Wall clock time and date at job start Tue Mar 31 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48506 * 109.47107 * 240.00372 * 3 2 1 5 5 H 1.48500 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00197 * 3 2 1 7 7 C 1.37876 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99882 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47452 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99781 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99622 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99622 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 14 12 17 17 H 1.09008 * 109.47017 * 54.99771 * 16 15 14 18 18 C 1.52994 * 109.47404 * 174.99693 * 16 15 14 19 19 C 1.53003 * 109.47265 * 184.99783 * 18 16 15 20 20 C 1.52995 * 117.50132 * 243.62279 * 19 18 16 21 21 C 1.52995 * 60.00233 * 252.51586 * 20 19 18 22 22 C 1.50705 * 109.47135 * 295.00226 * 16 15 14 23 23 O 1.20829 * 120.00036 * 359.97438 * 22 16 15 24 24 O 1.34228 * 119.99776 * 180.02562 * 22 16 15 25 25 H 0.96996 * 119.99885 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47789 * 60.00124 * 9 7 2 27 27 H 1.09002 * 109.47002 * 299.99787 * 9 7 2 28 28 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 29 29 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 30 30 H 1.09001 * 109.46832 * 59.99801 * 11 10 9 31 31 H 1.09002 * 109.47153 * 299.99992 * 11 10 9 32 32 H 0.96996 * 120.00772 * 359.97438 * 14 12 11 33 33 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 34 34 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 35 35 H 1.09001 * 109.47698 * 305.00111 * 18 16 15 36 36 H 1.09009 * 109.47010 * 65.00116 * 18 16 15 37 37 H 1.08994 * 115.54949 * 29.33338 * 19 18 16 38 38 H 1.09002 * 117.50133 * 359.97438 * 20 19 18 39 39 H 1.08997 * 117.49973 * 145.02137 * 20 19 18 40 40 H 1.09007 * 117.49593 * 252.51523 * 21 20 19 41 41 H 1.08997 * 117.50530 * 107.49059 * 21 20 19 42 42 H 0.96705 * 116.99837 * 179.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4597 -6.1325 -0.0005 13 8 3.6521 -5.9108 -0.0019 14 7 2.0104 -7.4031 -0.0006 15 6 2.9625 -8.5167 -0.0018 16 6 2.1976 -9.8417 -0.0010 17 1 1.5044 -9.8615 -0.8421 18 6 3.1868 -11.0018 -0.1281 19 6 2.4164 -12.3178 -0.2526 20 6 2.5940 -13.3488 0.8637 21 6 3.2275 -13.5898 -0.5079 22 6 1.4278 -9.9766 1.2875 23 8 1.4855 -9.1028 2.1201 24 8 0.6789 -11.0680 1.5108 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8902 27 1 0.6248 -2.5570 0.8897 28 1 2.8720 -3.6042 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.8534 -5.0450 -0.8896 31 1 0.8540 -5.0446 0.8903 32 1 1.0568 -7.5805 0.0001 33 1 3.5884 -8.4586 -0.8923 34 1 3.5899 -8.4592 0.8877 35 1 3.8047 -10.8572 -1.0144 36 1 3.8228 -11.0355 0.7566 37 1 1.4341 -12.2451 -0.7194 38 1 3.2600 -13.0898 1.6868 39 1 1.7283 -13.9545 1.1317 40 1 2.7785 -14.3540 -1.1424 41 1 4.3099 -13.4891 -0.5871 42 1 0.2036 -11.1097 2.3519 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:14 Heat of formation + Delta-G solvation = -133.195138 kcal Electronic energy + Delta-G solvation = -21703.249190 eV Core-core repulsion = 18262.087544 eV Total energy + Delta-G solvation = -3441.161646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.91197 -39.27550 -38.01990 -36.57879 -35.32594 -34.09572 -32.74733 -31.89792 -28.27512 -26.61717 -24.96775 -23.52451 -22.72679 -21.24220 -20.89065 -20.39023 -19.60563 -18.43252 -17.31866 -16.74958 -16.49644 -15.95432 -15.56657 -15.54519 -15.24569 -14.60914 -14.38322 -14.18139 -13.61483 -13.38652 -12.98062 -12.71196 -12.58491 -12.20250 -12.08131 -11.90446 -11.79019 -11.72015 -11.53798 -11.25125 -10.82278 -10.73970 -10.63731 -10.55788 -10.50447 -10.27043 -9.63195 -9.61189 -9.21140 -8.97563 -8.96111 -8.27353 -5.93289 -3.94501 1.89739 2.66558 3.01830 3.23319 3.39738 3.42764 3.43976 3.47066 4.03042 4.23606 4.42665 4.53051 4.55435 4.65015 4.81028 4.99720 5.08218 5.21407 5.25769 5.28681 5.37014 5.42514 5.52475 5.53892 5.66691 5.74275 5.79562 5.81646 5.87188 6.20680 6.33050 6.48866 6.79985 7.00091 7.22753 7.59754 7.63462 7.76177 7.89665 8.07790 8.51299 8.53189 9.12416 9.69020 11.18224 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.046424 B = 0.002411 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.990427 B =11609.304756 C =11936.455968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.516 3.484 13 O -0.539 6.539 14 N -0.734 5.734 15 C 0.133 3.867 16 C -0.089 4.089 17 H 0.117 0.883 18 C -0.079 4.079 19 C -0.145 4.145 20 C -0.170 4.170 21 C -0.185 4.185 22 C 0.477 3.523 23 O -0.500 6.500 24 O -0.509 6.509 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.397 0.603 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.133 -30.376 -0.588 30.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.178 4.178 12 C 0.304 3.696 13 O -0.415 6.415 14 N -0.388 5.388 15 C 0.009 3.991 16 C -0.108 4.108 17 H 0.134 0.866 18 C -0.117 4.117 19 C -0.163 4.163 20 C -0.207 4.207 21 C -0.222 4.222 22 C 0.318 3.682 23 O -0.387 6.387 24 O -0.320 6.320 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.230 0.770 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.099 -29.815 -0.725 29.898 hybrid contribution -0.493 0.707 0.644 1.076 sum 1.605 -29.108 -0.080 29.153 Atomic orbital electron populations 1.69958 1.06022 1.26591 1.51233 1.25027 0.94870 0.99236 0.95449 0.86645 0.79553 0.83065 0.78669 1.20236 1.21368 1.20243 1.21245 0.93159 0.91039 1.50108 0.92626 1.19131 0.93988 0.91464 0.97101 1.21441 0.98620 0.91537 1.01666 1.21834 0.98170 0.94096 1.03700 1.21195 0.90360 0.83552 0.74451 1.90669 1.17330 1.84702 1.48834 1.45979 1.09619 1.05732 1.77434 1.21165 0.91857 0.82643 1.03442 1.21410 0.98028 0.97226 0.94160 0.86551 1.21125 0.96264 0.90585 1.03760 1.22213 1.00453 0.89641 1.04020 1.22937 1.02875 1.02876 0.92058 1.23007 0.99591 0.99647 0.99926 1.23341 0.77060 0.78757 0.89012 1.90822 1.60913 1.40688 1.46265 1.84586 1.59066 1.43541 1.44821 0.93055 0.96619 0.96624 0.92716 0.92709 0.89450 0.89371 0.76960 0.89997 0.90701 0.89283 0.90817 0.87205 0.89213 0.88857 0.88832 0.88839 0.73473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -15.31 9.11 -34.44 -0.31 -15.62 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.09 -2.13 4.44 -26.73 -0.12 -2.25 16 11 C -0.14 -2.42 5.70 -27.88 -0.16 -2.58 16 12 C 0.52 8.77 7.83 -10.99 -0.09 8.69 16 13 O -0.54 -11.21 15.98 5.56 0.09 -11.12 16 14 N -0.73 -9.20 4.81 -60.29 -0.29 -9.49 16 15 C 0.13 1.38 4.63 -4.04 -0.02 1.36 16 16 C -0.09 -0.62 2.33 -91.77 -0.21 -0.83 16 17 H 0.12 0.61 8.14 -51.92 -0.42 0.19 16 18 C -0.08 -0.45 4.95 -26.73 -0.13 -0.58 16 19 C -0.15 -0.78 4.12 -90.62 -0.37 -1.15 16 20 C -0.17 -0.93 9.67 -26.74 -0.26 -1.19 16 21 C -0.18 -0.94 10.25 -26.73 -0.27 -1.22 16 22 C 0.48 4.03 7.28 36.01 0.26 4.29 16 23 O -0.50 -6.30 16.05 -18.75 -0.30 -6.60 16 24 O -0.51 -2.91 11.30 -39.25 -0.44 -3.35 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 29 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.40 4.09 8.16 -40.82 -0.33 3.76 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.93 7.95 -51.93 -0.41 0.52 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.46 7.88 -51.92 -0.41 0.05 16 37 H 0.11 0.59 8.02 -51.93 -0.42 0.17 16 38 H 0.09 0.51 8.03 -51.93 -0.42 0.09 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.41 1.07 9.10 45.56 0.41 1.48 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -36.55 355.84 -7.97 -44.52 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.18 Total: -0.73 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.92 Total: -9.15 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.45 Total: -36.32 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.66 Total: -21.08 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.55 -7.97 -44.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.672 kcal (2) G-P(sol) polarization free energy of solvation -36.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds