.53 -10.14 4.39 -237.51 -1.04 -11.18 16 4 C 0.19 4.52 4.57 -4.97 -0.02 4.50 16 5 C -0.51 -13.62 8.28 -34.44 -0.29 -13.90 16 6 H 0.06 1.64 7.26 -52.48 -0.38 1.26 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.10 1.57 5.33 -4.97 -0.03 1.54 16 14 C 0.13 2.00 6.06 -81.80 -0.50 1.50 16 15 C -0.20 -3.16 9.76 -37.69 -0.37 -3.53 16 16 C -0.07 -1.02 6.37 -105.04 -0.67 -1.69 16 17 C -0.07 -0.87 10.03 -39.69 -0.40 -1.27 16 18 C -0.11 -1.21 9.67 -39.55 -0.38 -1.59 16 19 C -0.03 -0.35 5.74 -106.81 -0.61 -0.96 16 20 C 0.27 3.43 15.30 -22.47 -0.34 3.08 16 21 N -0.44 -6.39 18.54 41.84 0.78 -5.62 16 22 C -0.07 -0.79 9.77 -39.01 -0.38 -1.18 16 23 C 0.09 1.19 7.26 -84.00 -0.61 0.58 16 24 N -0.58 -7.65 6.07 -6.98 -0.04 -7.69 16 25 H 0.42 4.43 8.96 -40.82 -0.37 4.06 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.04 0.49 6.77 -51.93 -0.35 0.14 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.02 0.35 8.05 -51.92 -0.42 -0.07 16 30 H 0.09 1.74 6.58 -51.93 -0.34 1.40 16 31 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 32 H 0.04 1.09 6.35 -51.93 -0.33 0.77 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.06 0.85 8.04 -51.93 -0.42 0.43 16 35 H 0.07 0.94 6.42 -51.92 -0.33 0.60 16 36 H 0.15 2.36 8.06 -52.48 -0.42 1.94 16 37 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 335.53 15.07 5.06 5.06 Total: -1.00 -30.14 335.53 -8.92 -39.06 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.03 Total: 1.24 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -4.35 Total: -12.08 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.43 Total: -49.39 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.14 -8.92 -39.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249429239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.863 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds