Wall clock time and date at job start Tue Mar 31 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47341 * 2 1 4 4 C 1.46903 * 111.00282 * 163.57912 * 3 2 1 5 5 C 1.50701 * 109.46869 * 293.95019 * 4 3 2 6 6 H 1.08003 * 120.00010 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99817 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99815 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47103 * 90.00036 * 9 7 5 11 11 H 1.48497 * 109.47111 * 210.00163 * 9 7 5 12 12 H 1.48497 * 109.47032 * 330.00471 * 9 7 5 13 13 C 1.46907 * 111.00061 * 287.53105 * 3 2 1 14 14 C 1.50695 * 109.47324 * 164.02269 * 13 3 2 15 15 C 1.34423 * 125.01441 * 95.34339 * 14 13 3 16 16 C 1.46294 * 107.03618 * 179.97438 * 15 14 13 17 17 C 1.39904 * 133.82543 * 180.02562 * 16 15 14 18 18 C 1.36208 * 119.97218 * 179.97438 * 17 16 15 19 19 C 1.40268 * 120.37130 * 0.03887 * 18 17 16 20 20 C 1.43200 * 119.84084 * 179.97438 * 19 18 17 21 21 N 9.04480 * 114.85631 * 180.34868 * 3 1 2 22 22 C 1.39302 * 120.32729 * 359.95608 * 19 18 17 23 23 C 1.38721 * 119.66069 * 0.02562 * 22 19 18 24 24 N 1.36635 * 125.02209 * 275.04767 * 14 13 3 25 25 H 0.96996 * 125.06471 * 359.97438 * 24 14 13 26 26 H 1.09002 * 109.46516 * 305.93924 * 1 2 3 27 27 H 1.08998 * 109.47194 * 65.93554 * 1 2 3 28 28 H 1.09002 * 109.46838 * 185.93973 * 1 2 3 29 29 H 1.09008 * 109.47091 * 239.99883 * 2 1 3 30 30 H 1.08995 * 109.47331 * 119.99920 * 2 1 3 31 31 H 1.08993 * 109.46960 * 53.95419 * 4 3 2 32 32 H 1.09001 * 109.47024 * 173.95224 * 4 3 2 33 33 H 0.97005 * 120.00104 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.47163 * 284.03006 * 13 3 2 35 35 H 1.09009 * 109.46847 * 44.02640 * 13 3 2 36 36 H 1.08003 * 126.48209 * 359.93710 * 15 14 13 37 37 H 1.08003 * 120.01092 * 0.02562 * 17 16 15 38 38 H 1.07994 * 119.81605 * 180.02562 * 18 17 16 39 39 H 1.07997 * 120.17395 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4355 1.4428 0.3877 5 6 3.5809 1.0112 1.8242 6 1 2.7089 0.7223 2.3922 7 6 4.8273 0.9840 2.4131 8 7 5.8892 1.3352 1.7212 9 14 5.0077 0.4483 4.1935 10 1 5.2232 -1.0200 4.2492 11 1 6.1698 1.1427 4.8040 12 1 3.7736 0.7963 4.9425 13 6 1.8058 2.0190 -1.3078 14 6 1.9451 3.5132 -1.1704 15 6 3.0692 4.2087 -1.4146 16 6 2.7659 5.6169 -1.1594 17 6 3.5119 6.7980 -1.2365 18 6 2.9317 7.9907 -0.9268 19 6 1.5876 8.0435 -0.5291 20 6 0.9892 9.3036 -0.2055 21 7 0.5142 10.3034 0.0499 22 6 0.8318 6.8761 -0.4476 23 6 1.4152 5.6573 -0.7617 24 7 0.9460 4.3618 -0.7849 25 1 0.0420 4.0922 -0.5594 26 1 -0.3632 0.6032 0.8321 27 1 -0.3633 0.4190 -0.9383 28 1 -0.3633 -1.0222 0.1063 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.0148 0.7773 -0.2521 32 1 3.8013 2.4635 0.2762 33 1 6.7661 1.3165 2.1355 34 1 2.5462 1.6486 -2.0167 35 1 0.8055 1.7791 -1.6686 36 1 4.0172 3.8043 -1.7374 37 1 4.5472 6.7640 -1.5423 38 1 3.5097 8.9009 -0.9876 39 1 -0.2027 6.9196 -0.1407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249429239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:32 Heat of formation + Delta-G solvation = 68.417324 kcal Electronic energy + Delta-G solvation = -21052.765531 eV Core-core repulsion = 17959.948128 eV Total energy + Delta-G solvation = -3092.817403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.26155 -39.12115 -38.19828 -36.83945 -34.71655 -33.09123 -32.03683 -30.94087 -30.23605 -28.86078 -26.57469 -24.26744 -23.47827 -23.34548 -21.69284 -21.19515 -19.73963 -18.50228 -17.91817 -17.12657 -16.65452 -16.23227 -15.79424 -15.70108 -15.40338 -15.22036 -14.76513 -14.63853 -14.55969 -14.23537 -14.07113 -13.86198 -13.68261 -13.48407 -13.22627 -12.80143 -12.68092 -12.64820 -12.41534 -12.27745 -12.25240 -11.94056 -11.78792 -11.53237 -11.17830 -10.65822 -10.54355 -9.16363 -9.01099 -8.60697 -8.15223 -6.23030 -0.26064 0.54772 1.41591 1.43229 1.53165 1.55894 1.61982 2.12887 2.19781 2.43166 2.97452 3.03211 3.18199 3.42301 3.77851 3.86982 4.15636 4.22560 4.29624 4.36284 4.41594 4.54508 4.62351 4.63654 4.78707 4.79854 5.01177 5.06401 5.10193 5.19985 5.26053 5.33966 5.45072 5.49922 5.51947 5.69407 5.75845 5.85115 6.12446 6.14054 6.39096 6.47149 6.63972 6.72347 6.92855 7.45394 8.95302 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.004420 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.238212 B = 6332.839342 C = 7278.599620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.052 3.948 3 N -0.538 5.538 4 C 0.206 3.794 5 C -0.521 4.521 6 H 0.059 0.941 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.958 3.042 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.106 3.894 14 C 0.123 3.877 15 C -0.224 4.224 16 C -0.093 4.093 17 C -0.079 4.079 18 C -0.097 4.097 19 C -0.029 4.029 20 C 0.290 3.710 21 N -0.468 5.468 22 C -0.059 4.059 23 C 0.079 3.921 24 N -0.568 5.568 25 H 0.428 0.572 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.059 0.941 31 H -0.039 1.039 32 H 0.020 0.980 33 H 0.262 0.738 34 H 0.052 0.948 35 H 0.109 0.891 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.016 4.964 -8.302 13.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.075 4.075 3 N -0.262 5.262 4 C 0.080 3.920 5 C -0.559 4.559 6 H 0.077 0.923 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.022 4.022 14 C 0.012 3.988 15 C -0.250 4.250 16 C -0.099 4.099 17 C -0.097 4.097 18 C -0.119 4.119 19 C -0.034 4.034 20 C -0.024 4.024 21 N -0.144 5.144 22 C -0.082 4.082 23 C -0.029 4.029 24 N -0.171 5.171 25 H 0.268 0.732 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.077 0.923 31 H -0.022 1.022 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.127 0.873 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.170 0.830 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.979 6.709 -7.516 14.901 hybrid contribution 1.052 -1.361 0.392 1.764 sum -9.928 5.348 -7.124 13.338 Atomic orbital electron populations 1.21729 0.93146 1.02111 1.02124 1.22037 0.96763 0.88533 1.00189 1.62100 1.20609 1.17676 1.25860 1.19428 0.83052 0.95355 0.94176 1.21455 0.92803 1.43856 0.97785 0.92304 1.25769 0.95650 0.95694 1.02120 1.70066 0.99016 1.49506 1.38370 0.85551 0.77683 0.78375 0.80029 1.19874 1.21067 1.19274 1.20801 1.03095 0.86832 0.91502 1.20286 0.88224 0.92299 0.98030 1.21627 0.98482 0.91717 1.13155 1.19657 0.93726 0.94064 1.02475 1.20376 1.00330 0.89751 0.99289 1.20696 0.92574 0.98812 0.99778 1.15523 0.94319 0.85347 1.08175 1.25662 0.92232 0.92463 0.92083 1.81255 1.09712 1.12213 1.11192 1.20050 1.00455 0.87604 1.00128 1.18031 0.94044 0.85889 1.04933 1.41553 1.13135 1.03757 1.58692 0.73232 0.92790 0.91608 0.91227 0.95559 0.92268 1.02164 0.96179 0.92891 0.92998 0.87285 0.84687 0.83815 0.83037 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.88 71.98 0.71 -2.52 16 2 C 0.05 1.77 5.53 86.30 0.48 2.24 16 3 N -0.54 -20.45 4.39 -905.35 -3.98 -24.43 16 4 C 0.21 10.26 4.57 85.56 0.39 10.65 16 5 C -0.52 -28.44 8.28 25.60 0.21 -28.23 16 6 H 0.06 3.17 7.26 -2.91 -0.02 3.15 16 7 C 0.01 0.33 5.46 84.66 0.46 0.80 16 8 N -0.93 -54.60 13.29 21.45 0.28 -54.31 16 9 Si 0.96 43.66 29.54 68.60 2.03 45.68 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 13 C 0.11 3.17 5.33 85.55 0.46 3.62 16 14 C 0.12 3.72 6.06 40.94 0.25 3.97 16 15 C -0.22 -7.38 9.76 23.49 0.23 -7.15 16 16 C -0.09 -2.72 6.37 -20.14 -0.13 -2.85 16 17 C -0.08 -1.90 10.03 22.20 0.22 -1.68 16 18 C -0.10 -2.01 9.67 22.29 0.22 -1.79 16 19 C -0.03 -0.62 5.74 -21.28 -0.12 -0.74 16 20 C 0.29 6.77 15.30 88.33 1.35 8.12 16 21 N -0.47 -12.86 18.54 19.00 0.35 -12.51 16 22 C -0.06 -1.26 9.77 22.64 0.22 -1.04 16 23 C 0.08 2.04 7.26 38.96 0.28 2.32 16 24 N -0.57 -14.32 6.07 -175.98 -1.07 -15.39 16 25 H 0.43 8.20 8.96 -92.71 -0.83 7.37 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.29 6.77 -2.39 -0.02 1.27 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.03 0.85 8.05 -2.38 -0.02 0.83 16 30 H 0.06 2.33 6.58 -2.39 -0.02 2.32 16 31 H -0.04 -2.15 8.12 -2.39 -0.02 -2.17 16 32 H 0.02 1.09 6.35 -2.39 -0.02 1.07 16 33 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 34 H 0.05 1.60 8.04 -2.39 -0.02 1.58 16 35 H 0.11 2.47 6.42 -2.38 -0.02 2.46 16 36 H 0.14 4.64 8.06 -2.91 -0.02 4.62 16 37 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 38 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 39 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -66.07 335.53 3.09 -62.98 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.25 Total: 12.24 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 5.23 Total: -14.27 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -4.41 Total: -106.64 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -66.07 3.09 -62.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249429239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.397 kcal (2) G-P(sol) polarization free energy of solvation -66.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds