Wall clock time and date at job start Tue Mar 31 2020 05:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47314 * 2 1 4 4 H 1.09007 * 109.47309 * 54.99613 * 3 2 1 5 5 C 1.50693 * 109.47428 * 174.99601 * 3 2 1 6 6 H 1.08008 * 120.00190 * 119.99766 * 5 3 2 7 7 C 1.37878 * 120.00265 * 300.00126 * 5 3 2 8 8 N 1.31515 * 119.99772 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00224 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46955 * 90.00078 * 9 7 5 11 11 H 1.48502 * 109.47212 * 209.99902 * 9 7 5 12 12 H 1.48499 * 109.47004 * 330.00289 * 9 7 5 13 13 N 1.46504 * 109.47048 * 295.00013 * 3 2 1 14 14 C 1.30101 * 119.99909 * 129.74482 * 13 3 2 15 15 N 1.37778 * 119.99728 * 193.96883 * 14 13 3 16 16 C 1.48311 * 120.00245 * 13.97184 * 14 13 3 17 17 C 1.40293 * 119.24191 * 197.20611 * 16 14 13 18 18 C 1.36441 * 119.82640 * 179.69253 * 17 16 14 19 19 C 1.40811 * 118.25971 * 0.58052 * 18 17 16 20 20 C 1.40405 * 121.27430 * 179.66451 * 19 18 17 21 21 C 1.36150 * 119.65006 * 179.97438 * 20 19 18 22 22 C 1.39403 * 120.89912 * 0.04531 * 21 20 19 23 23 C 1.36032 * 121.06917 * 359.97220 * 22 21 20 24 24 C 1.40754 * 119.74249 * 0.02562 * 23 22 21 25 25 N 1.31865 * 119.24630 * 17.46958 * 16 14 13 26 26 H 1.08996 * 109.46947 * 300.00439 * 1 2 3 27 27 H 1.09000 * 109.47079 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46587 * 60.00022 * 1 2 3 29 29 H 1.09001 * 109.46587 * 119.99978 * 2 1 3 30 30 H 1.08999 * 109.47202 * 240.00014 * 2 1 3 31 31 H 0.97002 * 120.00109 * 179.97438 * 8 7 5 32 32 H 0.97006 * 119.99835 * 359.97438 * 15 14 13 33 33 H 0.96998 * 120.00424 * 180.02562 * 15 14 13 34 34 H 1.08001 * 120.08827 * 359.96909 * 17 16 14 35 35 H 1.08007 * 120.86838 * 180.26364 * 18 17 16 36 36 H 1.07998 * 120.17655 * 359.97438 * 20 19 18 37 37 H 1.07997 * 119.55354 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.46305 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.12588 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4062 0.3375 2.1734 9 14 6.0050 0.8801 1.3813 10 1 6.4428 2.1130 2.0839 11 1 6.4391 -0.3110 2.1548 12 1 6.6132 0.8396 0.0272 13 7 1.6525 2.0974 -1.2518 14 6 1.0623 3.2565 -1.2239 15 7 0.4430 3.7416 -2.3550 16 6 1.0562 4.0557 0.0254 17 6 0.1345 5.1044 0.1636 18 6 0.1142 5.8433 1.3105 19 6 1.0412 5.5287 2.3227 20 6 1.0807 6.2523 3.5253 21 6 1.9904 5.9195 4.4820 22 6 2.8856 4.8693 4.2842 23 6 2.8765 4.1467 3.1317 24 6 1.9510 4.4599 2.1185 25 7 1.9205 3.7677 0.9787 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.8292 -0.0610 2.9501 32 1 0.4474 3.2190 -3.1723 33 1 0.0032 4.6059 -2.3344 34 1 -0.5600 5.3234 -0.6339 35 1 -0.5909 6.6516 1.4365 36 1 0.3931 7.0686 3.6906 37 1 2.0192 6.4768 5.4066 38 1 3.5978 4.6254 5.0586 39 1 3.5766 3.3359 2.9948 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:23 Heat of formation + Delta-G solvation = 93.434358 kcal Electronic energy + Delta-G solvation = -22371.231243 eV Core-core repulsion = 19279.498660 eV Total energy + Delta-G solvation = -3091.732583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.48953 -37.65522 -35.62822 -34.31649 -33.08439 -31.59605 -30.39344 -29.95684 -29.30315 -26.51329 -24.40600 -23.20542 -22.79868 -21.73262 -20.37998 -19.02258 -17.67389 -16.89773 -16.78526 -16.04337 -15.33979 -14.93794 -14.41743 -14.19140 -14.15567 -13.77752 -13.48369 -13.07623 -12.91304 -12.76257 -12.27184 -12.08177 -11.55859 -11.25864 -11.19404 -11.05069 -11.00952 -10.71420 -10.60309 -10.24120 -10.02511 -9.72350 -9.51729 -9.08501 -8.99008 -8.43339 -8.31289 -7.94594 -7.39045 -7.10359 -5.79240 -3.78686 0.73370 1.06151 2.37166 2.98830 3.37807 3.44386 3.50038 3.84238 4.07514 4.56061 4.61710 4.75292 4.89312 5.06290 5.10645 5.15715 5.39470 5.49273 5.50054 5.55688 5.79348 6.13804 6.19589 6.28134 6.35770 6.41320 6.45538 6.61892 6.65980 6.69957 6.77792 6.92912 7.10936 7.17848 7.43441 7.59324 7.79873 7.94339 8.11212 8.19528 8.36415 8.53229 8.64167 9.13228 9.45370 9.81077 11.25736 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.012013 B = 0.008793 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.272342 B = 3183.756444 C = 4716.189888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C 0.216 3.784 4 H 0.054 0.946 5 C -0.462 4.462 6 H 0.050 0.950 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.882 3.118 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.536 5.536 14 C 0.388 3.612 15 N -0.860 5.860 16 C 0.140 3.860 17 C -0.156 4.156 18 C -0.078 4.078 19 C -0.101 4.101 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.058 4.058 24 C 0.125 3.875 25 N -0.376 5.376 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.038 0.962 29 H 0.097 0.903 30 H 0.035 0.965 31 H 0.256 0.744 32 H 0.401 0.599 33 H 0.391 0.609 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.734 12.172 1.082 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C 0.108 3.892 4 H 0.070 0.930 5 C -0.501 4.501 6 H 0.068 0.932 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.202 1.202 13 N -0.259 5.259 14 C 0.106 3.894 15 N -0.414 5.414 16 C -0.016 4.016 17 C -0.178 4.178 18 C -0.104 4.104 19 C -0.104 4.104 20 C -0.132 4.132 21 C -0.130 4.130 22 C -0.144 4.144 23 C -0.076 4.076 24 C 0.003 3.997 25 N -0.086 5.086 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.115 0.885 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.231 0.769 33 H 0.219 0.781 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.644 10.605 0.821 12.541 hybrid contribution 0.203 1.281 0.681 1.465 sum -6.441 11.886 1.502 13.602 Atomic orbital electron populations 1.21785 0.99796 0.98799 0.99564 1.21650 0.91244 0.99896 1.02224 1.19649 0.95512 0.89890 0.84185 0.92962 1.20929 0.90391 1.34763 1.04051 0.93173 1.24770 0.97058 0.96170 0.95899 1.69889 1.34024 1.39945 1.09627 0.86757 0.87014 0.77200 0.77959 1.20973 1.21473 1.20214 1.71522 1.11406 1.09211 1.33785 1.19538 0.94037 0.91987 0.83797 1.41692 1.63396 1.24255 1.12024 1.21107 0.92592 0.93236 0.94647 1.21820 1.00153 0.97056 0.98725 1.21224 0.97406 0.99059 0.92734 1.18960 0.97710 0.97837 0.95864 1.20829 0.99587 0.99713 0.93074 1.20862 0.95730 0.97497 0.98948 1.20859 0.99646 0.96201 0.97712 1.21167 0.96781 0.98543 0.91137 1.19125 0.95085 0.91880 0.93599 1.68838 1.19221 1.21393 0.99152 0.94695 0.95072 0.94323 0.88518 0.94609 0.93434 0.76936 0.78065 0.85167 0.84929 0.85950 0.86169 0.85753 0.83582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.80 37.16 0.36 -2.78 16 2 C -0.11 -2.87 5.45 -26.73 -0.15 -3.01 16 3 C 0.22 5.70 1.52 -69.09 -0.11 5.59 16 4 H 0.05 1.48 4.86 -51.93 -0.25 1.22 16 5 C -0.46 -13.19 8.27 -34.44 -0.28 -13.48 16 6 H 0.05 1.51 7.81 -52.48 -0.41 1.10 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -25.27 11.29 55.43 0.63 -24.64 16 9 Si 0.88 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.54 -12.79 9.64 -53.08 -0.51 -13.30 16 14 C 0.39 7.73 7.86 -154.32 -1.21 6.52 16 15 N -0.86 -12.28 8.95 32.51 0.29 -11.99 16 16 C 0.14 2.75 6.25 -82.94 -0.52 2.23 16 17 C -0.16 -2.32 9.39 -39.46 -0.37 -2.69 16 18 C -0.08 -1.09 9.88 -39.26 -0.39 -1.48 16 19 C -0.10 -1.66 5.75 -106.73 -0.61 -2.27 16 20 C -0.11 -1.52 9.77 -39.52 -0.39 -1.91 16 21 C -0.11 -1.48 9.96 -39.90 -0.40 -1.87 16 22 C -0.12 -1.92 9.94 -39.94 -0.40 -2.32 16 23 C -0.06 -1.13 9.99 -39.42 -0.39 -1.52 16 24 C 0.13 2.54 6.61 -84.86 -0.56 1.98 16 25 N -0.38 -8.48 6.16 -7.54 -0.05 -8.52 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.82 7.75 -51.93 -0.40 0.42 16 29 H 0.10 2.70 5.95 -51.93 -0.31 2.40 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.40 5.31 8.95 -40.82 -0.37 4.94 16 33 H 0.39 4.19 7.16 -40.82 -0.29 3.89 16 34 H 0.13 1.43 6.70 -52.49 -0.35 1.08 16 35 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 39 H 0.15 3.26 8.06 -52.49 -0.42 2.84 16 LS Contribution 324.83 15.07 4.90 4.90 Total: -1.00 -32.50 324.83 -10.17 -42.68 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -4.90 Total: 9.46 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -5.50 Total: -15.43 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.36 Total: -58.45 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.50 -10.17 -42.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.109 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds