Wall clock time and date at job start Tue Mar 31 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47120 * 2 1 4 4 H 1.08999 * 109.47073 * 54.55095 * 3 2 1 5 5 C 1.50700 * 109.46832 * 174.54528 * 3 2 1 6 6 H 1.08000 * 120.00064 * 120.00023 * 5 3 2 7 7 C 1.37878 * 120.00158 * 300.00562 * 5 3 2 8 8 N 1.31517 * 120.00194 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99872 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47237 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47380 * 119.99736 * 9 7 5 12 12 H 1.48505 * 109.47236 * 239.99610 * 9 7 5 13 13 N 1.46892 * 109.47481 * 294.54879 * 3 2 1 14 14 C 1.46895 * 111.00175 * 104.65708 * 13 3 2 15 15 H 1.09003 * 109.47305 * 343.97815 * 14 13 3 16 16 C 1.52999 * 109.46925 * 103.98206 * 14 13 3 17 17 C 1.53002 * 109.47000 * 294.36415 * 16 14 13 18 18 C 1.50706 * 109.47229 * 223.97766 * 14 13 3 19 19 C 1.38205 * 120.00017 * 340.00151 * 18 14 13 20 20 C 1.38422 * 120.00130 * 179.97438 * 19 18 14 21 21 F 1.35105 * 120.00494 * 179.97438 * 20 19 18 22 22 C 1.38475 * 120.00167 * 0.02562 * 20 19 18 23 23 C 1.38162 * 119.99681 * 359.95374 * 22 20 19 24 24 C 1.38421 * 119.99845 * 159.72095 * 18 14 13 25 25 F 1.35103 * 120.00431 * 0.03253 * 24 18 14 26 26 H 1.08995 * 109.47362 * 58.90287 * 1 2 3 27 27 H 1.08994 * 109.47888 * 178.91105 * 1 2 3 28 28 H 1.09009 * 109.47170 * 298.90985 * 1 2 3 29 29 H 1.09001 * 109.46921 * 120.00762 * 2 1 3 30 30 H 1.09001 * 109.46498 * 240.00198 * 2 1 3 31 31 H 0.96996 * 120.00027 * 180.02562 * 8 7 5 32 32 H 1.00903 * 111.00029 * 228.61842 * 13 3 2 33 33 H 1.08996 * 109.47423 * 54.36544 * 16 14 13 34 34 H 1.09005 * 109.46937 * 174.36767 * 16 14 13 35 35 H 1.08997 * 109.47141 * 184.65853 * 17 16 14 36 36 H 1.09004 * 109.47084 * 304.66191 * 17 16 14 37 37 H 1.08994 * 109.46864 * 64.65764 * 17 16 14 38 38 H 1.08007 * 119.99937 * 0.02562 * 19 18 14 39 39 H 1.07998 * 120.00163 * 179.97438 * 22 20 19 40 40 H 1.08000 * 120.00300 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5992 1.9837 0.8372 5 6 3.5409 1.4445 0.1351 6 1 4.1521 1.8870 -0.6377 7 6 4.1340 0.8814 1.2451 8 7 3.3899 0.3429 2.1863 9 14 5.9946 0.8834 1.4121 10 1 6.5973 1.5445 0.2268 11 1 6.3805 1.6222 2.6410 12 1 6.4851 -0.5155 1.5009 13 7 1.6608 2.0960 -1.2597 14 6 0.5414 3.0249 -1.0547 15 1 0.0651 2.8143 -0.0972 16 6 1.0646 4.4627 -1.0589 17 6 1.9770 4.6768 0.1505 18 6 -0.4637 2.8530 -2.1644 19 6 -0.0856 2.2584 -3.3533 20 6 -1.0090 2.0999 -4.3723 21 9 -0.6392 1.5192 -5.5348 22 6 -2.3114 2.5377 -4.2007 23 6 -2.6896 3.1317 -3.0120 24 6 -1.7672 3.2853 -1.9906 25 9 -2.1381 3.8620 -0.8265 26 1 -0.3634 0.5307 -0.8799 27 1 -0.3635 -1.0274 -0.0195 28 1 -0.3634 0.4968 0.8997 29 1 1.8933 -0.5140 0.8899 30 1 1.8932 -0.5138 -0.8900 31 1 3.8072 -0.0529 2.9674 32 1 2.4506 2.5673 -1.6746 33 1 1.6274 4.6419 -1.9749 34 1 0.2244 5.1552 -1.0073 35 1 2.2835 5.7219 0.1939 36 1 1.4387 4.4178 1.0622 37 1 2.8589 4.0432 0.0569 38 1 0.9302 1.9165 -3.4870 39 1 -3.0317 2.4145 -4.9959 40 1 -3.7055 3.4728 -2.8779 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:04 Heat of formation + Delta-G solvation = -92.997807 kcal Electronic energy + Delta-G solvation = -23158.935629 eV Core-core repulsion = 19608.429554 eV Total energy + Delta-G solvation = -3550.506075 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.87177 -49.83772 -40.30720 -38.38666 -35.67271 -33.55791 -32.27859 -31.40054 -30.88143 -28.59120 -26.39645 -24.63164 -23.76437 -23.28626 -21.61747 -21.27067 -18.84307 -18.39848 -18.04986 -17.98824 -16.88551 -16.76089 -16.27804 -15.98551 -15.62815 -15.43440 -15.28657 -14.95327 -14.80303 -14.36861 -14.11680 -13.92435 -13.70018 -13.41763 -13.25606 -13.09950 -12.83928 -12.74119 -12.67007 -12.53461 -12.23218 -12.05372 -11.84972 -11.75305 -11.49985 -11.25726 -10.79821 -10.47604 -9.94221 -9.44434 -9.02271 -8.07782 -6.21476 0.01878 0.18685 1.40515 1.44249 1.53456 2.42804 2.46374 3.18634 3.24924 3.27165 3.47113 3.69401 3.96037 4.04021 4.13337 4.23501 4.32411 4.50936 4.61281 4.65261 4.73695 4.84939 4.87695 4.92013 5.03285 5.04671 5.12169 5.15153 5.18068 5.23691 5.31569 5.37322 5.48144 5.56683 5.68238 5.75164 5.90343 5.98636 6.30396 6.48678 6.81376 7.08448 7.48264 8.95776 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.005165 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.352377 B = 5419.643983 C = 5723.560977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 C 0.233 3.767 4 H -0.015 1.015 5 C -0.532 4.532 6 H 0.059 0.941 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.951 3.049 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.673 5.673 14 C 0.128 3.872 15 H 0.059 0.941 16 C -0.127 4.127 17 C -0.149 4.149 18 C -0.076 4.076 19 C -0.105 4.105 20 C 0.074 3.926 21 F -0.144 7.144 22 C -0.123 4.123 23 C -0.118 4.118 24 C 0.070 3.930 25 F -0.144 7.144 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.027 0.973 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.260 0.740 32 H 0.338 0.662 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.052 0.948 38 H 0.144 0.856 39 H 0.173 0.827 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.797 7.025 -10.848 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.141 4.141 3 C 0.125 3.875 4 H 0.003 0.997 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.181 4.181 8 N -0.554 5.554 9 Si 0.777 3.223 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.303 5.303 14 C 0.017 3.983 15 H 0.077 0.923 16 C -0.166 4.166 17 C -0.207 4.207 18 C -0.078 4.078 19 C -0.124 4.124 20 C 0.055 3.945 21 F -0.123 7.123 22 C -0.142 4.142 23 C -0.136 4.136 24 C 0.050 3.950 25 F -0.123 7.123 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.156 0.844 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.162 0.838 39 H 0.190 0.810 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.165 6.410 -10.873 16.852 hybrid contribution 1.618 0.334 1.157 2.017 sum -9.547 6.744 -9.716 15.200 Atomic orbital electron populations 1.21648 0.97395 0.99800 0.99852 1.21412 0.93471 0.99385 0.99832 1.18903 0.92899 0.90889 0.84843 0.99706 1.21778 0.92758 1.37574 1.04923 0.92240 1.25607 1.01820 0.95013 0.95670 1.70027 1.36218 1.39339 1.09808 0.85619 0.81242 0.77480 0.77929 1.18998 1.21100 1.21139 1.60622 1.09991 1.31907 1.27779 1.20413 0.91566 0.91998 0.94325 0.92328 1.22006 0.99740 0.95575 0.99236 1.21757 0.99926 1.01790 0.97191 1.19875 0.93124 0.98587 0.96185 1.20925 1.01205 0.99002 0.91296 1.17900 0.94563 0.99474 0.82603 1.91486 1.92294 1.82237 1.46240 1.21212 0.94501 0.99259 0.99196 1.21182 1.00694 1.00428 0.91336 1.17826 0.93437 1.00320 0.83414 1.91471 1.91882 1.82230 1.46727 0.92794 0.93860 0.95429 0.92309 0.95279 0.93114 0.84351 0.90566 0.91128 0.91278 0.94668 0.92877 0.83778 0.80979 0.81010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.37 9.31 71.98 0.67 -4.70 16 2 C -0.10 -4.92 5.45 30.59 0.17 -4.76 16 3 C 0.23 11.09 1.29 44.17 0.06 11.15 16 4 H -0.01 -0.79 6.84 -2.39 -0.02 -0.81 16 5 C -0.53 -27.47 7.79 25.60 0.20 -27.27 16 6 H 0.06 3.00 7.38 -2.91 -0.02 2.98 16 7 C 0.02 0.98 5.29 84.65 0.45 1.43 16 8 N -0.91 -51.63 11.29 21.45 0.24 -51.39 16 9 Si 0.95 42.60 29.54 68.60 2.03 44.63 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 13 N -0.67 -26.12 4.22 -477.18 -2.01 -28.13 16 14 C 0.13 4.38 1.16 44.17 0.05 4.43 16 15 H 0.06 2.33 6.68 -2.39 -0.02 2.31 16 16 C -0.13 -3.82 5.21 30.59 0.16 -3.66 16 17 C -0.15 -4.98 9.11 71.98 0.66 -4.32 16 18 C -0.08 -2.27 4.22 -19.83 -0.08 -2.35 16 19 C -0.11 -3.02 9.31 22.31 0.21 -2.82 16 20 C 0.07 1.84 7.30 22.37 0.16 2.00 16 21 F -0.14 -3.73 17.27 44.97 0.78 -2.96 16 22 C -0.12 -2.36 10.02 22.31 0.22 -2.14 16 23 C -0.12 -2.34 10.02 22.31 0.22 -2.11 16 24 C 0.07 1.86 7.24 22.37 0.16 2.03 16 25 F -0.14 -4.18 16.65 44.97 0.75 -3.43 16 26 H 0.05 2.11 6.24 -2.39 -0.01 2.10 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.06 3.21 5.94 -2.39 -0.01 3.19 16 30 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.34 12.88 7.00 -89.69 -0.63 12.25 16 33 H 0.08 2.10 8.03 -2.39 -0.02 2.08 16 34 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.05 2.04 6.39 -2.39 -0.02 2.03 16 38 H 0.14 4.43 7.14 -2.91 -0.02 4.41 16 39 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -57.26 327.93 5.51 -51.76 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.42 Total: 22.60 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 3.30 Total: -33.08 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -1.77 Total: -79.52 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 1.53 Total: -6.39 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -57.26 5.51 -51.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.242 kcal (2) G-P(sol) polarization free energy of solvation -57.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds