Wall clock time and date at job start Tue Mar 31 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00039 * 2 1 4 4 H 1.48495 * 109.47349 * 91.67710 * 3 2 1 5 5 H 1.48502 * 109.46919 * 211.67934 * 3 2 1 6 6 H 1.48502 * 109.47086 * 331.67464 * 3 2 1 7 7 C 1.37877 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99968 * 354.14563 * 7 2 1 9 9 C 1.50694 * 120.00167 * 174.14699 * 7 2 1 10 10 C 1.53001 * 115.54998 * 268.83896 * 9 7 2 11 11 N 1.46893 * 109.47179 * 305.58151 * 10 9 7 12 12 C 1.46900 * 111.00010 * 181.37280 * 11 10 9 13 13 C 1.52998 * 109.54679 * 297.62441 * 12 11 10 14 14 C 1.50706 * 109.46993 * 294.98949 * 13 12 11 15 15 O 1.20824 * 119.99818 * 6.80900 * 14 13 12 16 16 O 1.34222 * 120.00008 * 186.80909 * 14 13 12 17 17 C 1.53173 * 109.54520 * 177.35303 * 12 11 10 18 18 C 1.53089 * 109.16539 * 297.11410 * 17 12 11 19 19 O 1.42907 * 109.41646 * 302.38942 * 18 17 12 20 20 C 1.42903 * 114.09132 * 61.15600 * 19 18 17 21 21 C 1.53089 * 109.42017 * 298.83855 * 20 19 18 22 22 C 1.53002 * 117.50125 * 123.13526 * 9 7 2 23 23 C 1.53002 * 117.50079 * 54.50939 * 9 7 2 24 24 H 0.97006 * 120.00276 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.47075 * 65.58103 * 10 9 7 26 26 H 1.08999 * 109.47367 * 185.57579 * 10 9 7 27 27 H 1.00896 * 111.00426 * 305.32249 * 11 10 9 28 28 H 1.09002 * 109.47014 * 54.98584 * 13 12 11 29 29 H 1.08997 * 109.47367 * 174.98915 * 13 12 11 30 30 H 0.96701 * 117.00076 * 179.97438 * 16 14 13 31 31 H 1.09004 * 109.52252 * 57.02195 * 17 12 11 32 32 H 1.09006 * 109.52433 * 177.20835 * 17 12 11 33 33 H 1.09006 * 109.48099 * 182.40920 * 18 17 12 34 34 H 1.08996 * 109.48813 * 62.37971 * 18 17 12 35 35 H 1.09002 * 109.47553 * 178.85644 * 20 19 18 36 36 H 1.08999 * 109.49357 * 58.83354 * 20 19 18 37 37 H 1.08996 * 109.52185 * 297.71278 * 21 20 19 38 38 H 1.08996 * 109.52338 * 177.51324 * 21 20 19 39 39 H 1.09001 * 117.49350 * 359.97438 * 22 9 7 40 40 H 1.08996 * 117.50143 * 145.02425 * 22 9 7 41 41 H 1.08996 * 117.50117 * 214.98278 * 23 9 7 42 42 H 1.09001 * 117.49584 * 0.02562 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5322 2.0259 1.3994 5 1 3.5285 1.4506 -0.7353 6 1 1.4293 2.6626 -0.6643 7 6 2.0045 -1.1940 0.0005 8 1 1.4687 -2.1269 0.0964 9 6 3.5056 -1.1976 -0.1325 10 6 4.0411 -1.2980 -1.5623 11 7 3.4621 -2.4768 -2.2203 12 6 3.9798 -2.6240 -3.5872 13 6 3.5725 -1.4086 -4.4225 14 6 2.0727 -1.3778 -4.5665 15 8 1.3907 -2.1653 -3.9543 16 8 1.4944 -0.4756 -5.3747 17 6 3.4066 -3.8968 -4.2178 18 6 3.8843 -5.1124 -3.4192 19 8 5.3130 -5.1342 -3.3962 20 6 5.9039 -3.9908 -2.7752 21 6 5.5074 -2.7301 -3.5479 22 6 4.3114 -1.8816 0.9737 23 6 4.3052 -0.3555 0.8637 24 1 -0.4851 0.8401 -0.0004 25 1 3.7665 -0.4007 -2.1170 26 1 5.1267 -1.3920 -1.5379 27 1 3.6288 -3.3116 -1.6787 28 1 3.9087 -0.4979 -3.9267 29 1 4.0309 -1.4756 -5.4091 30 1 0.5295 -0.4948 -5.4349 31 1 2.3176 -3.8539 -4.1995 32 1 3.7515 -3.9798 -5.2486 33 1 3.5145 -6.0240 -3.8887 34 1 3.5052 -5.0493 -2.3993 35 1 6.9889 -4.0943 -2.7806 36 1 5.5514 -3.9126 -1.7467 37 1 5.8946 -2.7895 -4.5651 38 1 5.9207 -1.8528 -3.0504 39 1 3.7556 -2.3287 1.7980 40 1 5.2231 -2.4033 0.6831 41 1 5.2128 0.1266 0.5008 42 1 3.7454 0.2007 1.6157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:37 Heat of formation + Delta-G solvation = -96.951626 kcal Electronic energy + Delta-G solvation = -24599.733221 eV Core-core repulsion = 21160.143211 eV Total energy + Delta-G solvation = -3439.590010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.56986 -39.11400 -37.24660 -35.94537 -35.11476 -31.93924 -31.28527 -30.72099 -29.33709 -25.93218 -24.70236 -23.86266 -23.15291 -21.70784 -21.01557 -18.97077 -18.55100 -17.51630 -16.61327 -16.26458 -15.94448 -15.87339 -15.60810 -15.03017 -14.75158 -14.59353 -14.15062 -13.82735 -13.42300 -12.80774 -12.69949 -12.48917 -12.32106 -12.06307 -12.00524 -11.83186 -11.41479 -11.32082 -11.07690 -11.01794 -10.72514 -10.45958 -10.36424 -10.23409 -10.04928 -9.67360 -9.47381 -9.32015 -9.02153 -8.46876 -8.36429 -7.58555 -5.95328 -3.93120 2.81824 3.32419 3.42529 3.43964 3.44890 3.94814 4.47881 4.51385 4.72172 4.83943 4.92325 5.02715 5.07996 5.28474 5.30695 5.41179 5.50823 5.59099 5.63873 5.69403 5.75136 5.81818 5.89862 6.00000 6.02641 6.07252 6.14775 6.22389 6.25531 6.42473 6.44009 6.50993 6.70956 7.03753 7.06138 7.16737 7.27679 7.75021 7.86024 8.03910 8.47205 8.66190 9.11587 9.67803 11.17460 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015633 B = 0.007988 C = 0.006248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.615540 B = 3504.552098 C = 4480.145436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.074 3.926 3 Si 0.879 3.121 4 H -0.283 1.283 5 H -0.264 1.264 6 H -0.300 1.300 7 C -0.454 4.454 8 H 0.078 0.922 9 C 0.009 3.991 10 C 0.094 3.906 11 N -0.636 5.636 12 C 0.127 3.873 13 C -0.098 4.098 14 C 0.470 3.530 15 O -0.461 6.461 16 O -0.533 6.533 17 C -0.155 4.155 18 C 0.059 3.941 19 O -0.387 6.387 20 C 0.063 3.937 21 C -0.189 4.189 22 C -0.187 4.187 23 C -0.205 4.205 24 H 0.260 0.740 25 H 0.062 0.938 26 H 0.007 0.993 27 H 0.338 0.662 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.406 0.594 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.314 -4.430 -10.004 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.127 4.127 3 Si 0.708 3.292 4 H -0.210 1.210 5 H -0.188 1.188 6 H -0.228 1.228 7 C -0.492 4.492 8 H 0.096 0.904 9 C 0.008 3.992 10 C -0.034 4.034 11 N -0.268 5.268 12 C 0.034 3.966 13 C -0.136 4.136 14 C 0.310 3.690 15 O -0.345 6.345 16 O -0.346 6.346 17 C -0.193 4.193 18 C -0.018 4.018 19 O -0.306 6.306 20 C -0.014 4.014 21 C -0.228 4.228 22 C -0.225 4.225 23 C -0.242 4.242 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.025 0.975 27 H 0.159 0.841 28 H 0.122 0.878 29 H 0.114 0.886 30 H 0.264 0.736 31 H 0.128 0.872 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.898 -4.377 -10.055 14.773 hybrid contribution 0.597 1.179 0.355 1.368 sum 10.495 -3.198 -9.701 14.645 Atomic orbital electron populations 1.69918 1.06193 1.26437 1.51180 1.24931 0.94497 0.98532 0.94761 0.86930 0.80106 0.84074 0.78043 1.20998 1.18830 1.22774 1.20071 0.86333 0.94382 1.48405 0.90364 1.19475 0.94862 0.98511 0.86366 1.21756 0.92797 0.93135 0.95751 1.60394 1.60366 1.06101 0.99930 1.20702 0.90695 0.93472 0.91698 1.21388 0.89192 1.01223 1.01817 1.23049 0.91862 0.78114 0.75987 1.90735 1.64596 1.38110 1.41024 1.84477 1.28759 1.57518 1.63882 1.22524 1.04694 0.93457 0.98624 1.22630 0.80323 0.98494 1.00309 1.87885 1.20241 1.42006 1.80504 1.22490 0.98196 0.85123 0.95595 1.22936 0.98324 0.99408 1.02160 1.22889 1.01302 0.93961 1.04312 1.22946 1.01946 0.93720 1.05627 0.93030 0.92003 0.97472 0.84117 0.87787 0.88577 0.73624 0.87199 0.91736 0.89020 0.92294 0.89147 0.93016 0.90840 0.90263 0.89569 0.91511 0.91164 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.98 24.81 -169.99 -4.22 17.76 16 4 H -0.28 -6.99 7.00 56.52 0.40 -6.60 16 5 H -0.26 -6.17 6.23 56.52 0.35 -5.82 16 6 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 7 C -0.45 -12.55 9.14 -34.44 -0.31 -12.86 16 8 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 9 C 0.01 0.20 1.12 -155.66 -0.17 0.03 16 10 C 0.09 1.83 4.82 -3.83 -0.02 1.81 16 11 N -0.64 -11.55 4.68 -99.78 -0.47 -12.02 16 12 C 0.13 1.84 0.28 -131.42 -0.04 1.81 16 13 C -0.10 -1.40 4.73 -27.88 -0.13 -1.53 16 14 C 0.47 7.91 7.83 36.01 0.28 8.19 16 15 O -0.46 -9.39 13.69 -18.75 -0.26 -9.65 16 16 O -0.53 -7.70 13.42 -39.24 -0.53 -8.23 16 17 C -0.16 -2.16 4.67 -26.60 -0.12 -2.29 16 18 C 0.06 0.79 6.58 37.20 0.24 1.03 16 19 O -0.39 -5.34 10.77 -35.23 -0.38 -5.72 16 20 C 0.06 0.78 6.58 37.20 0.24 1.03 16 21 C -0.19 -2.32 4.58 -26.59 -0.12 -2.45 16 22 C -0.19 -3.70 9.92 -26.73 -0.27 -3.97 16 23 C -0.20 -4.30 7.15 -26.73 -0.19 -4.49 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.06 1.29 6.02 -51.92 -0.31 0.98 16 26 H 0.01 0.13 6.07 -51.93 -0.32 -0.19 16 27 H 0.34 6.10 5.45 -39.29 -0.21 5.88 16 28 H 0.10 1.53 6.25 -51.93 -0.32 1.21 16 29 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.41 4.49 9.10 45.56 0.41 4.91 16 31 H 0.11 1.78 5.49 -51.93 -0.28 1.50 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.84 6.66 -51.93 -0.35 0.50 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.69 6.98 -51.93 -0.36 0.33 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.98 6.19 -51.93 -0.32 0.65 16 39 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.09 1.96 6.28 -51.93 -0.33 1.63 16 LS Contribution 320.54 15.07 4.83 4.83 Total: -1.00 -32.85 320.54 -6.34 -39.18 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -5.39 Total: 12.57 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.70 Total: -11.66 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.31 Total: -39.08 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -1.16 Total: -23.60 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.22 Total: 17.76 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.85 -6.34 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.769 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds