Wall clock time and date at job start Tue Mar 31 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 C 1.38221 * 119.61741 * 124.73243 * 5 4 2 7 7 C 1.38631 * 119.16156 * 179.75248 * 6 5 4 8 8 C 1.38679 * 118.41891 * 0.50987 * 7 6 5 9 9 C 1.38181 * 119.15926 * 359.72912 * 8 7 6 10 10 N 1.31855 * 119.61618 * 304.99925 * 5 4 2 11 11 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 12 12 C 1.38826 * 119.99560 * 274.99776 * 11 2 1 13 13 C 1.39797 * 119.58444 * 0.02562 * 12 11 2 14 14 C 1.38602 * 119.48718 * 179.97438 * 13 12 11 15 15 C 1.38388 * 118.68146 * 0.02562 * 14 13 12 16 16 C 1.40561 * 119.14941 * 359.97438 * 15 14 13 17 17 C 1.41318 * 119.78260 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99821 * 0.02562 * 17 16 15 19 19 C 1.40027 * 119.99590 * 180.02562 * 17 16 15 20 20 N 1.30733 * 120.00237 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99566 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47102 * 90.00192 * 21 19 17 23 23 H 1.48500 * 109.47190 * 210.00111 * 21 19 17 24 24 H 1.48504 * 109.47277 * 329.99774 * 21 19 17 25 25 N 1.31954 * 119.58038 * 179.72770 * 12 11 2 26 26 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 27 27 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 29 29 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 30 30 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 31 31 H 1.08000 * 120.42134 * 359.97438 * 6 5 4 32 32 H 1.08000 * 120.79504 * 180.25728 * 7 6 5 33 33 H 1.07999 * 120.42025 * 179.70977 * 8 7 6 34 34 H 1.08007 * 119.61321 * 180.02562 * 9 8 7 35 35 H 0.96993 * 119.99992 * 94.99462 * 11 2 1 36 36 H 1.07994 * 120.25847 * 359.95766 * 13 12 11 37 37 H 1.07994 * 120.65883 * 180.02562 * 14 13 12 38 38 H 1.08002 * 120.42268 * 179.97438 * 15 14 13 39 39 H 0.97005 * 120.00180 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 6 4.3046 -1.7638 -1.4075 7 6 5.6852 -1.6547 -1.4706 8 6 6.2500 -0.3890 -1.4249 9 6 5.4236 0.7139 -1.3246 10 7 4.1134 0.5726 -1.2719 11 7 2.0184 -0.6907 1.1962 12 6 2.1510 0.0018 2.3920 13 6 1.8155 1.3579 2.4451 14 6 1.9481 2.0472 3.6402 15 6 2.4126 1.3662 4.7518 16 6 2.7334 0.0027 4.6347 17 6 3.2083 -0.7059 5.7614 18 1 3.3233 -0.1998 6.7085 19 6 3.5297 -2.0642 5.6497 20 7 3.3909 -2.6767 4.5031 21 14 4.1581 -3.0007 7.1388 22 1 3.0099 -3.5881 7.8749 23 1 5.0679 -4.0865 6.6930 24 1 4.8962 -2.0722 8.0323 25 7 2.5865 -0.6297 3.4657 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7515 -1.7715 -1.2057 30 1 1.6053 -0.2617 -2.1370 31 1 3.8309 -2.7339 -1.4358 32 1 6.3063 -2.5347 -1.5492 33 1 7.3223 -0.2669 -1.4669 34 1 5.8557 1.7031 -1.2889 35 1 2.2490 -1.6319 1.1525 36 1 1.4560 1.8645 1.5617 37 1 1.6941 3.0950 3.7027 38 1 2.5272 1.8758 5.6970 39 1 3.6132 -3.6178 4.4258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327723277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:17 Heat of formation + Delta-G solvation = 50.018500 kcal Electronic energy + Delta-G solvation = -21615.582073 eV Core-core repulsion = 18521.966837 eV Total energy + Delta-G solvation = -3093.615236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.14419 -40.11149 -37.74893 -35.38489 -33.79502 -33.18924 -32.38184 -31.65356 -29.69939 -27.98045 -27.18704 -24.48315 -23.64979 -23.38938 -22.62296 -21.24220 -19.20174 -18.20906 -17.66121 -17.21214 -16.59117 -16.57733 -16.34456 -15.93679 -15.34795 -15.25038 -14.85382 -14.54107 -14.34973 -14.01914 -13.80708 -13.52674 -13.30905 -13.04214 -12.85442 -12.82477 -12.71718 -12.57719 -12.32513 -12.14033 -11.81680 -11.68733 -11.26640 -10.75541 -10.62573 -10.29194 -9.83179 -9.80086 -9.41928 -8.23248 -8.20898 -6.46140 0.24244 0.43088 1.08471 1.37055 1.40419 1.53465 1.59024 2.25123 2.70131 2.90093 2.94359 3.44071 3.73161 4.00848 4.07533 4.10843 4.28225 4.31162 4.33207 4.44088 4.46138 4.67701 4.73969 4.77892 4.86956 4.90018 4.96821 5.01047 5.01974 5.13863 5.18882 5.29407 5.31061 5.41141 5.44806 5.74939 5.86268 5.99191 6.11001 6.24300 6.60796 6.86607 6.99422 7.13198 7.27589 8.37503 8.53184 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.005435 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.745106 B = 5150.714722 C = 6015.206680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 H 0.068 0.932 4 C -0.070 4.070 5 C 0.121 3.879 6 C -0.180 4.180 7 C -0.081 4.081 8 C -0.185 4.185 9 C 0.080 3.920 10 N -0.507 5.507 11 N -0.722 5.722 12 C 0.404 3.596 13 C -0.364 4.364 14 C -0.032 4.032 15 C -0.349 4.349 16 C 0.259 3.741 17 C -0.473 4.473 18 H 0.084 0.916 19 C 0.027 3.973 20 N -0.750 5.750 21 Si 0.984 3.016 22 H -0.263 1.263 23 H -0.267 1.267 24 H -0.258 1.258 25 N -0.565 5.565 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.389 0.611 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 -0.940 -13.630 13.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.061 3.939 3 H 0.086 0.914 4 C -0.108 4.108 5 C -0.016 4.016 6 C -0.199 4.199 7 C -0.107 4.107 8 C -0.204 4.204 9 C -0.076 4.076 10 N -0.217 5.217 11 N -0.356 5.356 12 C 0.163 3.837 13 C -0.390 4.390 14 C -0.056 4.056 15 C -0.372 4.372 16 C 0.132 3.868 17 C -0.506 4.506 18 H 0.102 0.898 19 C -0.195 4.195 20 N -0.372 5.372 21 Si 0.805 3.195 22 H -0.188 1.188 23 H -0.192 1.192 24 H -0.182 1.182 25 N -0.287 5.287 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.118 0.882 30 H 0.133 0.867 31 H 0.168 0.832 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.183 0.817 35 H 0.222 0.778 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.118 0.882 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.436 -1.098 -13.863 13.981 hybrid contribution 0.737 -0.344 0.839 1.168 sum 2.173 -1.443 -13.025 13.283 Atomic orbital electron populations 1.22227 0.94909 1.02460 1.02171 1.20794 0.93730 0.96450 0.82923 0.91443 1.20899 0.88562 1.02983 0.98318 1.21427 0.97417 0.88624 0.94171 1.22268 0.95247 1.00164 1.02231 1.21954 0.95178 0.98794 0.94777 1.22414 1.02547 0.93429 1.02043 1.23093 0.88948 1.00422 0.95180 1.67384 1.13720 1.27675 1.12920 1.44363 1.73318 1.11710 1.06187 1.18913 0.88889 0.88456 0.87488 1.20941 1.23787 0.95054 0.99209 1.20981 0.93944 0.98438 0.92277 1.21658 1.19427 0.96833 0.99255 1.18675 0.88014 0.89380 0.90713 1.19901 1.39095 0.95492 0.96069 0.89829 1.26929 0.94137 0.98532 0.99893 1.70254 1.30670 1.10335 1.25940 0.85190 0.78795 0.77837 0.77703 1.18772 1.19186 1.18198 1.68207 1.25096 1.37056 0.98378 0.89404 0.92037 0.94319 0.88237 0.86717 0.83186 0.82504 0.82508 0.81680 0.77751 0.86922 0.85752 0.88245 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 9.40 71.98 0.68 -3.63 16 2 C 0.17 5.22 2.18 44.99 0.10 5.32 16 3 H 0.07 2.41 6.09 -2.39 -0.01 2.40 16 4 C -0.07 -1.69 5.16 29.85 0.15 -1.53 16 5 C 0.12 3.47 5.91 42.55 0.25 3.72 16 6 C -0.18 -4.54 9.71 22.36 0.22 -4.33 16 7 C -0.08 -1.88 10.18 22.47 0.23 -1.66 16 8 C -0.18 -4.35 10.11 22.36 0.23 -4.13 16 9 C 0.08 2.22 11.18 84.67 0.95 3.17 16 10 N -0.51 -16.14 9.78 -183.88 -1.80 -17.94 16 11 N -0.72 -29.45 4.95 -324.45 -1.61 -31.05 16 12 C 0.40 20.51 7.63 133.42 1.02 21.53 16 13 C -0.36 -17.48 8.84 22.73 0.20 -17.28 16 14 C -0.03 -1.55 10.15 22.39 0.23 -1.33 16 15 C -0.35 -18.78 9.83 22.87 0.22 -18.55 16 16 C 0.26 15.40 6.55 40.18 0.26 15.66 16 17 C -0.47 -27.18 9.14 23.46 0.21 -26.97 16 18 H 0.08 4.53 7.85 -2.91 -0.02 4.51 16 19 C 0.03 1.42 5.50 85.29 0.47 1.89 16 20 N -0.75 -41.31 11.46 21.84 0.25 -41.06 16 21 Si 0.98 39.51 29.56 68.60 2.03 41.54 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 24 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 25 N -0.56 -32.87 7.89 -186.58 -1.47 -34.35 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.04 1.24 7.64 -2.38 -0.02 1.22 16 29 H 0.10 2.03 7.87 -2.39 -0.02 2.01 16 30 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.15 3.06 7.95 -2.91 -0.02 3.03 16 32 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 33 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 35 H 0.39 16.06 8.72 -92.71 -0.81 15.26 16 36 H 0.11 4.84 6.04 -2.91 -0.02 4.82 16 37 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 38 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16 39 H 0.28 13.65 8.29 -92.70 -0.77 12.88 16 Total: -1.00 -71.58 331.59 3.07 -68.52 By element: Atomic # 1 Polarization: 42.20 SS G_CDS: 0.25 Total: 42.45 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 5.42 Total: -28.11 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -4.63 Total: -124.39 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -71.58 3.07 -68.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327723277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.534 kcal (2) G-P(sol) polarization free energy of solvation -71.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds