Wall clock time and date at job start Tue Mar 31 2020 05:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38226 * 119.61203 * 2 1 4 4 C 1.38632 * 119.15644 * 179.97438 * 3 2 1 5 5 C 1.38669 * 118.42329 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.42087 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47491 * 89.99392 * 6 5 4 8 8 N 1.46498 * 109.47059 * 179.97438 * 7 6 5 9 9 C 1.38826 * 119.99929 * 179.72446 * 8 7 6 10 10 C 1.39803 * 119.58329 * 0.27967 * 9 8 7 11 11 C 1.38598 * 119.49027 * 179.97438 * 10 9 8 12 12 C 1.38380 * 118.68061 * 359.97438 * 11 10 9 13 13 C 1.40559 * 119.15236 * 0.02562 * 12 11 10 14 14 C 1.41316 * 119.78778 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99697 * 359.97438 * 14 13 12 16 16 C 1.40026 * 119.99906 * 179.97438 * 14 13 12 17 17 N 1.30740 * 120.00312 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99593 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47264 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46798 * 120.00373 * 18 16 14 21 21 H 1.48505 * 109.47212 * 240.00102 * 18 16 14 22 22 N 1.31955 * 119.58557 * 180.02562 * 9 8 7 23 23 C 1.38181 * 119.16161 * 0.26810 * 5 4 3 24 24 N 1.31850 * 119.61935 * 179.97438 * 2 1 3 25 25 H 1.09004 * 109.46874 * 90.00170 * 1 2 3 26 26 H 1.09005 * 109.46651 * 209.99717 * 1 2 3 27 27 H 1.08994 * 109.47136 * 329.99903 * 1 2 3 28 28 H 1.07995 * 120.42239 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.78436 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.46801 * 329.99431 * 6 5 4 31 31 H 1.09000 * 109.46987 * 210.00200 * 6 5 4 32 32 H 1.09004 * 109.47066 * 60.00201 * 7 6 5 33 33 H 1.08994 * 109.46974 * 300.00349 * 7 6 5 34 34 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 35 35 H 1.07998 * 120.25142 * 359.95312 * 10 9 8 36 36 H 1.08002 * 120.65631 * 180.02562 * 11 10 9 37 37 H 1.07998 * 120.42591 * 179.97438 * 12 11 10 38 38 H 0.96995 * 120.00059 * 179.97438 * 17 16 14 39 39 H 1.07997 * 119.61655 * 179.70520 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1907 0.0005 5 6 4.2267 -0.0340 0.0005 6 6 5.7323 -0.0985 0.0017 7 6 6.2408 -0.1208 1.4445 8 7 7.7044 -0.1842 1.4455 9 6 8.3973 -0.2086 2.6483 10 6 7.6893 -0.1784 3.8534 11 6 8.3829 -0.2034 5.0530 12 6 9.7653 -0.2585 5.0199 13 6 10.4198 -0.2867 3.7763 14 6 11.8309 -0.3435 3.7268 15 1 12.4029 -0.3647 4.6426 16 6 12.4875 -0.3723 2.4903 17 7 11.7950 -0.3461 1.3816 18 14 14.3529 -0.4467 2.4249 19 1 14.8962 -0.4660 3.8068 20 1 14.7743 -1.6785 1.7105 21 1 14.8709 0.7446 1.7054 22 7 9.7156 -0.2652 2.6396 23 6 3.4768 -1.1946 -0.0057 24 7 2.1588 -1.1462 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6507 2.1373 0.0004 29 1 4.1365 2.1141 0.0001 30 1 6.1338 0.7753 -0.5116 31 1 6.0576 -1.0030 -0.5123 32 1 5.8393 -0.9947 1.9578 33 1 5.9155 0.7836 1.9584 34 1 8.1896 -0.2046 0.6058 35 1 6.6102 -0.1355 3.8495 36 1 7.8550 -0.1812 5.9950 37 1 10.3340 -0.2787 5.9378 38 1 12.2499 -0.3657 0.5252 39 1 3.9757 -2.1524 -0.0106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320489529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:34 Heat of formation + Delta-G solvation = 61.347042 kcal Electronic energy + Delta-G solvation = -20425.248066 eV Core-core repulsion = 17332.124073 eV Total energy + Delta-G solvation = -3093.123994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.44430 -38.26939 -35.99867 -33.98440 -33.08312 -32.43416 -30.74212 -30.13415 -28.53386 -26.34867 -25.31517 -23.78669 -23.02831 -21.63034 -20.98480 -20.30165 -17.36811 -16.84690 -16.51755 -16.07830 -15.36023 -14.91324 -14.63231 -14.57817 -14.41486 -14.16469 -13.44927 -13.27416 -13.11296 -12.81298 -12.65963 -12.51048 -12.33919 -12.04105 -11.73751 -11.52773 -11.34830 -11.08085 -10.96312 -10.60702 -10.41913 -9.91998 -9.88746 -9.56962 -9.48346 -8.89215 -8.87652 -7.90029 -7.50416 -6.51402 -6.32123 -4.46281 0.93820 1.14842 2.87217 3.12010 3.16530 3.24817 3.30488 3.59150 3.99023 4.06272 4.23627 4.55426 4.77549 4.79113 4.85247 4.92859 5.13843 5.23180 5.32947 5.33553 5.39454 5.59003 5.65012 5.82676 5.94643 5.97684 6.09364 6.12979 6.17189 6.29892 6.58030 6.59293 6.86876 6.90713 6.95268 7.25940 7.60845 7.82224 7.85706 7.92991 8.18211 8.37051 8.68976 8.81364 9.13020 10.25342 10.41208 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.032213 B = 0.002939 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.993688 B = 9524.056773 C =10088.950057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.116 3.884 3 C -0.171 4.171 4 C -0.068 4.068 5 C -0.130 4.130 6 C -0.088 4.088 7 C 0.149 3.851 8 N -0.740 5.740 9 C 0.411 3.589 10 C -0.367 4.367 11 C -0.032 4.032 12 C -0.316 4.316 13 C 0.292 3.708 14 C -0.434 4.434 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.716 5.716 18 Si 0.905 3.095 19 H -0.261 1.261 20 H -0.274 1.274 21 H -0.274 1.274 22 N -0.531 5.531 23 C 0.109 3.891 24 N -0.485 5.485 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.396 0.604 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.269 0.731 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.500 2.357 -5.991 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.022 4.022 3 C -0.191 4.191 4 C -0.094 4.094 5 C -0.132 4.132 6 C -0.126 4.126 7 C 0.024 3.976 8 N -0.377 5.377 9 C 0.171 3.829 10 C -0.393 4.393 11 C -0.057 4.057 12 C -0.339 4.339 13 C 0.165 3.835 14 C -0.466 4.466 15 H 0.101 0.899 16 C -0.154 4.154 17 N -0.338 5.338 18 Si 0.729 3.271 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.200 1.200 22 N -0.253 5.253 23 C -0.048 4.048 24 N -0.194 5.194 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.151 0.849 29 H 0.153 0.847 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.230 0.770 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.699 1.557 -6.897 17.218 hybrid contribution 1.022 0.830 0.474 1.399 sum -14.677 2.387 -6.423 16.197 Atomic orbital electron populations 1.20695 0.89016 1.03384 1.02897 1.21293 0.96996 0.88506 0.95356 1.21938 0.94836 0.99211 1.03098 1.21552 0.94301 0.98109 0.95398 1.20771 0.96871 0.94196 1.01365 1.20714 0.89834 1.04040 0.98006 1.20965 0.81594 1.00739 0.94345 1.44106 1.03459 1.84028 1.06144 1.18505 0.90059 0.89887 0.84434 1.20608 0.97588 1.28514 0.92555 1.20597 0.94109 0.95231 0.95719 1.21535 0.93880 1.20468 0.98047 1.18213 0.93134 0.86557 0.85633 1.19615 0.90337 1.43376 0.93293 0.89850 1.26053 1.00221 0.93568 0.95556 1.70159 1.36331 1.29332 0.97990 0.86326 0.82835 0.78421 0.79509 1.18445 1.19954 1.19965 1.68212 1.02412 1.25028 1.29645 1.22707 0.89076 0.98214 0.94850 1.67530 1.09898 1.29367 1.12593 0.90586 0.90537 0.90828 0.84925 0.84676 0.90122 0.89934 0.92982 0.93114 0.76977 0.89299 0.88963 0.88699 0.92030 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.17 36.01 0.37 -0.40 16 2 C 0.12 1.24 6.78 -82.58 -0.56 0.68 16 3 C -0.17 -1.65 9.74 -39.44 -0.38 -2.04 16 4 C -0.07 -0.70 9.86 -39.28 -0.39 -1.09 16 5 C -0.13 -1.47 5.15 -104.49 -0.54 -2.01 16 6 C -0.09 -1.02 5.48 -27.89 -0.15 -1.18 16 7 C 0.15 2.29 4.87 -4.04 -0.02 2.27 16 8 N -0.74 -14.64 5.72 -60.39 -0.35 -14.98 16 9 C 0.41 10.12 7.65 -155.32 -1.19 8.93 16 10 C -0.37 -8.62 9.34 -38.86 -0.36 -8.98 16 11 C -0.03 -0.76 10.15 -39.40 -0.40 -1.16 16 12 C -0.32 -8.12 9.83 -38.65 -0.38 -8.50 16 13 C 0.29 8.21 6.55 -85.00 -0.56 7.66 16 14 C -0.43 -11.85 9.14 -37.74 -0.34 -12.20 16 15 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 16 C 0.07 1.82 5.50 -17.35 -0.10 1.73 16 17 N -0.72 -19.06 11.46 55.55 0.64 -18.42 16 18 Si 0.90 18.78 29.56 -169.99 -5.02 13.76 16 19 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 N -0.53 -14.80 7.89 -10.32 -0.08 -14.88 16 23 C 0.11 1.29 10.86 -17.55 -0.19 1.10 16 24 N -0.48 -6.12 10.27 -9.47 -0.10 -6.22 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.05 0.82 7.92 -51.93 -0.41 0.41 16 33 H 0.05 0.80 7.91 -51.93 -0.41 0.39 16 34 H 0.40 7.68 8.59 -40.82 -0.35 7.33 16 35 H 0.09 1.88 6.68 -52.49 -0.35 1.53 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.27 6.46 8.29 -40.82 -0.34 6.12 16 39 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 335.38 15.07 5.05 5.05 Total: -1.00 -31.41 335.38 -10.34 -41.75 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.29 Total: 9.13 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -5.19 Total: -15.19 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.11 Total: -54.50 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.76 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.41 -10.34 -41.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320489529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.100 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds