Wall clock time and date at job start Tue Mar 31 2020 05:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00333 * 2 1 4 4 H 1.48496 * 109.47211 * 270.00394 * 3 2 1 5 5 H 1.48505 * 109.46952 * 30.00060 * 3 2 1 6 6 H 1.48507 * 109.47358 * 150.00082 * 3 2 1 7 7 C 1.37885 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99460 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00175 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47297 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00084 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00236 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99689 * 179.97438 * 11 10 9 14 14 O 1.45204 * 109.46596 * 180.02562 * 13 11 10 15 15 C 1.34229 * 116.99360 * 180.02562 * 14 13 11 16 16 O 1.20822 * 120.00838 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99720 * 179.97438 * 15 14 13 18 18 C 1.53003 * 109.47328 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.47126 * 180.02562 * 18 17 15 20 20 C 1.54961 * 110.92578 * 71.54077 * 19 18 17 21 21 C 1.54270 * 104.16191 * 156.29427 * 20 19 18 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 0.96999 * 120.00105 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.47225 * 59.99798 * 9 7 2 26 26 H 1.09007 * 109.46990 * 300.00110 * 9 7 2 27 27 H 0.97009 * 119.99853 * 0.02562 * 10 9 7 28 28 H 1.08998 * 109.46840 * 60.00523 * 13 11 10 29 29 H 1.08994 * 109.47483 * 300.00099 * 13 11 10 30 30 H 1.09001 * 109.47076 * 60.00556 * 17 15 14 31 31 H 1.09000 * 109.47029 * 300.00108 * 17 15 14 32 32 H 1.08995 * 109.46922 * 60.00027 * 18 17 15 33 33 H 1.09000 * 109.47141 * 300.00024 * 18 17 15 34 34 H 1.09001 * 110.67554 * 308.23161 * 19 18 17 35 35 H 1.08997 * 110.47708 * 37.64024 * 20 19 18 36 36 H 1.09002 * 110.53308 * 274.97416 * 20 19 18 37 37 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 38 38 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 39 39 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 40 40 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 41 41 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 42 42 H 1.09000 * 110.48806 * 264.79985 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 5.3249 -2.8216 -0.0020 12 8 6.1131 -1.8998 -0.0025 13 6 5.8272 -4.2425 -0.0013 14 8 7.2792 -4.2424 -0.0020 15 6 7.8885 -5.4385 -0.0020 16 8 7.2305 -6.4518 -0.0019 17 6 9.3935 -5.5174 -0.0033 18 6 9.8273 -6.9846 -0.0037 19 6 11.3551 -7.0647 -0.0043 20 6 11.9324 -6.6362 1.3685 21 6 13.3124 -7.3231 1.4286 22 6 13.2463 -8.5291 0.4754 23 6 11.8278 -8.5343 -0.1310 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6805 0.8887 26 1 3.8745 -0.6801 -0.8912 27 1 3.3695 -3.3127 -0.0010 28 1 5.4631 -4.7569 -0.8906 29 1 5.4647 -4.7556 0.8894 30 1 9.7840 -5.0230 0.8862 31 1 9.7824 -5.0236 -0.8938 32 1 9.4368 -7.4787 -0.8933 33 1 9.4383 -7.4788 0.8866 34 1 11.7722 -6.4545 -0.8055 35 1 11.2943 -6.9907 2.1779 36 1 12.0431 -5.5528 1.4153 37 1 13.5175 -7.6608 2.4445 38 1 14.0885 -6.6310 1.1018 39 1 13.9896 -8.4220 -0.3145 40 1 13.4200 -9.4522 1.0285 41 1 11.8616 -8.8353 -1.1780 42 1 11.1735 -9.1977 0.4347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060572797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:14 Heat of formation + Delta-G solvation = -175.100681 kcal Electronic energy + Delta-G solvation = -21269.486474 eV Core-core repulsion = 17826.507667 eV Total energy + Delta-G solvation = -3442.978807 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.75314 -40.46335 -39.23739 -37.59231 -36.21301 -34.47693 -34.31316 -31.24540 -29.75723 -29.41380 -28.42506 -24.89976 -23.97562 -21.87704 -21.71599 -21.04872 -20.71880 -19.36590 -18.77136 -18.09853 -17.96949 -17.08205 -16.84931 -16.68017 -16.38734 -15.92645 -15.50054 -15.31548 -14.80194 -14.53601 -14.35022 -14.23249 -13.99691 -13.77253 -13.57779 -13.09353 -13.01072 -12.71223 -12.30069 -12.09227 -11.93914 -11.90810 -11.89460 -11.83463 -11.68349 -11.53496 -11.41576 -11.30533 -11.20806 -10.97221 -10.92967 -10.05537 -8.40656 -6.48487 1.12164 1.27795 1.33712 1.37133 1.47718 1.50576 2.27857 2.49920 2.94606 3.58849 3.63355 3.68742 3.82798 3.85449 4.03703 4.04744 4.16176 4.21977 4.54368 4.61672 4.64332 4.68343 4.73894 4.74900 4.83503 4.91423 4.99440 5.00428 5.15178 5.17730 5.21629 5.22858 5.30895 5.31882 5.38992 5.41058 5.55826 5.60101 6.04817 6.50952 6.60735 6.72427 7.10491 7.25951 8.73859 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.051151 B = 0.002235 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.268766 B =12524.673262 C =12913.340583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.550 4.550 8 H 0.061 0.939 9 C 0.232 3.768 10 N -0.698 5.698 11 C 0.505 3.495 12 O -0.578 6.578 13 C 0.057 3.943 14 O -0.349 6.349 15 C 0.460 3.540 16 O -0.534 6.534 17 C -0.108 4.108 18 C -0.094 4.094 19 C -0.089 4.089 20 C -0.126 4.126 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.122 4.122 24 H 0.273 0.727 25 H 0.018 0.982 26 H 0.017 0.983 27 H 0.413 0.587 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.946 -16.523 0.641 30.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.109 3.891 10 N -0.349 5.349 11 C 0.290 3.710 12 O -0.458 6.458 13 C -0.020 4.020 14 O -0.265 6.265 15 C 0.305 3.695 16 O -0.423 6.423 17 C -0.145 4.145 18 C -0.132 4.132 19 C -0.107 4.107 20 C -0.163 4.163 21 C -0.165 4.165 22 C -0.164 4.164 23 C -0.160 4.160 24 H 0.082 0.918 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.249 0.751 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 26.102 -16.038 0.647 30.643 hybrid contribution -0.804 0.422 0.028 0.908 sum 25.299 -15.616 0.676 29.738 Atomic orbital electron populations 1.69978 1.07723 1.28684 1.50478 1.25613 0.95562 1.02752 0.93526 0.85846 0.79278 0.79199 0.79512 1.18920 1.19876 1.18284 1.21278 0.89825 0.94721 1.52916 0.92089 1.19175 0.93446 0.80330 0.96175 1.45878 1.05922 1.10366 1.72742 1.20601 0.82684 0.91073 0.76595 1.90674 1.56189 1.47545 1.51399 1.22695 0.78632 0.93739 1.06924 1.86575 1.21573 1.34501 1.83854 1.24679 0.93634 0.80102 0.71101 1.90659 1.68009 1.36839 1.46818 1.21613 0.84181 1.00919 1.07768 1.21390 0.95625 0.93061 1.03093 1.22147 0.93074 0.97113 0.98376 1.22529 0.96308 1.00718 0.96795 1.22147 0.97440 0.97228 0.99670 1.22140 0.96969 0.98421 0.98836 1.22415 0.96375 0.96095 1.01078 0.91799 0.96458 0.96549 0.75111 0.86106 0.86158 0.85943 0.85637 0.91543 0.91789 0.89412 0.91860 0.90869 0.91913 0.91518 0.91515 0.91848 0.91316 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.07 13.96 21.45 0.30 -54.77 16 2 C 0.03 1.45 5.47 84.66 0.46 1.92 16 3 Si 0.94 43.41 27.47 68.60 1.88 45.29 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.26 -11.81 6.54 99.48 0.65 -11.16 16 7 C -0.55 -29.88 9.83 25.60 0.25 -29.63 16 8 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 9 C 0.23 11.15 4.50 85.63 0.38 11.54 16 10 N -0.70 -27.13 5.55 -466.80 -2.59 -29.72 16 11 C 0.50 18.67 7.91 87.66 0.69 19.37 16 12 O -0.58 -26.27 16.50 15.77 0.26 -26.01 16 13 C 0.06 1.56 5.94 71.24 0.42 1.98 16 14 O -0.35 -9.86 9.76 -45.05 -0.44 -10.30 16 15 C 0.46 10.74 7.96 71.24 0.57 11.31 16 16 O -0.53 -14.66 15.73 21.98 0.35 -14.32 16 17 C -0.11 -1.58 5.70 29.85 0.17 -1.41 16 18 C -0.09 -1.30 4.01 30.59 0.12 -1.17 16 19 C -0.09 -0.95 2.86 -9.48 -0.03 -0.98 16 20 C -0.13 -1.32 5.71 31.70 0.18 -1.14 16 21 C -0.13 -1.26 6.80 31.32 0.21 -1.04 16 22 C -0.13 -1.23 6.80 31.32 0.21 -1.02 16 23 C -0.12 -1.31 6.27 31.67 0.20 -1.12 16 24 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 25 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 26 H 0.02 0.82 7.57 -2.38 -0.02 0.80 16 27 H 0.41 13.74 8.32 -92.70 -0.77 12.97 16 28 H 0.12 2.80 8.13 -2.39 -0.02 2.78 16 29 H 0.12 2.79 8.13 -2.39 -0.02 2.77 16 30 H 0.12 1.47 7.66 -2.39 -0.02 1.45 16 31 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.02 8.10 -2.39 -0.02 1.00 16 33 H 0.06 1.01 7.96 -2.39 -0.02 0.99 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.73 7.95 -2.39 -0.02 0.71 16 36 H 0.07 0.69 8.10 -2.39 -0.02 0.67 16 37 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.74 8.05 -2.39 -0.02 0.72 16 Total: -1.00 -70.12 349.80 3.79 -66.33 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.18 Total: 14.90 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 3.85 Total: 8.59 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -2.29 Total: -84.49 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: 0.17 Total: -50.63 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.29 kcal Total: -70.12 3.79 -66.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060572797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.769 kcal (2) G-P(sol) polarization free energy of solvation -70.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds