Wall clock time and date at job start Tue Mar 31 2020 05:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47305 * 2 1 4 4 H 1.08996 * 109.47353 * 303.29996 * 3 2 1 5 5 C 1.50697 * 109.47720 * 183.28856 * 3 2 1 6 6 H 1.07993 * 120.00321 * 240.00660 * 5 3 2 7 7 C 1.37880 * 119.99587 * 60.00139 * 5 3 2 8 8 N 1.31517 * 120.00133 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00118 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46921 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46802 * 119.99935 * 9 7 5 12 12 H 1.48495 * 109.47374 * 240.00441 * 9 7 5 13 13 N 1.46910 * 109.46709 * 63.29263 * 3 2 1 14 14 C 1.46904 * 110.99746 * 250.54061 * 13 3 2 15 15 H 1.09000 * 109.47283 * 42.97090 * 14 13 3 16 16 C 1.53005 * 109.46716 * 162.97103 * 14 13 3 17 17 C 1.52994 * 109.47119 * 294.54930 * 16 14 13 18 18 C 1.50699 * 109.46993 * 282.97013 * 14 13 3 19 19 C 1.38197 * 120.00155 * 332.87856 * 18 14 13 20 20 C 1.38427 * 120.00075 * 179.97438 * 19 18 14 21 21 F 1.35101 * 120.00212 * 179.97438 * 20 19 18 22 22 C 1.38469 * 120.00037 * 359.97438 * 20 19 18 23 23 C 1.38163 * 119.99645 * 359.96446 * 22 20 19 24 24 C 1.38435 * 119.99576 * 152.60264 * 18 14 13 25 25 F 1.35096 * 120.00056 * 0.02562 * 24 18 14 26 26 H 1.08999 * 109.46959 * 294.01057 * 1 2 3 27 27 H 1.09001 * 109.46943 * 54.00822 * 1 2 3 28 28 H 1.09002 * 109.46808 * 174.01096 * 1 2 3 29 29 H 1.09003 * 109.47442 * 240.00160 * 2 1 3 30 30 H 1.08995 * 109.47288 * 120.00393 * 2 1 3 31 31 H 0.97000 * 120.00072 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99519 * 126.58931 * 13 3 2 33 33 H 1.08995 * 109.46772 * 174.54919 * 16 14 13 34 34 H 1.08994 * 109.46814 * 54.55159 * 16 14 13 35 35 H 1.09000 * 109.47352 * 175.36403 * 17 16 14 36 36 H 1.09008 * 109.47538 * 55.36676 * 17 16 14 37 37 H 1.09001 * 109.47203 * 295.36855 * 17 16 14 38 38 H 1.08001 * 120.00352 * 359.97438 * 19 18 14 39 39 H 1.08001 * 120.00379 * 179.97438 * 22 20 19 40 40 H 1.08005 * 119.99684 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6293 1.9731 -0.8589 5 6 3.5448 1.4434 -0.0815 6 1 4.1280 1.8956 0.7069 7 6 4.1769 0.8666 -1.1627 8 7 3.4666 0.3162 -2.1230 9 14 6.0421 0.8683 -1.2642 10 1 6.6024 1.5452 -0.0670 11 1 6.5361 -0.5312 -1.3176 12 1 6.4707 1.5916 -2.4882 13 7 1.6163 2.1116 1.2373 14 6 0.5835 3.1198 0.9635 15 1 -0.1399 2.7158 0.2553 16 6 -0.1288 3.4870 2.2668 17 6 -0.8938 2.2699 2.7904 18 6 1.2260 4.3508 0.3780 19 6 2.5416 4.6516 0.6755 20 6 3.1319 5.7821 0.1372 21 9 4.4179 6.0765 0.4285 22 6 2.4044 6.6113 -0.6997 23 6 1.0894 6.3099 -0.9981 24 6 0.5000 5.1772 -0.4624 25 9 -0.7846 4.8804 -0.7572 26 1 -0.3633 0.4182 0.9387 27 1 -0.3633 0.6039 -0.8315 28 1 -0.3633 -1.0221 -0.1072 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.9113 -0.0892 -2.8837 32 1 2.4049 2.5221 1.7146 33 1 -0.8273 4.3031 2.0816 34 1 0.6071 3.7998 3.0074 35 1 -1.3333 2.5062 3.7594 36 1 -0.2089 1.4287 2.8975 37 1 -1.6842 2.0075 2.0872 38 1 3.1093 4.0047 1.3279 39 1 2.8647 7.4936 -1.1193 40 1 0.5221 6.9564 -1.6512 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:07 Heat of formation + Delta-G solvation = -79.181963 kcal Electronic energy + Delta-G solvation = -23439.425767 eV Core-core repulsion = 19889.518792 eV Total energy + Delta-G solvation = -3549.906975 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.68017 -48.65481 -39.17731 -36.67425 -34.05847 -31.66337 -31.27519 -29.80262 -29.68146 -26.71589 -24.95970 -23.03728 -22.50341 -22.04873 -20.14130 -19.40417 -17.73309 -17.02589 -16.84210 -16.42803 -15.60328 -15.07712 -14.96878 -14.41501 -14.33662 -14.16144 -13.97154 -13.71645 -13.36552 -13.03398 -12.66750 -12.42246 -12.07797 -11.98562 -11.84209 -11.41584 -11.23694 -11.19024 -10.95286 -10.84259 -10.75143 -10.61919 -10.43424 -10.13960 -9.68332 -9.44398 -8.87929 -8.80763 -8.46527 -8.25320 -7.41910 -6.05234 -4.13519 1.19387 1.28086 3.25933 3.34599 3.37704 3.59836 4.36471 4.39440 4.41722 4.74677 4.86080 5.11603 5.18311 5.27222 5.37288 5.51439 5.54934 5.78978 5.93795 6.01689 6.12585 6.22181 6.23640 6.26918 6.31014 6.36287 6.39553 6.46098 6.62424 6.64614 6.79527 7.01636 7.07232 7.15107 7.45773 7.52592 7.73317 7.93301 8.17438 8.31472 8.58477 8.96882 9.52811 10.99003 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.011926 B = 0.008460 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.329266 B = 3308.842420 C = 4720.567455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 C 0.217 3.783 4 H 0.014 0.986 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.674 5.674 14 C 0.126 3.874 15 H 0.090 0.910 16 C -0.105 4.105 17 C -0.142 4.142 18 C -0.100 4.100 19 C -0.104 4.104 20 C 0.092 3.908 21 F -0.138 7.138 22 C -0.138 4.138 23 C -0.130 4.130 24 C 0.088 3.912 25 F -0.137 7.137 26 H 0.049 0.951 27 H 0.033 0.967 28 H 0.026 0.974 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.260 0.740 32 H 0.331 0.669 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.909 9.733 4.881 12.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C 0.110 3.890 4 H 0.032 0.968 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.305 5.305 14 C 0.015 3.985 15 H 0.108 0.892 16 C -0.143 4.143 17 C -0.199 4.199 18 C -0.103 4.103 19 C -0.123 4.123 20 C 0.073 3.927 21 F -0.117 7.117 22 C -0.156 4.156 23 C -0.149 4.149 24 C 0.068 3.932 25 F -0.115 7.115 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.106 0.894 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.151 0.849 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.166 0.834 39 H 0.157 0.843 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.330 9.106 4.884 12.118 hybrid contribution 1.688 0.698 -0.836 2.009 sum -4.642 9.804 4.048 11.578 Atomic orbital electron populations 1.21842 0.99540 0.98639 1.00180 1.21515 0.91574 0.99377 1.01785 1.19159 0.93750 0.91050 0.85035 0.96799 1.21479 0.91346 1.37841 1.05944 0.92537 1.24881 0.98030 0.95023 0.95586 1.69893 1.34857 1.37746 1.09651 0.86595 0.85998 0.77753 0.78042 1.19723 1.20955 1.21111 1.60981 1.14595 1.27974 1.26922 1.20761 0.95205 0.86666 0.95894 0.89170 1.21469 0.98615 0.97959 0.96230 1.21682 1.00026 0.99021 0.99198 1.20911 0.94157 0.98208 0.97029 1.20913 0.94596 0.95668 1.01100 1.17625 0.79394 0.96245 0.99468 1.91496 1.35035 1.93108 1.92058 1.20843 0.94191 1.00847 0.99766 1.20855 0.95298 0.97052 1.01712 1.17529 0.79762 0.96188 0.99709 1.91472 1.34931 1.93113 1.91995 0.93178 0.94768 0.95475 0.89432 0.94534 0.92950 0.84870 0.92730 0.92161 0.93913 0.90624 0.93385 0.83442 0.84349 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.89 37.16 0.33 -2.57 16 2 C -0.10 -2.43 5.44 -26.73 -0.15 -2.58 16 3 C 0.22 5.12 1.79 -68.86 -0.12 4.99 16 4 H 0.01 0.38 7.27 -51.93 -0.38 0.00 16 5 C -0.53 -13.62 8.61 -34.44 -0.30 -13.92 16 6 H 0.06 1.44 7.35 -52.49 -0.39 1.05 16 7 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 8 N -0.88 -24.65 11.30 55.43 0.63 -24.02 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.67 -13.04 4.93 -102.16 -0.50 -13.54 16 14 C 0.13 2.17 1.48 -68.86 -0.10 2.07 16 15 H 0.09 1.70 6.75 -51.93 -0.35 1.35 16 16 C -0.10 -1.50 5.59 -26.73 -0.15 -1.65 16 17 C -0.14 -1.94 9.06 37.15 0.34 -1.61 16 18 C -0.10 -1.71 4.51 -104.56 -0.47 -2.18 16 19 C -0.10 -1.78 9.15 -39.53 -0.36 -2.14 16 20 C 0.09 1.49 7.30 -39.43 -0.29 1.21 16 21 F -0.14 -2.31 17.27 2.25 0.04 -2.27 16 22 C -0.14 -1.91 10.02 -39.52 -0.40 -2.30 16 23 C -0.13 -1.80 10.02 -39.53 -0.40 -2.19 16 24 C 0.09 1.42 7.24 -39.43 -0.29 1.13 16 25 F -0.14 -2.21 16.52 2.25 0.04 -2.18 16 26 H 0.05 0.93 6.31 -51.93 -0.33 0.60 16 27 H 0.03 0.69 8.11 -51.93 -0.42 0.27 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 2.31 5.99 -51.93 -0.31 2.00 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.33 6.33 5.38 -39.29 -0.21 6.12 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 1.15 7.15 -51.92 -0.37 0.78 16 37 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.15 2.57 6.03 -52.49 -0.32 2.26 16 39 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -27.06 328.85 -7.90 -34.95 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.59 Total: 6.11 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -2.44 Total: -20.02 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.12 Total: -37.56 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.08 Total: -4.45 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.06 -7.90 -34.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.229 kcal (2) G-P(sol) polarization free energy of solvation -27.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds