Wall clock time and date at job start Tue Mar 31 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00144 * 2 1 4 4 H 1.48506 * 109.46903 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47316 * 299.99844 * 3 2 1 6 6 H 1.48499 * 109.47045 * 59.99923 * 3 2 1 7 7 C 1.37877 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00055 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00117 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47287 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47544 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47544 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47186 * 180.02562 * 12 11 10 14 14 O 1.21285 * 119.99936 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00347 * 180.02562 * 13 12 11 16 16 C 1.46495 * 120.00573 * 179.97438 * 15 13 12 17 17 H 1.09005 * 109.46990 * 325.00265 * 16 15 13 18 18 C 1.52997 * 109.47430 * 204.99724 * 16 15 13 19 19 C 1.50709 * 109.46995 * 65.00119 * 18 16 15 20 20 O 1.20826 * 119.99555 * 359.97438 * 19 18 16 21 21 O 1.34225 * 119.99954 * 179.97438 * 19 18 16 22 22 C 1.53003 * 109.47194 * 84.99642 * 16 15 13 23 23 C 1.53001 * 117.51964 * 231.28709 * 22 16 15 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 16 25 25 H 0.97006 * 120.00088 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.46986 * 60.00067 * 9 7 2 27 27 H 1.09003 * 109.46760 * 299.99834 * 9 7 2 28 28 H 1.09000 * 109.47004 * 59.99611 * 10 9 7 29 29 H 1.09000 * 109.47224 * 300.00267 * 10 9 7 30 30 H 1.09009 * 109.46903 * 59.99850 * 11 10 9 31 31 H 1.09000 * 109.47163 * 300.00408 * 11 10 9 32 32 H 1.08995 * 109.47186 * 60.00130 * 12 11 10 33 33 H 1.09005 * 109.46828 * 300.00180 * 12 11 10 34 34 H 0.97002 * 119.99812 * 359.97438 * 15 13 12 35 35 H 1.08998 * 109.47570 * 184.99672 * 18 16 15 36 36 H 1.08999 * 109.47120 * 305.00106 * 18 16 15 37 37 H 0.96705 * 117.00077 * 179.97438 * 21 19 18 38 38 H 1.09002 * 115.54973 * 85.58492 * 22 16 15 39 39 H 1.09001 * 117.49733 * 214.97413 * 23 22 16 40 40 H 1.08995 * 117.49577 * 359.97438 * 23 22 16 41 41 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 42 42 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9872 0.0001 12 6 2.4743 -6.1501 0.0008 13 6 1.7208 -7.4551 0.0008 14 8 0.5079 -7.4551 0.0008 15 7 2.3946 -8.6224 0.0018 16 6 1.6621 -9.8911 0.0024 17 1 0.7511 -9.7844 0.5914 18 6 2.5390 -10.9861 0.6130 19 6 2.7954 -10.6731 2.0648 20 8 2.3253 -9.6762 2.5599 21 8 3.5459 -11.5017 2.8076 22 6 1.2987 -10.2709 -1.4345 23 6 -0.1615 -10.6239 -1.7247 24 6 0.4181 -9.2979 -2.2212 25 1 -0.4850 0.8401 -0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8718 -3.6044 0.8894 29 1 2.8718 -3.6044 -0.8905 30 1 0.8531 -5.0452 -0.8897 31 1 0.8537 -5.0447 0.8903 32 1 3.1009 -6.0920 0.8907 33 1 3.1010 -6.0928 -0.8893 34 1 3.3646 -8.6225 0.0022 35 1 2.0297 -11.9464 0.5329 36 1 3.4877 -11.0322 0.0782 37 1 3.6827 -11.2588 3.7336 38 1 2.0668 -10.8131 -1.9861 39 1 -0.3540 -11.3985 -2.4671 40 1 -0.8634 -10.5862 -0.8917 41 1 0.0974 -8.3874 -1.7149 42 1 0.6069 -9.2000 -3.2903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064942.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:32 Heat of formation + Delta-G solvation = -132.539922 kcal Electronic energy + Delta-G solvation = -22010.841191 eV Core-core repulsion = 18569.707957 eV Total energy + Delta-G solvation = -3441.133234 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.86031 -39.74543 -37.55651 -36.46631 -34.83976 -34.48798 -32.58246 -31.50619 -29.52454 -26.22098 -25.07987 -22.56519 -22.32240 -21.72708 -20.59829 -20.28506 -19.88562 -18.37556 -17.00721 -16.92249 -16.40726 -16.14289 -16.01767 -15.67991 -15.13474 -14.55204 -14.41263 -13.68348 -13.56735 -13.34771 -13.05625 -12.54475 -12.29120 -12.20147 -11.87660 -11.81520 -11.62482 -11.52335 -11.44148 -10.95534 -10.94289 -10.55002 -10.45624 -10.44203 -10.40076 -10.34951 -9.66848 -9.55524 -9.16157 -9.03534 -8.92123 -8.27127 -5.91726 -3.93966 1.85368 2.58805 2.83037 3.03651 3.35533 3.42533 3.46697 3.75299 4.13270 4.50768 4.52067 4.61910 4.82747 4.88566 4.88980 4.97003 5.14930 5.16421 5.40867 5.43380 5.47043 5.52894 5.58529 5.82468 5.93700 5.97828 6.14259 6.21252 6.25919 6.37495 6.43168 6.62120 6.91259 7.09134 7.25837 7.50415 7.53687 7.78811 7.95363 8.10360 8.38832 8.52288 9.14057 9.69491 11.19673 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.002855 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.970268 B = 9803.625290 C =10610.922943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.102 4.102 12 C -0.138 4.138 13 C 0.522 3.478 14 O -0.532 6.532 15 N -0.726 5.726 16 C 0.186 3.814 17 H 0.098 0.902 18 C -0.119 4.119 19 C 0.470 3.530 20 O -0.496 6.496 21 O -0.522 6.522 22 C -0.176 4.176 23 C -0.172 4.172 24 C -0.176 4.176 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.395 0.605 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.411 0.589 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.705 -28.261 -0.402 29.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.140 4.140 12 C -0.178 4.178 13 C 0.311 3.689 14 O -0.409 6.409 15 N -0.378 5.378 16 C 0.081 3.919 17 H 0.116 0.884 18 C -0.157 4.157 19 C 0.311 3.689 20 O -0.382 6.382 21 O -0.334 6.334 22 C -0.195 4.195 23 C -0.209 4.209 24 C -0.213 4.213 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.229 0.771 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.271 0.729 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.141 0.859 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.473 -27.953 -0.660 28.700 hybrid contribution 1.119 0.970 0.607 1.600 sum 7.592 -26.983 -0.053 28.031 Atomic orbital electron populations 1.69988 1.06038 1.26342 1.51115 1.25044 0.94839 0.99218 0.95526 0.86561 0.80089 0.83970 0.77521 1.19788 1.21065 1.21073 1.21333 0.93012 0.91222 1.50137 0.92730 1.19099 0.94073 0.91277 0.97298 1.21647 0.99064 0.94089 0.99991 1.21434 0.97004 0.92658 1.02898 1.21778 1.00114 0.92166 1.03782 1.20931 0.88421 0.85378 0.74209 1.90621 1.14215 1.87489 1.48535 1.45996 1.09667 1.05215 1.76892 1.20230 0.95777 0.82059 0.93814 0.88387 1.21673 1.03494 1.02046 0.88442 1.23423 0.75008 0.80564 0.89884 1.90838 1.47290 1.26778 1.73292 1.84511 1.66695 1.53553 1.28668 1.22612 0.94537 1.05893 0.96489 1.22942 0.94753 0.99553 1.03660 1.23318 1.02363 0.95808 0.99794 0.93132 0.96589 0.96602 0.93557 0.93540 0.91838 0.91827 0.89311 0.89305 0.77097 0.86069 0.87046 0.72949 0.87676 0.88901 0.88640 0.85949 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.29 55.43 0.74 -27.19 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.52 -15.23 9.11 -34.44 -0.31 -15.55 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.35 5.15 -26.73 -0.14 -2.49 16 11 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.14 -1.95 5.70 -27.89 -0.16 -2.11 16 13 C 0.52 7.47 7.16 -10.99 -0.08 7.39 16 14 O -0.53 -9.56 13.01 5.55 0.07 -9.48 16 15 N -0.73 -7.45 4.20 -53.81 -0.23 -7.68 16 16 C 0.19 1.69 1.83 -67.93 -0.12 1.56 16 17 H 0.10 1.20 7.15 -51.93 -0.37 0.83 16 18 C -0.12 -0.67 5.34 -27.88 -0.15 -0.82 16 19 C 0.47 3.79 8.19 36.01 0.29 4.09 16 20 O -0.50 -6.20 16.11 -18.75 -0.30 -6.50 16 21 O -0.52 -3.03 13.42 -39.24 -0.53 -3.56 16 22 C -0.18 -1.46 5.36 -90.61 -0.49 -1.94 16 23 C -0.17 -1.51 10.18 -26.73 -0.27 -1.78 16 24 C -0.18 -1.92 9.73 -26.73 -0.26 -2.18 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.24 8.10 -51.92 -0.42 0.82 16 31 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.40 3.01 8.60 -40.82 -0.35 2.65 16 35 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.41 1.03 9.10 45.56 0.41 1.44 16 38 H 0.11 0.66 8.11 -51.93 -0.42 0.24 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 41 H 0.12 1.76 5.02 -51.93 -0.26 1.50 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -36.89 353.29 -8.00 -44.89 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.02 Total: 0.93 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -2.04 Total: -13.93 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.51 Total: -34.87 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.76 Total: -19.54 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.89 -8.00 -44.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064942.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.652 kcal (2) G-P(sol) polarization free energy of solvation -36.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds