Wall clock time and date at job start Tue Mar 31 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00038 * 2 1 4 4 H 1.48502 * 109.47459 * 270.00041 * 3 2 1 5 5 H 1.48504 * 109.47440 * 30.00116 * 3 2 1 6 6 H 1.48501 * 109.47218 * 150.00095 * 3 2 1 7 7 C 1.37877 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99663 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00216 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47283 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47533 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47265 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00369 * 359.97438 * 12 11 10 14 14 N 1.34786 * 119.99676 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99692 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47014 * 180.02562 * 15 14 12 17 17 H 1.08999 * 109.47398 * 305.00021 * 16 15 14 18 18 C 1.53004 * 109.47303 * 184.99778 * 16 15 14 19 19 C 1.50700 * 109.46795 * 66.30816 * 18 16 15 20 20 O 1.20829 * 120.00230 * 6.50794 * 19 18 16 21 21 O 1.34233 * 120.00010 * 186.51559 * 19 18 16 22 22 C 1.53000 * 109.47130 * 64.99926 * 16 15 14 23 23 C 1.53005 * 117.49932 * 255.11742 * 22 16 15 24 24 C 1.53001 * 117.49906 * 186.45679 * 22 16 15 25 25 H 0.97001 * 120.00105 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47100 * 59.99728 * 9 7 2 27 27 H 1.08999 * 109.47265 * 300.00298 * 9 7 2 28 28 H 1.09003 * 109.47320 * 59.99808 * 10 9 7 29 29 H 1.08999 * 109.47169 * 300.00302 * 10 9 7 30 30 H 1.09003 * 109.46990 * 59.99587 * 11 10 9 31 31 H 1.08999 * 109.47125 * 300.00311 * 11 10 9 32 32 H 0.96995 * 120.00164 * 359.97438 * 14 12 11 33 33 H 1.09002 * 109.46959 * 59.99753 * 15 14 12 34 34 H 1.08999 * 109.47295 * 300.00297 * 15 14 12 35 35 H 1.08995 * 109.46941 * 306.31152 * 18 16 15 36 36 H 1.08999 * 109.46948 * 186.30294 * 18 16 15 37 37 H 0.96703 * 116.99693 * 179.97438 * 21 19 18 38 38 H 1.09002 * 115.54765 * 40.78769 * 22 16 15 39 39 H 1.08997 * 117.49738 * 0.02562 * 23 22 16 40 40 H 1.09000 * 117.49458 * 145.02300 * 23 22 16 41 41 H 1.09002 * 117.49838 * 214.98299 * 24 22 16 42 42 H 1.08996 * 117.49842 * 359.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4594 -6.1325 -0.0018 13 8 3.6518 -5.9110 -0.0022 14 7 2.0101 -7.4033 -0.0019 15 6 2.9620 -8.5168 -0.0020 16 6 2.1970 -9.8418 -0.0027 17 1 1.5046 -9.8620 0.8388 18 6 3.1865 -11.0021 0.1229 19 6 3.8459 -10.9554 1.4771 20 8 3.4720 -10.1577 2.3040 21 8 4.8488 -11.8000 1.7647 22 6 1.4146 -9.9781 -1.3104 23 6 -0.0983 -9.7561 -1.2549 24 6 0.4621 -11.1682 -1.4430 25 1 -0.4850 0.8400 -0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6044 0.8894 29 1 2.8718 -3.6043 -0.8905 30 1 0.8537 -5.0446 -0.8914 31 1 0.8531 -5.0451 0.8885 32 1 1.0564 -7.5805 -0.0012 33 1 3.5887 -8.4591 0.8880 34 1 3.5888 -8.4590 -0.8919 35 1 3.9460 -10.9175 -0.6542 36 1 2.6546 -11.9468 0.0101 37 1 5.2408 -11.7321 2.6461 38 1 1.9388 -9.6506 -2.2083 39 1 -0.5360 -9.5125 -0.2869 40 1 -0.5694 -9.2829 -2.1165 41 1 0.3594 -11.6233 -2.4281 42 1 0.3933 -11.8541 -0.5987 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:29 Heat of formation + Delta-G solvation = -136.637496 kcal Electronic energy + Delta-G solvation = -21786.508035 eV Core-core repulsion = 18345.197117 eV Total energy + Delta-G solvation = -3441.310918 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83332 -39.47726 -38.29835 -36.49072 -34.80724 -34.07396 -32.72763 -31.91584 -28.54661 -27.08525 -24.40933 -23.19991 -22.80996 -21.86480 -20.58875 -20.24031 -19.52998 -18.40282 -17.07015 -16.99538 -16.47137 -16.01451 -15.88445 -15.48219 -15.13743 -14.76364 -14.38375 -13.75307 -13.65686 -13.51898 -13.16552 -12.70286 -12.57446 -12.21329 -11.97719 -11.89460 -11.73965 -11.63530 -11.41615 -11.22492 -10.91074 -10.76290 -10.56434 -10.54015 -10.49585 -10.42662 -9.61489 -9.60844 -9.20725 -8.96194 -8.87605 -8.28001 -5.93871 -3.94960 1.85333 2.61548 3.04303 3.32898 3.37536 3.42091 3.43232 3.48594 4.15153 4.34226 4.39553 4.52888 4.61040 4.68442 4.83949 5.00421 5.11292 5.16383 5.23988 5.29019 5.34051 5.42145 5.54851 5.68661 5.75266 5.76526 5.80864 5.83416 5.92970 6.18136 6.34026 6.58657 6.79846 7.00317 7.22770 7.52796 7.71463 7.76579 7.89363 8.07444 8.51571 8.57370 9.12267 9.68727 11.17722 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002755 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.104920 B =10159.458688 C =10976.746286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.512 3.488 13 O -0.540 6.540 14 N -0.734 5.734 15 C 0.123 3.877 16 C -0.060 4.060 17 H 0.091 0.909 18 C -0.104 4.104 19 C 0.474 3.526 20 O -0.506 6.506 21 O -0.520 6.520 22 C -0.151 4.151 23 C -0.176 4.176 24 C -0.180 4.180 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.399 0.601 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.411 0.589 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 -29.028 -1.310 29.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.178 4.178 12 C 0.300 3.700 13 O -0.417 6.417 14 N -0.387 5.387 15 C -0.001 4.001 16 C -0.079 4.079 17 H 0.109 0.891 18 C -0.142 4.142 19 C 0.316 3.684 20 O -0.394 6.394 21 O -0.332 6.332 22 C -0.170 4.170 23 C -0.213 4.213 24 C -0.217 4.217 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.233 0.767 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.270 0.730 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.267 -28.545 -1.467 28.672 hybrid contribution 0.175 0.803 0.577 1.004 sum 2.442 -27.742 -0.889 27.863 Atomic orbital electron populations 1.69968 1.06028 1.26484 1.51344 1.25023 0.94858 0.99233 0.95445 0.86592 0.79911 0.83437 0.78074 1.20697 1.21279 1.19841 1.21289 0.93205 0.91051 1.49965 0.92586 1.19131 0.93981 0.91470 0.97096 1.21437 0.98615 0.91581 1.01650 1.21832 0.98161 0.94154 1.03661 1.21237 0.90351 0.83737 0.74707 1.90667 1.17400 1.84770 1.48829 1.46003 1.09917 1.05599 1.77201 1.21374 0.92019 0.84194 1.02509 1.20853 0.96589 0.93137 0.97304 0.89105 1.21321 0.99440 1.01573 0.91874 1.23543 0.77267 0.77075 0.90551 1.90785 1.62075 1.36719 1.49772 1.84520 1.48618 1.58733 1.41333 1.22306 0.92226 1.03871 0.98557 1.23075 0.95141 0.99357 1.03723 1.22976 1.04212 0.91330 1.03133 0.93108 0.96622 0.96615 0.92741 0.92757 0.89440 0.89444 0.76730 0.90776 0.91836 0.87168 0.86881 0.72967 0.87110 0.88470 0.88288 0.88583 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.79 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -15.28 9.11 -34.44 -0.31 -15.60 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.09 -2.13 4.44 -26.74 -0.12 -2.25 16 11 C -0.14 -2.40 5.70 -27.88 -0.16 -2.56 16 12 C 0.51 8.75 7.83 -10.98 -0.09 8.66 16 13 O -0.54 -11.46 15.98 5.56 0.09 -11.37 16 14 N -0.73 -9.27 5.35 -60.30 -0.32 -9.59 16 15 C 0.12 1.39 4.87 -4.04 -0.02 1.37 16 16 C -0.06 -0.45 1.63 -90.62 -0.15 -0.60 16 17 H 0.09 0.76 7.63 -51.93 -0.40 0.36 16 18 C -0.10 -0.61 5.24 -27.88 -0.15 -0.76 16 19 C 0.47 3.92 7.88 36.01 0.28 4.21 16 20 O -0.51 -6.11 15.10 -18.75 -0.28 -6.39 16 21 O -0.52 -3.26 13.42 -39.26 -0.53 -3.79 16 22 C -0.15 -0.95 4.65 -90.62 -0.42 -1.38 16 23 C -0.18 -1.08 9.64 -26.69 -0.26 -1.34 16 24 C -0.18 -0.92 9.75 -26.69 -0.26 -1.18 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 29 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.40 4.00 7.73 -40.82 -0.32 3.69 16 33 H 0.07 1.03 6.24 -51.93 -0.32 0.71 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.11 0.43 7.56 -51.93 -0.39 0.04 16 37 H 0.41 1.14 9.10 45.56 0.41 1.56 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.58 8.09 -51.93 -0.42 0.16 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.43 8.00 -51.93 -0.42 0.01 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -36.95 355.06 -7.90 -44.84 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.04 Total: -0.13 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -1.88 Total: -9.49 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.41 Total: -36.38 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.72 Total: -21.55 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.95 -7.90 -44.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.795 kcal (2) G-P(sol) polarization free energy of solvation -36.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds