Wall clock time and date at job start Tue Mar 31 2020 06:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99665 * 2 1 4 4 H 1.48504 * 109.47242 * 269.99997 * 3 2 1 5 5 H 1.48499 * 109.47357 * 29.99811 * 3 2 1 6 6 H 1.48502 * 109.46900 * 150.00179 * 3 2 1 7 7 C 1.37875 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00039 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99845 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46975 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47190 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47257 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47084 * 179.97438 * 12 11 10 14 14 O 1.21285 * 120.00496 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00093 * 179.97438 * 13 12 11 16 16 C 1.46495 * 120.00635 * 180.02562 * 15 13 12 17 17 H 1.09005 * 109.46816 * 35.00200 * 16 15 13 18 18 C 1.52997 * 109.47623 * 155.00223 * 16 15 13 19 19 C 1.50704 * 109.47000 * 295.00326 * 18 16 15 20 20 O 1.20826 * 120.00155 * 359.97438 * 19 18 16 21 21 O 1.34231 * 120.00090 * 179.97438 * 19 18 16 22 22 C 1.53003 * 109.47352 * 275.00684 * 16 15 13 23 23 C 1.53000 * 117.49792 * 59.99399 * 22 16 15 24 24 C 1.53002 * 60.02940 * 107.48056 * 23 22 16 25 25 H 0.96997 * 120.00089 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47477 * 60.00293 * 9 7 2 27 27 H 1.09003 * 109.47238 * 299.99613 * 9 7 2 28 28 H 1.08998 * 109.47455 * 59.99966 * 10 9 7 29 29 H 1.09003 * 109.46624 * 299.99747 * 10 9 7 30 30 H 1.08998 * 109.47061 * 59.99588 * 11 10 9 31 31 H 1.08996 * 109.47233 * 299.99696 * 11 10 9 32 32 H 1.09006 * 109.46486 * 59.99971 * 12 11 10 33 33 H 1.08996 * 109.47069 * 300.00187 * 12 11 10 34 34 H 0.97006 * 119.99748 * 0.02562 * 15 13 12 35 35 H 1.09001 * 109.47093 * 54.99778 * 18 16 15 36 36 H 1.08998 * 109.47423 * 175.00464 * 18 16 15 37 37 H 0.96695 * 116.99886 * 180.02562 * 21 19 18 38 38 H 1.08999 * 115.54778 * 274.32762 * 22 16 15 39 39 H 1.09002 * 117.49833 * 214.98161 * 23 22 16 40 40 H 1.09002 * 117.49953 * 359.97438 * 23 22 16 41 41 H 1.09000 * 117.49996 * 107.50493 * 24 23 22 42 42 H 1.08999 * 117.49664 * 252.51862 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4804 -4.9870 0.0033 12 6 2.4747 -6.1500 0.0037 13 6 1.7212 -7.4550 0.0048 14 8 0.5083 -7.4551 0.0048 15 7 2.3950 -8.6223 0.0048 16 6 1.6626 -9.8910 0.0054 17 1 0.7517 -9.7849 -0.5838 18 6 2.5396 -10.9865 -0.6042 19 6 2.7960 -10.6748 -2.0562 20 8 2.3252 -9.6789 -2.5526 21 8 3.5474 -11.5035 -2.7981 22 6 1.2992 -10.2695 1.4426 23 6 0.4202 -9.2949 2.2291 24 6 -0.1623 -10.6199 1.7331 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6248 -2.5563 0.8920 28 1 2.8721 -3.6035 0.8926 29 1 2.8720 -3.6050 -0.8874 30 1 0.8540 -5.0453 -0.8868 31 1 0.8535 -5.0443 0.8931 32 1 3.1013 -6.0918 0.8937 33 1 3.1013 -6.0926 -0.8863 34 1 3.3651 -8.6223 0.0045 35 1 3.4883 -11.0321 -0.0695 36 1 2.0303 -11.9468 -0.5233 37 1 3.6842 -11.2614 -3.7242 38 1 2.0667 -10.8125 1.9942 39 1 0.6092 -9.1970 3.2981 40 1 0.1013 -8.3838 1.7227 41 1 -0.3566 -11.3936 2.4758 42 1 -0.8643 -10.5806 0.9002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:35 Heat of formation + Delta-G solvation = -132.496127 kcal Electronic energy + Delta-G solvation = -22010.942529 eV Core-core repulsion = 18569.811194 eV Total energy + Delta-G solvation = -3441.131335 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86014 -39.74538 -37.55313 -36.46563 -34.83877 -34.48690 -32.58076 -31.50620 -29.52359 -26.22083 -25.07955 -22.56360 -22.32258 -21.72670 -20.59797 -20.28466 -19.88556 -18.37558 -17.00724 -16.92194 -16.40671 -16.14057 -16.01663 -15.68001 -15.13478 -14.55168 -14.41545 -13.68407 -13.56712 -13.34747 -13.05579 -12.53972 -12.29135 -12.20138 -11.87673 -11.81518 -11.62227 -11.52474 -11.44209 -10.94900 -10.93446 -10.54593 -10.48143 -10.43654 -10.40213 -10.34761 -9.66828 -9.55314 -9.16124 -9.03526 -8.93129 -8.26633 -5.91507 -3.93862 1.85354 2.58831 2.83013 3.03604 3.36538 3.42342 3.45691 3.75275 4.13216 4.50823 4.52112 4.61916 4.82660 4.88570 4.89049 4.96998 5.14937 5.16468 5.40854 5.43435 5.47054 5.52942 5.58567 5.82504 5.93711 5.97844 6.14301 6.21281 6.25940 6.37493 6.43162 6.62127 6.91295 7.09147 7.25828 7.50392 7.53674 7.78602 7.95445 8.10519 8.38809 8.52357 9.13975 9.69524 11.19859 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023543 B = 0.002856 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.037292 B = 9803.091867 C =10610.247789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.102 4.102 12 C -0.138 4.138 13 C 0.522 3.478 14 O -0.532 6.532 15 N -0.726 5.726 16 C 0.186 3.814 17 H 0.098 0.902 18 C -0.118 4.118 19 C 0.470 3.530 20 O -0.496 6.496 21 O -0.522 6.522 22 C -0.176 4.176 23 C -0.176 4.176 24 C -0.172 4.172 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.395 0.605 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.411 0.589 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.122 0.878 41 H 0.093 0.907 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.696 -28.246 0.430 29.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.140 4.140 12 C -0.178 4.178 13 C 0.311 3.689 14 O -0.409 6.409 15 N -0.378 5.378 16 C 0.081 3.919 17 H 0.116 0.884 18 C -0.157 4.157 19 C 0.311 3.689 20 O -0.382 6.382 21 O -0.334 6.334 22 C -0.195 4.195 23 C -0.213 4.213 24 C -0.209 4.209 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.229 0.771 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.270 0.730 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.140 0.860 41 H 0.111 0.889 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.459 -27.935 0.694 28.681 hybrid contribution 1.132 0.966 -0.617 1.611 sum 7.591 -26.970 0.077 28.018 Atomic orbital electron populations 1.69981 1.06035 1.26458 1.51028 1.25044 0.94840 0.99205 0.95513 0.86614 0.79822 0.83635 0.78031 1.20730 1.21266 1.19930 1.21293 0.92978 0.91240 1.50269 0.92781 1.19093 0.94064 0.91257 0.97293 1.21649 0.99067 0.94091 0.99987 1.21434 0.97004 0.92658 1.02898 1.21779 1.00115 0.92165 1.03782 1.20931 0.88420 0.85379 0.74209 1.90621 1.14215 1.87489 1.48533 1.45999 1.09667 1.05216 1.76892 1.20231 0.95778 0.82056 0.93819 0.88386 1.21673 1.03493 1.02048 0.88440 1.23423 0.75014 0.80545 0.89896 1.90838 1.47294 1.26827 1.73237 1.84511 1.66653 1.53586 1.28680 1.22622 0.94538 1.05892 0.96479 1.23317 1.02359 0.95810 0.99797 1.22953 0.94713 0.99581 1.03661 0.93074 0.96601 0.96599 0.93537 0.93560 0.91826 0.91838 0.89304 0.89311 0.77097 0.87046 0.86066 0.72953 0.87671 0.89276 0.85954 0.88899 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.29 55.43 0.74 -27.21 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.26 9.11 -34.44 -0.31 -15.58 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.35 5.15 -26.73 -0.14 -2.49 16 11 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.14 -1.95 5.70 -27.88 -0.16 -2.11 16 13 C 0.52 7.47 7.16 -10.99 -0.08 7.39 16 14 O -0.53 -9.56 13.01 5.55 0.07 -9.48 16 15 N -0.73 -7.45 4.20 -53.81 -0.23 -7.68 16 16 C 0.19 1.69 1.83 -67.93 -0.12 1.56 16 17 H 0.10 1.20 7.15 -51.93 -0.37 0.83 16 18 C -0.12 -0.67 5.34 -27.88 -0.15 -0.82 16 19 C 0.47 3.79 8.19 36.01 0.29 4.09 16 20 O -0.50 -6.20 16.11 -18.75 -0.30 -6.50 16 21 O -0.52 -3.03 13.42 -39.26 -0.53 -3.56 16 22 C -0.18 -1.46 5.36 -90.58 -0.49 -1.94 16 23 C -0.18 -1.92 9.73 -26.73 -0.26 -2.18 16 24 C -0.17 -1.51 10.18 -26.69 -0.27 -1.78 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 31 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.40 3.01 8.60 -40.82 -0.35 2.65 16 35 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.41 1.03 9.10 45.56 0.41 1.44 16 38 H 0.11 0.66 8.11 -51.93 -0.42 0.24 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.12 1.76 5.02 -51.93 -0.26 1.50 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.90 8.05 -51.93 -0.42 0.49 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -36.87 353.29 -8.00 -44.87 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.02 Total: 0.97 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -2.04 Total: -13.94 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.51 Total: -34.89 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.76 Total: -19.54 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.87 -8.00 -44.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.623 kcal (2) G-P(sol) polarization free energy of solvation -36.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds