Wall clock time and date at job start Tue Mar 31 2020 05:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00333 * 2 1 4 4 H 1.48496 * 109.47211 * 270.00394 * 3 2 1 5 5 H 1.48505 * 109.46952 * 30.00060 * 3 2 1 6 6 H 1.48507 * 109.47358 * 150.00082 * 3 2 1 7 7 C 1.37885 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99460 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00175 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47297 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00084 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00236 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99689 * 179.97438 * 11 10 9 14 14 O 1.45204 * 109.46596 * 180.02562 * 13 11 10 15 15 C 1.34229 * 116.99360 * 180.02562 * 14 13 11 16 16 O 1.20822 * 120.00838 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99720 * 179.97438 * 15 14 13 18 18 C 1.53003 * 109.47328 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.47126 * 180.02562 * 18 17 15 20 20 C 1.54961 * 110.92578 * 71.54077 * 19 18 17 21 21 C 1.54270 * 104.16191 * 156.29427 * 20 19 18 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 0.96999 * 120.00105 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.47225 * 59.99798 * 9 7 2 26 26 H 1.09007 * 109.46990 * 300.00110 * 9 7 2 27 27 H 0.97009 * 119.99853 * 0.02562 * 10 9 7 28 28 H 1.08998 * 109.46840 * 60.00523 * 13 11 10 29 29 H 1.08994 * 109.47483 * 300.00099 * 13 11 10 30 30 H 1.09001 * 109.47076 * 60.00556 * 17 15 14 31 31 H 1.09000 * 109.47029 * 300.00108 * 17 15 14 32 32 H 1.08995 * 109.46922 * 60.00027 * 18 17 15 33 33 H 1.09000 * 109.47141 * 300.00024 * 18 17 15 34 34 H 1.09001 * 110.67554 * 308.23161 * 19 18 17 35 35 H 1.08997 * 110.47708 * 37.64024 * 20 19 18 36 36 H 1.09002 * 110.53308 * 274.97416 * 20 19 18 37 37 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 38 38 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 39 39 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 40 40 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 41 41 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 42 42 H 1.09000 * 110.48806 * 264.79985 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 5.3249 -2.8216 -0.0020 12 8 6.1131 -1.8998 -0.0025 13 6 5.8272 -4.2425 -0.0013 14 8 7.2792 -4.2424 -0.0020 15 6 7.8885 -5.4385 -0.0020 16 8 7.2305 -6.4518 -0.0019 17 6 9.3935 -5.5174 -0.0033 18 6 9.8273 -6.9846 -0.0037 19 6 11.3551 -7.0647 -0.0043 20 6 11.9324 -6.6362 1.3685 21 6 13.3124 -7.3231 1.4286 22 6 13.2463 -8.5291 0.4754 23 6 11.8278 -8.5343 -0.1310 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6805 0.8887 26 1 3.8745 -0.6801 -0.8912 27 1 3.3695 -3.3127 -0.0010 28 1 5.4631 -4.7569 -0.8906 29 1 5.4647 -4.7556 0.8894 30 1 9.7840 -5.0230 0.8862 31 1 9.7824 -5.0236 -0.8938 32 1 9.4368 -7.4787 -0.8933 33 1 9.4383 -7.4788 0.8866 34 1 11.7722 -6.4545 -0.8055 35 1 11.2943 -6.9907 2.1779 36 1 12.0431 -5.5528 1.4153 37 1 13.5175 -7.6608 2.4445 38 1 14.0885 -6.6310 1.1018 39 1 13.9896 -8.4220 -0.3145 40 1 13.4200 -9.4522 1.0285 41 1 11.8616 -8.8353 -1.1780 42 1 11.1735 -9.1977 0.4347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060572797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:14 Heat of formation + Delta-G solvation = -155.181852 kcal Electronic energy + Delta-G solvation = -21268.622729 eV Core-core repulsion = 17826.507667 eV Total energy + Delta-G solvation = -3442.115062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.67694 -39.02162 -38.61353 -36.47934 -34.38644 -33.66966 -32.44376 -29.83857 -29.10663 -28.56593 -27.02441 -24.07759 -22.16764 -20.99403 -20.53067 -20.18653 -20.11729 -17.83576 -17.53271 -16.91717 -16.50754 -16.19525 -15.71962 -15.23378 -15.12464 -14.91170 -14.35103 -14.06949 -13.74356 -13.54206 -13.17016 -12.99125 -12.64937 -12.41761 -12.27772 -12.06592 -11.75966 -11.57080 -11.43862 -11.23277 -11.08336 -10.93771 -10.85463 -10.79550 -10.78128 -10.71359 -10.59450 -10.01290 -9.55571 -9.35506 -8.83022 -8.28307 -6.25299 -4.28434 2.09237 2.37919 3.01858 3.24481 3.31333 3.39134 3.85205 4.14703 4.24936 4.29904 4.33995 4.58160 4.72079 4.79921 5.00723 5.06578 5.09321 5.12466 5.16743 5.17588 5.21739 5.24557 5.26133 5.31362 5.39787 5.50400 5.59119 5.70165 5.75075 5.79837 5.88337 6.00160 6.08503 6.31993 6.71903 6.99547 7.08218 7.30493 7.62928 8.03768 8.40055 8.66831 8.78681 9.33698 10.86444 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.051151 B = 0.002235 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.268766 B =12524.673262 C =12913.340583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.700 5.700 11 C 0.502 3.498 12 O -0.537 6.537 13 C 0.049 3.951 14 O -0.331 6.331 15 C 0.459 3.541 16 O -0.512 6.512 17 C -0.113 4.113 18 C -0.100 4.100 19 C -0.094 4.094 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.120 4.120 24 H 0.268 0.732 25 H 0.028 0.972 26 H 0.023 0.977 27 H 0.399 0.601 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.107 -16.286 0.768 29.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.100 3.900 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.415 6.415 13 C -0.029 4.029 14 O -0.246 6.246 15 C 0.302 3.698 16 O -0.400 6.400 17 C -0.150 4.150 18 C -0.138 4.138 19 C -0.112 4.112 20 C -0.162 4.162 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.158 4.158 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.233 0.767 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 24.262 -15.759 0.774 28.941 hybrid contribution -0.228 0.448 -0.016 0.503 sum 24.033 -15.311 0.759 28.506 Atomic orbital electron populations 1.69875 1.06211 1.27515 1.49136 1.24794 0.94812 0.99202 0.93788 0.86811 0.80565 0.83174 0.79107 1.19781 1.20830 1.18476 1.21070 0.88340 0.95349 1.53677 0.90121 1.19553 0.95364 0.77982 0.97067 1.46073 1.04892 1.11535 1.72517 1.19948 0.83684 0.89489 0.78386 1.90697 1.55342 1.45704 1.49720 1.22807 0.78098 0.97186 1.04785 1.86568 1.21701 1.32947 1.83433 1.23911 0.92389 0.81211 0.72247 1.90667 1.67281 1.36404 1.45683 1.21445 0.87230 1.00146 1.06196 1.21447 0.94689 0.93730 1.03930 1.22181 0.94241 0.96822 0.97954 1.22511 0.96213 1.00341 0.97127 1.22130 0.97541 0.97143 0.99549 1.22130 0.97189 0.98323 0.98695 1.22401 0.96183 0.96295 1.00889 0.92178 0.95426 0.95876 0.76702 0.88352 0.88359 0.87484 0.87501 0.90808 0.90789 0.90251 0.91363 0.91416 0.91983 0.91930 0.91978 0.91996 0.91648 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.55 -14.80 9.83 -34.44 -0.34 -15.14 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.22 5.38 4.50 -5.20 -0.02 5.36 16 10 N -0.70 -13.91 5.55 -61.48 -0.34 -14.25 16 11 C 0.50 9.58 7.91 -10.98 -0.09 9.49 16 12 O -0.54 -12.40 16.50 -14.10 -0.23 -12.63 16 13 C 0.05 0.71 5.94 36.01 0.21 0.93 16 14 O -0.33 -4.98 9.76 -45.90 -0.45 -5.43 16 15 C 0.46 5.78 7.96 36.01 0.29 6.07 16 16 O -0.51 -7.44 15.73 -18.75 -0.29 -7.73 16 17 C -0.11 -0.95 5.70 -27.88 -0.16 -1.11 16 18 C -0.10 -0.77 4.01 -26.73 -0.11 -0.88 16 19 C -0.09 -0.59 2.86 -88.59 -0.25 -0.84 16 20 C -0.12 -0.76 5.71 -25.03 -0.14 -0.90 16 21 C -0.13 -0.73 6.80 -25.61 -0.17 -0.90 16 22 C -0.13 -0.71 6.80 -25.62 -0.17 -0.89 16 23 C -0.12 -0.73 6.27 -25.07 -0.16 -0.89 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 26 H 0.02 0.58 7.57 -51.92 -0.39 0.19 16 27 H 0.40 6.84 8.32 -40.82 -0.34 6.50 16 28 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 29 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 30 H 0.11 0.78 7.66 -51.93 -0.40 0.38 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.07 0.63 7.96 -51.93 -0.41 0.21 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.44 7.95 -51.93 -0.41 0.02 16 36 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -33.03 349.80 -8.13 -41.16 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.97 Total: 0.12 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -1.21 Total: 2.39 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.43 Total: -39.67 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.98 Total: -25.79 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.03 -8.13 -41.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060572797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.022 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds