Wall clock time and date at job start Tue Mar 31 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47584 * 2 1 4 4 C 1.53005 * 109.46855 * 240.00018 * 2 1 3 5 5 C 1.50701 * 109.46742 * 65.00289 * 4 2 1 6 6 H 1.07996 * 120.00329 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00052 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00577 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99808 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47164 * 90.00109 * 9 7 5 11 11 H 1.48508 * 109.47155 * 209.99993 * 9 7 5 12 12 H 1.48494 * 109.47289 * 329.99734 * 9 7 5 13 13 C 1.53002 * 109.47483 * 120.00682 * 2 1 3 14 14 N 1.46904 * 109.46937 * 294.99714 * 13 2 1 15 15 C 1.46890 * 110.99966 * 179.97438 * 14 13 2 16 16 C 1.50702 * 109.47198 * 179.97438 * 15 14 13 17 17 C 1.38256 * 119.99963 * 269.72882 * 16 15 14 18 18 C 1.38218 * 120.00086 * 180.34241 * 17 16 15 19 19 C 1.38254 * 120.00113 * 359.88490 * 18 17 16 20 20 C 1.38221 * 119.99697 * 0.09108 * 19 18 17 21 21 C 1.50696 * 119.99666 * 180.02562 * 20 19 18 22 22 F 1.39904 * 109.47208 * 119.97644 * 21 20 19 23 23 F 1.39899 * 109.47089 * 239.97280 * 21 20 19 24 24 C 1.38215 * 120.00248 * 89.99932 * 16 15 14 25 25 H 1.08999 * 109.46713 * 299.99606 * 1 2 3 26 26 H 1.08995 * 109.47059 * 59.99445 * 1 2 3 27 27 H 1.08992 * 109.47584 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47468 * 184.99845 * 4 2 1 29 29 H 1.08999 * 109.47393 * 305.00105 * 4 2 1 30 30 H 0.96991 * 120.00065 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47537 * 174.99839 * 13 2 1 32 32 H 1.08998 * 109.46963 * 54.99177 * 13 2 1 33 33 H 1.00901 * 110.99903 * 56.03822 * 14 13 2 34 34 H 1.09003 * 109.47170 * 60.00175 * 15 14 13 35 35 H 1.09006 * 109.47703 * 299.99760 * 15 14 13 36 36 H 1.08001 * 120.00211 * 0.27430 * 17 16 15 37 37 H 1.08005 * 120.00064 * 179.97438 * 18 17 16 38 38 H 1.07999 * 120.00136 * 180.10848 * 19 18 17 39 39 H 1.08996 * 109.47385 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.99286 * 359.70252 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9930 -0.4015 -3.7283 8 7 1.6447 0.2775 -4.7994 9 14 2.9633 -1.9882 -3.9029 10 1 2.0241 -3.1324 -4.0203 11 1 3.8123 -1.9180 -5.1194 12 1 3.8250 -2.1756 -2.7082 13 6 2.0401 -0.7214 1.2491 14 7 1.6515 0.0372 2.4456 15 6 2.1249 -0.6274 3.6671 16 6 1.7090 0.1783 4.8708 17 6 2.5443 1.1624 5.3661 18 6 2.1660 1.8966 6.4744 19 6 0.9514 1.6485 7.0863 20 6 0.1161 0.6650 6.5908 21 6 -1.2082 0.3950 7.2574 22 9 -2.2435 0.6063 6.3406 23 9 -1.2439 -0.9305 7.7037 24 6 0.4951 -0.0703 5.4831 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1262 -0.7995 -1.2058 29 1 1.6053 -1.7198 -1.2953 30 1 1.8926 -0.0450 -5.6799 31 1 3.1263 -0.7996 1.2055 32 1 1.6053 -1.7199 1.2950 33 1 0.6530 0.1792 2.4753 34 1 3.2118 -0.7054 3.6404 35 1 1.6905 -1.6252 3.7296 36 1 3.4929 1.3568 4.8877 37 1 2.8187 2.6651 6.8616 38 1 0.6550 2.2233 7.9512 39 1 -1.3315 1.0675 8.1062 40 1 -0.1575 -0.8388 5.0958 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336754272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:16 Heat of formation + Delta-G solvation = -96.259088 kcal Electronic energy + Delta-G solvation = -21298.884965 eV Core-core repulsion = 17748.237470 eV Total energy + Delta-G solvation = -3550.647495 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.26129 -47.24908 -39.73943 -37.07969 -34.47284 -32.50560 -31.99083 -30.98332 -27.64513 -26.56097 -26.19068 -24.42276 -22.37203 -21.83394 -21.26618 -19.05157 -17.67142 -17.53812 -17.47762 -16.79070 -16.39615 -15.82784 -15.05172 -14.87643 -14.61427 -14.19694 -13.99696 -13.93765 -13.62340 -13.35979 -13.14609 -13.03710 -12.70415 -12.55182 -12.15896 -12.04841 -11.95152 -11.66532 -11.33231 -11.08398 -11.00185 -10.72684 -10.42546 -9.81952 -9.72574 -9.50732 -9.32172 -9.12504 -9.04124 -8.50781 -8.26572 -6.00907 -3.97897 0.83377 1.01724 3.29763 3.32018 3.39218 3.39551 3.42993 3.83283 4.14828 4.44692 4.47693 4.59661 4.67282 4.73927 4.77140 5.03732 5.13838 5.26484 5.32570 5.42912 5.58002 5.63835 5.67128 5.74303 5.94852 5.99348 6.06602 6.13688 6.30951 6.36980 6.45819 6.57598 6.75608 6.96426 7.06651 7.18310 7.32216 7.46012 7.55392 7.83680 8.58555 9.04910 9.61924 11.12575 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.027519 B = 0.002858 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.220518 B = 9795.202335 C =10146.025355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.061 3.939 14 N -0.684 5.684 15 C 0.094 3.906 16 C -0.077 4.077 17 C -0.075 4.075 18 C -0.123 4.123 19 C -0.090 4.090 20 C -0.173 4.173 21 C 0.313 3.687 22 F -0.199 7.199 23 F -0.201 7.201 24 C -0.075 4.075 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.015 0.985 29 H 0.009 0.991 30 H 0.262 0.738 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.341 0.659 34 H 0.082 0.918 35 H 0.038 0.962 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.286 0.667 27.668 27.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.094 4.094 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.316 5.316 15 C -0.035 4.035 16 C -0.077 4.077 17 C -0.094 4.094 18 C -0.141 4.141 19 C -0.108 4.108 20 C -0.174 4.174 21 C 0.260 3.740 22 F -0.180 7.180 23 F -0.183 7.183 24 C -0.094 4.094 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.033 0.967 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.161 0.839 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.762 1.046 27.411 27.442 hybrid contribution -0.221 -1.678 -0.283 1.716 sum -0.984 -0.633 27.128 27.154 Atomic orbital electron populations 1.21755 0.96205 1.00538 1.00887 1.21034 0.95254 1.00223 0.92923 0.90970 1.19602 0.95924 0.95684 0.93394 1.21135 1.35269 1.09593 0.89090 0.90811 1.25033 0.95670 0.96948 0.95955 1.69913 1.47197 1.39352 0.98005 0.86801 0.80642 0.84323 0.77628 1.20438 1.21482 1.19078 1.22204 1.00391 0.94527 0.89615 1.60621 1.20085 1.50151 1.00742 1.20918 1.01077 0.94035 0.87491 1.19883 0.94086 0.97223 0.96542 1.21250 0.99699 0.93649 0.94785 1.21149 0.96466 1.00134 0.96386 1.20899 0.94090 0.96243 0.99557 1.20268 0.96582 1.00952 0.99591 1.20398 0.83437 0.80774 0.89424 1.93034 1.60713 1.94701 1.69543 1.93014 1.96819 1.38691 1.89732 1.20887 0.95974 0.98387 0.94110 0.94711 0.91270 0.94060 0.96670 0.97244 0.92827 0.91342 0.95688 0.83948 0.89970 0.94426 0.85134 0.85242 0.85454 0.86601 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.48 2.55 -90.62 -0.23 -1.71 16 3 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 4 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 5 C -0.51 -14.53 8.96 -34.44 -0.31 -14.84 16 6 H 0.07 2.24 7.30 -52.49 -0.38 1.86 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.09 13.96 55.43 0.77 -27.32 16 9 Si 0.88 21.86 27.47 -169.99 -4.67 17.20 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.06 0.98 5.14 -3.82 -0.02 0.96 16 14 N -0.68 -9.56 6.49 -115.06 -0.75 -10.31 16 15 C 0.09 1.08 5.81 -4.98 -0.03 1.05 16 16 C -0.08 -0.83 5.39 -104.62 -0.56 -1.39 16 17 C -0.08 -0.72 9.70 -39.58 -0.38 -1.11 16 18 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 19 C -0.09 -0.69 9.67 -39.58 -0.38 -1.07 16 20 C -0.17 -1.61 5.37 -104.63 -0.56 -2.17 16 21 C 0.31 2.60 5.45 36.00 0.20 2.80 16 22 F -0.20 -2.12 17.26 2.25 0.04 -2.08 16 23 F -0.20 -2.03 17.26 2.25 0.04 -1.99 16 24 C -0.07 -0.80 9.26 -39.58 -0.37 -1.16 16 25 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 26 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 29 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.34 4.74 6.97 -39.29 -0.27 4.46 16 34 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 35 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.13 0.59 7.95 -52.49 -0.42 0.18 16 39 H 0.12 0.53 7.88 -51.93 -0.41 0.12 16 40 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -31.53 338.00 -8.31 -39.84 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.92 Total: 0.30 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -2.92 Total: -20.73 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.03 Total: -37.63 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.08 Total: -4.07 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.53 -8.31 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336754272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.415 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds