Wall clock time and date at job start Tue Mar 31 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47561 * 2 1 4 4 C 1.53007 * 109.47311 * 120.00117 * 2 1 3 5 5 N 1.46499 * 109.47302 * 174.99573 * 4 2 1 6 6 N 1.40441 * 126.81913 * 89.97942 * 5 4 2 7 7 C 1.30720 * 106.79068 * 180.02562 * 6 5 4 8 8 N 1.33234 * 108.94479 * 0.24000 * 7 6 5 9 9 C 1.30832 * 109.83313 * 359.58957 * 8 7 6 10 10 C 1.50700 * 125.96850 * 180.12247 * 9 8 7 11 11 S 1.81397 * 109.47308 * 270.33344 * 10 9 8 12 12 C 1.81399 * 103.00118 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47123 * 179.97438 * 12 11 10 14 14 C 1.53008 * 109.47047 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46978 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99770 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99679 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99875 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99527 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47002 * 90.00378 * 19 17 15 21 21 H 1.48503 * 109.46961 * 209.99714 * 19 17 15 22 22 H 1.48499 * 109.47420 * 329.99869 * 19 17 15 23 23 H 1.09007 * 109.46753 * 299.99968 * 1 2 3 24 24 H 1.08996 * 109.46910 * 59.99818 * 1 2 3 25 25 H 1.08998 * 109.47465 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47350 * 239.99694 * 2 1 3 27 27 H 1.09000 * 109.47435 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47157 * 300.00031 * 3 2 1 29 29 H 1.09002 * 109.47406 * 59.99898 * 3 2 1 30 30 H 1.09004 * 109.46799 * 54.99610 * 4 2 1 31 31 H 1.08998 * 109.46680 * 295.00168 * 4 2 1 32 32 H 1.08002 * 125.52440 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.46492 * 30.33012 * 10 9 8 34 34 H 1.08999 * 109.47248 * 150.32833 * 10 9 8 35 35 H 1.08993 * 109.47300 * 300.00121 * 12 11 10 36 36 H 1.09001 * 109.46604 * 59.99887 * 12 11 10 37 37 H 1.08993 * 109.47399 * 300.00388 * 13 12 11 38 38 H 1.09001 * 109.47205 * 60.00583 * 13 12 11 39 39 H 1.08996 * 109.46802 * 300.00264 * 14 13 12 40 40 H 1.08996 * 109.46717 * 60.00688 * 14 13 12 41 41 H 0.96998 * 119.99209 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1905 6 7 4.4313 0.0995 1.6882 7 6 5.6185 -0.3813 1.4268 8 7 5.4838 -1.5456 0.7933 9 6 4.2145 -1.8283 0.6493 10 6 3.6516 -3.0589 -0.0140 11 16 3.4239 -2.7406 -1.7852 12 6 2.7516 -4.3098 -2.3987 13 6 2.4996 -4.2029 -3.9040 14 6 1.9319 -5.5262 -4.4213 15 6 1.6843 -5.4211 -5.9042 16 1 1.9097 -4.5025 -6.4255 17 6 1.1699 -6.4977 -6.5951 18 7 0.8950 -7.6160 -5.9601 19 14 0.8637 -6.3676 -8.4333 20 1 2.0811 -6.7938 -9.1693 21 1 -0.2742 -7.2448 -8.8088 22 1 0.5408 -4.9610 -8.7830 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6053 -1.7199 1.2952 31 1 1.7516 -0.1584 2.1369 32 1 6.5563 0.0911 1.6794 33 1 4.3420 -3.8917 0.1197 34 1 2.6909 -3.3074 0.4370 35 1 3.4647 -5.1110 -2.2053 36 1 1.8134 -4.5273 -1.8881 37 1 1.7863 -3.4017 -4.0970 38 1 3.4375 -3.9851 -4.4148 39 1 2.6449 -6.3276 -4.2282 40 1 0.9938 -5.7434 -3.9105 41 1 0.5335 -8.3735 -6.4464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319897687.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:38 Heat of formation + Delta-G solvation = 42.049095 kcal Electronic energy + Delta-G solvation = -19556.201793 eV Core-core repulsion = 16597.684929 eV Total energy + Delta-G solvation = -2958.516864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.19319 -37.69997 -36.33813 -34.02879 -33.99368 -33.43482 -29.69249 -29.21303 -28.10557 -27.45245 -25.34198 -23.07531 -22.42091 -21.86781 -20.89530 -18.57250 -18.12183 -17.44652 -16.75598 -16.55061 -16.41627 -16.16380 -15.54702 -15.16517 -15.00572 -14.63585 -14.44615 -14.37809 -14.14692 -13.59816 -13.46612 -13.23936 -12.99786 -12.80671 -12.73411 -12.71885 -12.40146 -12.36853 -11.97615 -11.72243 -11.62447 -11.54110 -11.23822 -11.07770 -10.93685 -10.69320 -10.54319 -10.44405 -8.70283 -8.19858 -6.30036 -0.01278 0.95222 1.28544 1.41861 1.42286 1.51114 1.53705 2.01715 2.42188 2.91302 3.14031 3.44496 3.63659 3.73359 3.89208 4.07172 4.08757 4.12105 4.19730 4.26422 4.44044 4.57837 4.62549 4.65031 4.77455 4.85518 4.90594 4.99006 5.00634 5.16567 5.19679 5.21745 5.33202 5.41008 5.45515 5.51694 5.71990 5.73792 5.84945 6.24723 6.85846 7.03791 7.39073 8.91660 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.023731 B = 0.003153 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.594770 B = 8877.342783 C = 9516.640452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C -0.139 4.139 4 C 0.123 3.877 5 N -0.359 5.359 6 N -0.329 5.329 7 C 0.190 3.810 8 N -0.559 5.559 9 C 0.287 3.713 10 C -0.013 4.013 11 S -0.254 6.254 12 C -0.068 4.068 13 C -0.082 4.082 14 C 0.032 3.968 15 C -0.544 4.544 16 H 0.057 0.943 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.961 3.039 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.265 1.265 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.245 0.755 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.051 0.949 39 H -0.003 1.003 40 H 0.001 0.999 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 14.513 17.682 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.135 4.135 3 C -0.197 4.197 4 C 0.002 3.998 5 N -0.150 5.150 6 N -0.157 5.157 7 C -0.112 4.112 8 N -0.288 5.288 9 C 0.010 3.990 10 C -0.162 4.162 11 S -0.028 6.028 12 C -0.216 4.216 13 C -0.121 4.121 14 C -0.007 4.007 15 C -0.583 4.583 16 H 0.075 0.925 17 C -0.195 4.195 18 N -0.571 5.571 19 Si 0.786 3.214 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.189 1.189 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.136 0.864 31 H 0.129 0.871 32 H 0.261 0.739 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.016 0.984 40 H 0.020 0.980 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.595 15.779 17.410 23.551 hybrid contribution -0.349 -1.401 -0.450 1.512 sum 1.246 14.379 16.960 22.270 Atomic orbital electron populations 1.21721 0.91935 1.03042 1.02960 1.21578 0.97917 0.96666 0.97319 1.21750 0.99961 0.95768 1.02186 1.22313 0.72084 1.04401 1.00957 1.50519 1.08475 1.14051 1.41957 1.77998 0.99408 1.14562 1.23772 1.26573 0.98083 0.90814 0.95766 1.70458 1.17096 1.18319 1.22924 1.23351 0.87679 0.92389 0.95605 1.21744 1.05925 0.94488 0.94082 1.87271 1.85474 1.24085 1.05921 1.23444 1.03547 0.95042 0.99565 1.21159 1.00389 0.98927 0.91583 1.18974 0.94839 0.92214 0.94697 1.21673 1.42419 0.99009 0.95162 0.92483 1.25901 0.95236 0.95001 1.03359 1.70072 1.45225 1.03871 1.37890 0.85508 0.77920 0.78408 0.79604 1.19926 1.20634 1.18906 0.91015 0.92110 0.91437 0.90991 0.94796 0.92487 0.91628 0.86437 0.87076 0.73872 0.85792 0.85189 0.89690 0.88887 0.92489 0.93005 0.98430 0.98016 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.19 71.98 0.66 -1.10 16 2 C -0.11 -1.92 3.13 -10.79 -0.03 -1.95 16 3 C -0.14 -2.55 9.06 71.98 0.65 -1.90 16 4 C 0.12 1.85 5.69 86.38 0.49 2.34 16 5 N -0.36 -7.67 3.23 -338.48 -1.09 -8.76 16 6 N -0.33 -7.72 11.82 -61.24 -0.72 -8.44 16 7 C 0.19 4.26 13.03 180.77 2.36 6.61 16 8 N -0.56 -14.80 11.19 -191.78 -2.15 -16.95 16 9 C 0.29 6.78 7.24 138.23 1.00 7.78 16 10 C -0.01 -0.26 6.26 71.24 0.45 0.19 16 11 S -0.25 -6.94 21.03 -56.49 -1.19 -8.13 16 12 C -0.07 -2.06 5.94 71.98 0.43 -1.63 16 13 C -0.08 -3.22 5.16 30.60 0.16 -3.06 16 14 C 0.03 1.60 4.97 29.85 0.15 1.74 16 15 C -0.54 -30.46 9.11 25.60 0.23 -30.23 16 16 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 17 C 0.00 0.18 5.46 84.65 0.46 0.64 16 18 N -0.93 -55.29 13.29 21.45 0.28 -55.01 16 19 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 23 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 1.55 7.44 -2.39 -0.02 1.54 16 27 H 0.03 0.78 6.97 -2.39 -0.02 0.76 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.12 1.25 7.11 -2.39 -0.02 1.23 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.25 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.13 1.88 7.13 -2.39 -0.02 1.87 16 35 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.00 -0.15 8.14 -2.39 -0.02 -0.16 16 40 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -68.12 354.26 5.15 -62.97 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.98 Total: 9.14 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 7.00 Total: -20.57 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -3.68 Total: -89.15 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -6.94 SS G_CDS: -1.19 Total: -8.13 kcal Total: -68.12 5.15 -62.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319897687.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.020 kcal (2) G-P(sol) polarization free energy of solvation -68.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds