Wall clock time and date at job start Tue Mar 31 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46726 * 2 1 4 4 C 1.52991 * 109.47268 * 240.00123 * 2 1 3 5 5 C 1.50698 * 109.46877 * 119.99528 * 2 1 3 6 6 O 1.21276 * 120.00009 * 7.80245 * 5 2 1 7 7 N 1.34773 * 119.99742 * 187.80390 * 5 2 1 8 8 C 1.46925 * 120.63385 * 353.93164 * 7 5 2 9 9 C 1.53190 * 108.78111 * 233.88794 * 8 7 5 10 10 C 1.53036 * 109.31251 * 305.36535 * 9 8 7 11 11 C 1.53041 * 109.53754 * 61.36294 * 10 9 8 12 12 H 1.08998 * 109.49908 * 58.58950 * 11 10 9 13 13 C 1.50708 * 109.52716 * 178.66764 * 11 10 9 14 14 O 1.21205 * 120.00098 * 119.85465 * 13 11 10 15 15 O 1.34315 * 119.99736 * 299.85602 * 13 11 10 16 16 C 1.34921 * 116.99756 * 179.97438 * 15 13 11 17 17 H 1.07993 * 119.99989 * 359.97438 * 16 15 13 18 18 C 1.38756 * 119.99637 * 180.02562 * 16 15 13 19 19 N 1.31444 * 119.99471 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00105 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46689 * 89.99974 * 20 18 16 22 22 H 1.48490 * 109.47096 * 210.00016 * 20 18 16 23 23 H 1.48497 * 109.47491 * 330.00342 * 20 18 16 24 24 C 1.46932 * 120.63165 * 174.21914 * 7 5 2 25 25 H 1.08993 * 109.47404 * 300.00603 * 1 2 3 26 26 H 1.09005 * 109.46905 * 60.00847 * 1 2 3 27 27 H 1.09005 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47014 * 190.25508 * 3 2 1 29 29 H 1.09001 * 109.46716 * 310.25150 * 3 2 1 30 30 H 1.08997 * 109.47094 * 70.24905 * 3 2 1 31 31 H 1.09004 * 109.47360 * 312.30342 * 4 2 1 32 32 H 1.09001 * 109.47769 * 72.30672 * 4 2 1 33 33 H 1.09000 * 109.46943 * 192.31321 * 4 2 1 34 34 H 1.09002 * 109.58633 * 353.67955 * 8 7 5 35 35 H 1.09000 * 109.58575 * 114.09684 * 8 7 5 36 36 H 1.08998 * 109.50116 * 185.41520 * 9 8 7 37 37 H 1.08999 * 109.52320 * 65.33048 * 9 8 7 38 38 H 1.09004 * 109.46235 * 301.34899 * 10 9 8 39 39 H 1.08999 * 109.46358 * 181.38264 * 10 9 8 40 40 H 0.96993 * 119.99408 * 180.02562 * 19 18 16 41 41 H 1.08992 * 109.58531 * 245.90083 * 24 7 5 42 42 H 1.08999 * 109.58060 * 6.32880 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 8 1.2533 -1.2930 1.9547 7 7 3.3471 -0.6980 1.5262 8 6 4.3189 -0.1119 0.5929 9 6 5.4065 -1.1494 0.2974 10 6 6.0146 -1.6346 1.6153 11 6 4.9299 -2.3005 2.4650 12 1 4.4964 -3.1346 1.9133 13 6 5.5357 -2.8072 3.7486 14 8 5.1342 -2.3912 4.8139 15 8 6.5205 -3.7197 3.7120 16 6 7.0191 -4.1307 4.8964 17 1 6.6254 -3.7268 5.8174 18 6 8.0385 -5.0714 4.9312 19 7 8.5238 -5.4721 6.0851 20 14 8.7200 -5.7694 3.3382 21 1 9.8504 -4.9266 2.8722 22 1 9.1988 -7.1557 3.5701 23 1 7.6526 -5.7805 2.3059 24 6 3.8369 -1.2760 2.7851 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1144 1.4481 -0.1829 29 1 1.5349 2.0064 -0.7844 30 1 1.8336 1.9009 0.9672 31 1 1.5091 -1.6660 -1.3655 32 1 1.8667 -0.0967 -2.1256 33 1 3.1078 -0.9149 -1.1464 34 1 3.8153 0.1636 -0.3337 35 1 4.7700 0.7725 1.0427 36 1 6.1844 -0.6962 -0.3171 37 1 4.9691 -1.9945 -0.2342 38 1 6.4305 -0.7854 2.1577 39 1 6.8058 -2.3548 1.4069 40 1 9.2367 -6.1294 6.1094 41 1 4.2487 -0.4866 3.4137 42 1 3.0152 -1.7686 3.3049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064265300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:23 Heat of formation + Delta-G solvation = -114.194098 kcal Electronic energy + Delta-G solvation = -23506.226905 eV Core-core repulsion = 20065.889205 eV Total energy + Delta-G solvation = -3440.337699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.90545 -39.34051 -37.36104 -36.09214 -35.30216 -32.90358 -32.25896 -31.22089 -27.69145 -27.55103 -26.12455 -25.65804 -23.79853 -22.38551 -21.00815 -19.43829 -18.81092 -17.97947 -16.97727 -16.50019 -16.13397 -15.48062 -15.13693 -14.91727 -14.58865 -14.36078 -14.08262 -13.90047 -13.77575 -13.33632 -12.85298 -12.75675 -12.56400 -12.48928 -12.38131 -12.18024 -12.04789 -11.89278 -11.43378 -11.35675 -11.22956 -11.21795 -10.96448 -10.64621 -10.49857 -10.41876 -10.35490 -9.70887 -9.60978 -9.14135 -8.68934 -8.63611 -6.37033 -4.12652 2.59216 2.87040 3.11983 3.23121 3.33145 3.39169 4.12466 4.18325 4.24285 4.48147 4.57818 4.67925 4.80038 4.85620 4.96476 5.02891 5.12366 5.20091 5.26281 5.31441 5.35033 5.40190 5.49301 5.54603 5.59726 5.66813 5.69855 5.78875 5.83185 5.94082 5.96233 6.04853 6.07640 6.23021 6.29618 6.37749 6.55710 7.37479 7.73723 8.03843 8.15216 8.61217 9.01274 9.68017 10.71654 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.031509 B = 0.004115 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.432496 B = 6803.111442 C = 7163.859372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.086 4.086 3 C -0.157 4.157 4 C -0.154 4.154 5 C 0.523 3.477 6 O -0.537 6.537 7 N -0.608 5.608 8 C 0.082 3.918 9 C -0.136 4.136 10 C -0.113 4.113 11 C -0.084 4.084 12 H 0.098 0.902 13 C 0.416 3.584 14 O -0.538 6.538 15 O -0.249 6.249 16 C -0.382 4.382 17 H 0.109 0.891 18 C 0.066 3.934 19 N -0.875 5.875 20 Si 0.904 3.096 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.260 1.260 24 C 0.131 3.869 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.279 0.721 41 H 0.079 0.921 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.024 12.862 -19.111 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.089 4.089 3 C -0.214 4.214 4 C -0.211 4.211 5 C 0.311 3.689 6 O -0.413 6.413 7 N -0.341 5.341 8 C -0.040 4.040 9 C -0.174 4.174 10 C -0.151 4.151 11 C -0.105 4.105 12 H 0.116 0.884 13 C 0.261 3.739 14 O -0.432 6.432 15 O -0.158 6.158 16 C -0.457 4.457 17 H 0.127 0.873 18 C -0.138 4.138 19 N -0.514 5.514 20 Si 0.730 3.270 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C 0.008 3.992 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.393 12.510 -18.320 24.090 hybrid contribution 0.568 -0.483 -0.402 0.847 sum -8.825 12.027 -18.722 23.939 Atomic orbital electron populations 1.21664 0.91895 1.02973 1.01854 1.20772 0.98045 0.96318 0.93761 1.22290 1.02326 0.93827 1.02953 1.22145 1.02111 1.00938 0.95915 1.20595 0.81623 0.80050 0.86657 1.90701 1.55088 1.43887 1.51624 1.48067 1.06201 1.59197 1.20666 1.22484 0.90739 0.96330 0.94425 1.21987 0.98135 0.99304 0.97953 1.21522 0.97404 1.01233 0.94922 1.21101 0.96429 0.99134 0.93813 0.88357 1.22670 0.80730 0.80329 0.90148 1.90611 1.61813 1.58486 1.32323 1.83507 1.45294 1.50438 1.36527 1.20660 1.18114 1.23768 0.83192 0.87330 1.24543 0.95494 0.95594 0.98137 1.69610 1.26539 1.30763 1.24510 0.86230 0.79662 0.78204 0.82935 1.19857 1.20760 1.18423 1.21395 0.97124 0.96159 0.84485 0.92086 0.92104 0.91743 0.90608 0.91477 0.92007 0.91741 0.91242 0.90973 0.87395 0.91052 0.90114 0.91164 0.91028 0.89992 0.91051 0.90250 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 7.75 37.16 0.29 -0.89 16 2 C -0.09 -0.80 0.75 -155.66 -0.12 -0.92 16 3 C -0.16 -1.12 7.97 37.16 0.30 -0.83 16 4 C -0.15 -1.14 8.10 37.15 0.30 -0.84 16 5 C 0.52 7.13 6.45 -10.99 -0.07 7.06 16 6 O -0.54 -9.61 15.40 5.56 0.09 -9.52 16 7 N -0.61 -7.83 2.96 -172.77 -0.51 -8.34 16 8 C 0.08 0.75 3.99 -3.71 -0.01 0.73 16 9 C -0.14 -1.30 5.92 -26.61 -0.16 -1.46 16 10 C -0.11 -1.56 5.11 -26.69 -0.14 -1.69 16 11 C -0.08 -1.45 2.78 -91.65 -0.25 -1.71 16 12 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 13 C 0.42 9.81 7.21 36.01 0.26 10.07 16 14 O -0.54 -14.36 15.16 -19.05 -0.29 -14.65 16 15 O -0.25 -6.56 8.46 -20.72 -0.18 -6.74 16 16 C -0.38 -11.42 10.10 30.92 0.31 -11.11 16 17 H 0.11 3.60 7.09 -52.49 -0.37 3.22 16 18 C 0.07 1.90 5.49 -17.53 -0.10 1.80 16 19 N -0.87 -26.08 13.96 55.48 0.77 -25.31 16 20 Si 0.90 21.34 28.62 -169.99 -4.86 16.48 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 24 C 0.13 2.13 5.07 -3.71 -0.02 2.11 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.68 8.02 -51.93 -0.42 0.26 16 28 H 0.08 0.45 4.71 -51.93 -0.24 0.21 16 29 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16 30 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.07 0.51 4.95 -51.93 -0.26 0.25 16 34 H 0.11 0.73 2.56 -51.93 -0.13 0.60 16 35 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.67 7.99 -51.93 -0.41 0.26 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 40 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.08 1.32 7.96 -51.93 -0.41 0.90 16 42 H 0.10 1.88 7.00 -51.93 -0.36 1.52 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -34.80 330.45 -5.80 -40.59 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.39 Total: 0.18 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 0.59 Total: 2.33 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.26 Total: -33.65 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.38 Total: -30.91 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.86 Total: 16.48 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.80 -5.80 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064265300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.600 kcal (2) G-P(sol) polarization free energy of solvation -34.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds