Wall clock time and date at job start Tue Mar 31 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47119 * 2 1 4 4 H 1.09000 * 109.47099 * 55.41171 * 3 2 1 5 5 C 1.50694 * 109.47048 * 175.41503 * 3 2 1 6 6 H 1.07998 * 120.00334 * 114.55645 * 5 3 2 7 7 C 1.37874 * 119.99861 * 294.55103 * 5 3 2 8 8 N 1.31516 * 120.00243 * 350.60455 * 7 5 3 9 9 Si 1.86802 * 119.99913 * 170.60412 * 7 5 3 10 10 H 1.48499 * 109.47373 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47227 * 119.99924 * 9 7 5 12 12 H 1.48494 * 109.47410 * 239.99681 * 9 7 5 13 13 N 1.46502 * 109.46770 * 295.41172 * 3 2 1 14 14 C 1.35042 * 126.39831 * 300.00054 * 13 3 2 15 15 N 1.30504 * 108.69729 * 180.02562 * 14 13 3 16 16 C 1.34125 * 109.25761 * 359.75723 * 15 14 13 17 17 C 1.50704 * 125.98948 * 180.25372 * 16 15 14 18 18 C 1.34666 * 108.02133 * 0.39596 * 16 15 14 19 19 C 1.50706 * 126.59343 * 179.87792 * 18 16 15 20 20 S 1.81398 * 109.46846 * 269.68781 * 19 18 16 21 21 C 1.81407 * 102.99671 * 179.97438 * 20 19 18 22 22 C 1.52999 * 109.46700 * 180.02562 * 21 20 19 23 23 N 1.46909 * 109.46642 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47260 * 305.12532 * 1 2 3 25 25 H 1.09003 * 109.47419 * 65.12889 * 1 2 3 26 26 H 1.08997 * 109.47205 * 185.12452 * 1 2 3 27 27 H 1.09003 * 109.46991 * 239.99729 * 2 1 3 28 28 H 1.08997 * 109.47174 * 119.99618 * 2 1 3 29 29 H 0.97002 * 119.99985 * 180.02562 * 8 7 5 30 30 H 1.07992 * 125.65216 * 0.02562 * 14 13 3 31 31 H 1.09006 * 109.46757 * 270.17107 * 17 16 15 32 32 H 1.08998 * 109.47256 * 30.16926 * 17 16 15 33 33 H 1.09000 * 109.47214 * 150.17502 * 17 16 15 34 34 H 1.08996 * 109.47187 * 149.68481 * 19 18 16 35 35 H 1.08998 * 109.46983 * 29.68698 * 19 18 16 36 36 H 1.09001 * 109.47106 * 299.99766 * 21 20 19 37 37 H 1.08993 * 109.47342 * 59.99726 * 21 20 19 38 38 H 1.08996 * 109.47414 * 299.99352 * 22 21 20 39 39 H 1.08997 * 109.47320 * 60.00500 * 22 21 20 40 40 H 1.00900 * 110.99531 * 56.04948 * 23 22 21 41 41 H 1.00903 * 110.99446 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6111 1.9795 0.8460 5 6 3.5426 1.4440 0.1136 6 1 4.1457 1.8104 -0.7040 7 6 4.1477 0.9777 1.2614 8 7 3.4215 0.7057 2.3236 9 14 5.9989 0.7322 1.3077 10 1 6.5812 1.1083 -0.0056 11 1 6.5851 1.5867 2.3715 12 1 6.3023 -0.6928 1.5944 13 7 1.6439 2.1004 -1.2476 14 6 1.9848 1.7197 -2.4976 15 7 1.4456 2.5487 -3.3492 16 6 0.7440 3.4757 -2.6804 17 6 -0.0345 4.6107 -3.2943 18 6 0.8596 3.2163 -1.3640 19 6 0.2395 4.0000 -0.2360 20 16 1.3844 5.3024 0.2964 21 6 0.4757 6.1222 1.6354 22 6 1.3212 7.2654 2.2001 23 7 0.5851 7.9297 3.2841 24 1 -0.3634 0.5913 0.8405 25 1 -0.3634 0.4322 -0.9324 26 1 -0.3633 -1.0235 0.0918 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8472 0.3780 3.1312 30 1 2.6014 0.8700 -2.7506 31 1 0.6133 5.4812 -3.3981 32 1 -0.4005 4.3110 -4.2762 33 1 -0.8792 4.8609 -2.6524 34 1 0.0344 3.3322 0.6007 35 1 -0.6920 4.4521 -0.5768 36 1 -0.4615 6.5212 1.2474 37 1 0.2643 5.4016 2.4254 38 1 2.2586 6.8669 2.5881 39 1 1.5321 7.9860 1.4099 40 1 0.3210 7.2690 3.9996 41 1 1.1231 8.6890 3.6742 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:56 Heat of formation + Delta-G solvation = 35.121716 kcal Electronic energy + Delta-G solvation = -20651.568781 eV Core-core repulsion = 17692.751523 eV Total energy + Delta-G solvation = -2958.817258 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.37933 -35.52957 -35.37747 -32.36211 -32.14298 -31.18463 -29.10625 -28.39606 -26.88680 -24.85475 -23.43035 -22.29969 -21.52615 -19.19114 -18.92679 -16.75582 -16.46552 -15.90017 -15.64273 -15.23951 -14.69325 -14.48616 -14.25264 -14.13287 -13.39747 -13.15408 -13.12685 -12.68540 -12.42907 -12.26451 -12.08609 -11.95940 -11.81014 -11.67330 -11.57439 -11.42208 -11.06097 -10.88034 -10.39415 -10.30805 -10.09412 -9.75858 -9.58672 -9.19876 -8.90349 -8.63205 -8.41019 -7.43571 -7.26090 -6.34145 -4.39019 1.67094 2.77720 3.15402 3.21920 3.25056 3.31146 3.83220 3.88224 4.25623 4.55412 4.87777 4.99214 5.01343 5.15621 5.27058 5.33920 5.51250 5.67682 5.74523 5.81620 5.88245 5.88510 5.92438 5.95462 6.12837 6.14998 6.33290 6.48817 6.58905 6.62027 6.74673 6.88274 6.95979 7.21549 7.26519 7.41812 7.55238 7.66797 7.90180 8.15297 8.66342 8.87312 9.27459 10.73544 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.010885 B = 0.007082 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.674383 B = 3952.571236 C = 5454.141804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.257 3.743 4 H 0.064 0.936 5 C -0.531 4.531 6 H 0.066 0.934 7 C 0.074 3.926 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.406 5.406 14 C 0.198 3.802 15 N -0.514 5.514 16 C 0.004 3.996 17 C -0.058 4.058 18 C -0.023 4.023 19 C 0.005 3.995 20 S -0.229 6.229 21 C -0.097 4.097 22 C 0.078 3.922 23 N -0.849 5.849 24 H 0.045 0.955 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.266 0.734 30 H 0.195 0.805 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.080 0.920 40 H 0.341 0.659 41 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 6.915 0.120 9.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C 0.157 3.843 4 H 0.081 0.919 5 C -0.569 4.569 6 H 0.084 0.916 7 C -0.130 4.130 8 N -0.520 5.520 9 Si 0.726 3.274 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.084 5.084 14 C -0.086 4.086 15 N -0.234 5.234 16 C -0.131 4.131 17 C -0.116 4.116 18 C -0.143 4.143 19 C -0.144 4.144 20 S -0.002 6.002 21 C -0.246 4.246 22 C -0.053 4.053 23 N -0.380 5.380 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.212 0.788 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.153 0.847 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.055 7.139 -1.264 9.446 hybrid contribution 0.635 -0.935 2.266 2.532 sum -5.421 6.204 1.002 8.299 Atomic orbital electron populations 1.21821 0.98223 1.00144 1.00439 1.21886 0.92846 0.98623 1.02768 1.19412 0.96302 0.89538 0.79002 0.91863 1.21192 0.89385 1.43880 1.02460 0.91554 1.24844 0.98865 0.94645 0.94688 1.69943 1.35989 1.43809 1.02233 0.86402 0.84541 0.77953 0.78465 1.19433 1.20823 1.20629 1.45952 1.33248 1.19526 1.09632 1.24506 1.02749 1.01454 0.79843 1.70134 1.14067 1.05836 1.33354 1.20295 1.03971 0.99515 0.89284 1.19912 0.97650 0.94253 0.99787 1.19804 1.05309 0.94458 0.94691 1.21439 0.98005 0.96745 0.98207 1.87348 1.30225 1.38965 1.43655 1.23326 1.01725 0.99753 0.99814 1.21408 0.94300 0.94977 0.94622 1.58759 1.48486 1.15238 1.15496 0.93590 0.94039 0.93923 0.93412 0.88949 0.92430 0.78785 0.91832 0.91946 0.92313 0.89704 0.88976 0.89752 0.90510 0.94280 0.90175 0.84690 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.73 37.16 0.36 -2.37 16 2 C -0.12 -2.59 5.28 -26.73 -0.14 -2.73 16 3 C 0.26 5.90 2.19 -69.08 -0.15 5.75 16 4 H 0.06 1.59 6.77 -51.93 -0.35 1.24 16 5 C -0.53 -13.54 8.46 -34.44 -0.29 -13.83 16 6 H 0.07 1.76 7.69 -52.49 -0.40 1.36 16 7 C 0.07 1.88 5.16 -17.82 -0.09 1.79 16 8 N -0.88 -23.08 12.16 55.43 0.67 -22.41 16 9 Si 0.90 20.26 29.55 -169.99 -5.02 15.24 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.41 -8.64 2.14 -108.15 -0.23 -8.87 16 14 C 0.20 4.13 11.49 -90.37 -1.04 3.09 16 15 N -0.51 -10.77 11.25 -10.88 -0.12 -10.89 16 16 C 0.00 0.08 7.09 -82.85 -0.59 -0.51 16 17 C -0.06 -0.88 10.22 36.01 0.37 -0.51 16 18 C -0.02 -0.46 6.21 -81.60 -0.51 -0.97 16 19 C 0.00 0.08 5.86 36.01 0.21 0.29 16 20 S -0.23 -3.95 21.72 -107.50 -2.33 -6.28 16 21 C -0.10 -1.30 6.20 37.16 0.23 -1.07 16 22 C 0.08 0.95 6.79 -3.82 -0.03 0.92 16 23 N -0.85 -8.52 9.62 -10.37 -0.10 -8.62 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.76 7.89 -51.93 -0.41 0.35 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.98 7.81 -51.93 -0.41 0.57 16 28 H 0.09 2.15 6.80 -51.93 -0.35 1.80 16 29 H 0.27 6.64 8.31 -40.82 -0.34 6.31 16 30 H 0.20 3.66 8.06 -52.49 -0.42 3.24 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.77 7.16 -51.93 -0.37 0.39 16 34 H 0.08 1.49 7.22 -51.93 -0.37 1.11 16 35 H 0.09 1.31 7.17 -51.92 -0.37 0.94 16 36 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.34 3.10 8.99 -39.29 -0.35 2.75 16 41 H 0.34 2.80 9.08 -39.29 -0.36 2.44 16 LS Contribution 350.53 15.07 5.28 5.28 Total: -1.00 -28.00 350.53 -10.21 -38.21 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.69 Total: 8.48 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -1.66 Total: -10.15 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.22 Total: -50.78 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: -3.95 SS G_CDS: -2.33 Total: -6.28 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.00 -10.21 -38.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.330 kcal (2) G-P(sol) polarization free energy of solvation -27.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds