Wall clock time and date at job start Tue Mar 31 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86806 * 119.99804 * 2 1 4 4 H 1.48500 * 109.47113 * 274.94345 * 3 2 1 5 5 H 1.48503 * 109.47007 * 34.94196 * 3 2 1 6 6 H 1.48499 * 109.46763 * 154.93967 * 3 2 1 7 7 C 1.40047 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99682 * 187.75590 * 7 2 1 9 9 C 1.46374 * 119.99763 * 7.75755 * 7 2 1 10 10 O 1.21689 * 120.00198 * 352.42817 * 9 7 2 11 11 N 1.34775 * 119.99557 * 172.43636 * 9 7 2 12 12 C 1.46504 * 119.99707 * 179.97438 * 11 9 7 13 13 H 1.09003 * 109.46990 * 357.20382 * 12 11 9 14 14 C 1.53004 * 109.46929 * 237.20623 * 12 11 9 15 15 C 1.53004 * 117.49542 * 128.74925 * 14 12 11 16 16 C 1.52999 * 117.50044 * 60.09200 * 14 12 11 17 17 C 1.53001 * 109.46984 * 117.20681 * 12 11 9 18 18 C 1.52997 * 109.54141 * 65.57272 * 17 12 11 19 19 O 1.42902 * 109.47254 * 299.45529 * 18 17 12 20 20 C 1.53181 * 109.54177 * 185.82590 * 17 12 11 21 21 C 1.53088 * 109.15820 * 176.83484 * 20 17 12 22 22 O 1.42905 * 109.42648 * 302.40670 * 21 20 17 23 23 C 1.42907 * 114.09619 * 61.15609 * 22 21 20 24 24 C 1.53093 * 109.41301 * 298.84391 * 23 22 21 25 25 H 0.97006 * 119.99995 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00548 * 0.02562 * 11 9 7 27 27 H 1.09001 * 115.54932 * 274.41245 * 14 12 11 28 28 H 1.08993 * 117.50198 * 359.97438 * 15 14 12 29 29 H 1.09005 * 117.49709 * 145.01913 * 15 14 12 30 30 H 1.08998 * 117.49409 * 214.97819 * 16 14 12 31 31 H 1.09000 * 117.50010 * 359.97438 * 16 14 12 32 32 H 1.08994 * 109.47561 * 59.45972 * 18 17 12 33 33 H 1.09004 * 109.46938 * 179.46085 * 18 17 12 34 34 H 0.96697 * 113.99992 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.51207 * 56.94022 * 20 17 12 36 36 H 1.08998 * 109.53127 * 296.74848 * 20 17 12 37 37 H 1.09003 * 109.47836 * 182.42178 * 21 20 17 38 38 H 1.08994 * 109.48559 * 62.40179 * 21 20 17 39 39 H 1.08999 * 109.47930 * 58.82232 * 23 22 21 40 40 H 1.08996 * 109.47881 * 178.84462 * 23 22 21 41 41 H 1.09003 * 109.51938 * 177.51733 * 24 23 22 42 42 H 1.08999 * 109.51737 * 297.69716 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3837 2.1068 -1.3949 5 1 1.4942 2.6203 0.8019 6 1 3.5865 1.4123 0.5930 7 6 2.0070 -1.2128 0.0005 8 1 3.0795 -1.2170 0.1268 9 6 1.2851 -2.4747 -0.1700 10 8 0.0683 -2.4839 -0.1740 11 7 1.9683 -3.6265 -0.3224 12 6 1.2458 -4.8896 -0.4925 13 1 0.1735 -4.7075 -0.4198 14 6 1.6716 -5.8718 0.6006 15 6 0.5650 -6.5501 1.4108 16 6 1.4271 -5.4609 2.0539 17 6 1.5707 -5.4820 -1.8653 18 6 3.0504 -5.8669 -1.9194 19 8 3.8533 -4.7028 -1.7134 20 6 0.7073 -6.7245 -2.1045 21 6 0.9817 -7.2639 -3.5107 22 8 0.7118 -6.2422 -4.4727 23 6 1.5230 -5.0748 -4.3273 24 6 1.2702 -4.4473 -2.9540 25 1 -0.4850 0.8401 -0.0004 26 1 2.9382 -3.6193 -0.3187 27 1 2.5675 -6.4544 0.3861 28 1 -0.4662 -6.2963 1.1655 29 1 0.7332 -7.5788 1.7298 30 1 2.1621 -5.7734 2.7957 31 1 0.9633 -4.4906 2.2314 32 1 3.2644 -6.5983 -1.1401 33 1 3.2784 -6.2976 -2.8944 34 1 4.8050 -4.8725 -1.7353 35 1 -0.3461 -6.4585 -2.0156 36 1 0.9547 -7.4877 -1.3668 37 1 0.3386 -8.1228 -3.7025 38 1 2.0258 -7.5676 -3.5862 39 1 2.5743 -5.3497 -4.4133 40 1 1.2701 -4.3569 -5.1074 41 1 1.9202 -3.5820 -2.8236 42 1 0.2283 -4.1352 -2.8824 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332223613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:21 Heat of formation + Delta-G solvation = -110.941415 kcal Electronic energy + Delta-G solvation = -24463.061815 eV Core-core repulsion = 21022.865163 eV Total energy + Delta-G solvation = -3440.196652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.26550 -37.83809 -36.34669 -36.12005 -33.91180 -32.49106 -31.59249 -30.76745 -27.60997 -26.26037 -25.12813 -23.43819 -22.93461 -21.88782 -20.24816 -19.30177 -18.46038 -17.46314 -16.71987 -16.24800 -15.80023 -15.26011 -15.21897 -14.92251 -14.59347 -14.28507 -13.82920 -13.59180 -13.18075 -12.89062 -12.41214 -12.37858 -12.15930 -11.87814 -11.71208 -11.24836 -11.12004 -11.05619 -11.01085 -10.88759 -10.59529 -10.41970 -10.20174 -10.14047 -9.89187 -9.79390 -9.68056 -9.57576 -9.12290 -8.75143 -7.44395 -7.22682 -6.09458 -4.50794 3.18727 3.25987 3.29309 4.04807 4.08446 4.23725 4.35267 4.67544 4.76857 4.96069 5.07553 5.16545 5.23201 5.29505 5.35886 5.37322 5.46902 5.50620 5.60959 5.70250 5.74658 5.78180 5.83445 5.95032 5.95762 6.06459 6.18258 6.25208 6.33013 6.38846 6.48933 6.59716 6.68690 6.84405 6.90269 7.38141 7.53981 7.82798 8.18699 8.40059 8.52070 9.14022 9.80932 10.71857 10.94441 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.006236 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.434390 B = 4488.931193 C = 5181.628623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.089 3.911 3 Si 0.902 3.098 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.559 3.441 10 O -0.588 6.588 11 N -0.741 5.741 12 C 0.193 3.807 13 H 0.090 0.910 14 C -0.160 4.160 15 C -0.183 4.183 16 C -0.166 4.166 17 C -0.062 4.062 18 C 0.083 3.917 19 O -0.551 6.551 20 C -0.142 4.142 21 C 0.061 3.939 22 O -0.387 6.387 23 C 0.061 3.939 24 C -0.133 4.133 25 H 0.265 0.735 26 H 0.390 0.610 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.369 0.631 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.857 -14.100 -3.817 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.130 4.130 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.362 3.638 10 O -0.472 6.472 11 N -0.397 5.397 12 C 0.085 3.915 13 H 0.108 0.892 14 C -0.179 4.179 15 C -0.221 4.221 16 C -0.203 4.203 17 C -0.063 4.063 18 C 0.005 3.995 19 O -0.355 6.355 20 C -0.180 4.180 21 C -0.016 4.016 22 O -0.306 6.306 23 C -0.016 4.016 24 C -0.170 4.170 25 H 0.076 0.924 26 H 0.226 0.774 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.215 0.785 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.072 -13.700 -3.913 15.124 hybrid contribution 1.745 0.507 0.237 1.833 sum 6.817 -13.193 -3.676 15.299 Atomic orbital electron populations 1.70038 1.06977 1.26911 1.35958 1.25668 0.94497 1.00070 0.92744 0.86457 0.80313 0.81960 0.78562 1.19938 1.20639 1.19001 1.20875 0.94280 0.89869 1.53105 0.91681 1.18166 0.86976 0.82646 0.75987 1.90573 1.14276 1.86208 1.56161 1.46093 1.09425 1.04796 1.79352 1.19979 0.98704 0.84327 0.88483 0.89203 1.22834 0.99428 1.01912 0.93746 1.22963 0.96724 0.96925 1.05446 1.22798 1.02591 0.99816 0.95114 1.20970 0.92425 0.95196 0.97744 1.22369 0.91458 0.87445 0.98183 1.86572 1.20189 1.33435 1.95276 1.22171 1.01258 0.97494 0.97059 1.22576 0.99902 0.90639 0.88517 1.87899 1.62287 1.26952 1.53459 1.22678 0.93787 0.86890 0.98214 1.22039 1.03646 0.98936 0.92412 0.92384 0.77382 0.88616 0.88967 0.89666 0.89752 0.88242 0.93727 0.94441 0.78500 0.90341 0.90719 0.89326 0.93685 0.93640 0.89268 0.88990 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.37 11.87 55.55 0.66 -22.71 16 2 C 0.09 2.53 5.49 -17.37 -0.10 2.43 16 3 Si 0.90 20.58 29.57 -169.99 -5.03 15.56 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.54 -15.56 9.53 -35.63 -0.34 -15.90 16 8 H 0.06 1.74 7.86 -52.49 -0.41 1.33 16 9 C 0.56 15.72 7.74 -12.99 -0.10 15.62 16 10 O -0.59 -18.83 14.39 5.20 0.07 -18.75 16 11 N -0.74 -16.35 3.44 -55.21 -0.19 -16.54 16 12 C 0.19 3.61 1.80 -67.93 -0.12 3.49 16 13 H 0.09 2.05 6.66 -51.93 -0.35 1.70 16 14 C -0.16 -2.49 4.21 -90.62 -0.38 -2.88 16 15 C -0.18 -2.64 10.18 -26.69 -0.27 -2.91 16 16 C -0.17 -2.74 10.13 -26.69 -0.27 -3.01 16 17 C -0.06 -0.96 0.29 -154.33 -0.04 -1.00 16 18 C 0.08 1.05 5.03 37.16 0.19 1.24 16 19 O -0.55 -7.44 9.87 -35.23 -0.35 -7.79 16 20 C -0.14 -1.87 4.70 -26.59 -0.12 -2.00 16 21 C 0.06 0.73 6.57 37.20 0.24 0.97 16 22 O -0.39 -5.81 10.77 -35.23 -0.38 -6.19 16 23 C 0.06 0.90 6.57 37.21 0.24 1.14 16 24 C -0.13 -2.37 4.53 -26.59 -0.12 -2.49 16 25 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 26 H 0.39 8.11 6.23 -40.82 -0.25 7.85 16 27 H 0.10 1.31 5.80 -51.93 -0.30 1.01 16 28 H 0.09 1.42 8.05 -51.93 -0.42 1.00 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.10 2.02 8.14 -51.93 -0.42 1.59 16 32 H 0.04 0.51 5.94 -51.93 -0.31 0.20 16 33 H 0.04 0.43 5.02 -51.93 -0.26 0.17 16 34 H 0.37 3.19 9.12 45.56 0.42 3.61 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 0.85 7.52 -51.93 -0.39 0.46 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.48 6.60 -51.93 -0.34 0.13 16 39 H 0.05 0.61 6.62 -51.93 -0.34 0.26 16 40 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.88 7.04 -51.93 -0.37 1.52 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 325.72 15.07 4.91 4.91 Total: -1.00 -34.61 325.72 -6.92 -41.53 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -5.42 Total: 15.27 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.20 Total: -5.28 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.47 Total: -39.25 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.65 Total: -32.73 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.61 -6.92 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332223613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.414 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds