Wall clock time and date at job start Tue Mar 31 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46726 * 2 1 4 4 C 1.52991 * 109.47268 * 240.00123 * 2 1 3 5 5 C 1.50698 * 109.46877 * 119.99528 * 2 1 3 6 6 O 1.21276 * 120.00009 * 7.80245 * 5 2 1 7 7 N 1.34773 * 119.99742 * 187.80390 * 5 2 1 8 8 C 1.46925 * 120.63385 * 353.93164 * 7 5 2 9 9 C 1.53190 * 108.78111 * 233.88794 * 8 7 5 10 10 C 1.53036 * 109.31251 * 305.36535 * 9 8 7 11 11 C 1.53041 * 109.53754 * 61.36294 * 10 9 8 12 12 H 1.08998 * 109.49908 * 58.58950 * 11 10 9 13 13 C 1.50708 * 109.52716 * 178.66764 * 11 10 9 14 14 O 1.21205 * 120.00098 * 119.85465 * 13 11 10 15 15 O 1.34315 * 119.99736 * 299.85602 * 13 11 10 16 16 C 1.34921 * 116.99756 * 179.97438 * 15 13 11 17 17 H 1.07993 * 119.99989 * 359.97438 * 16 15 13 18 18 C 1.38756 * 119.99637 * 180.02562 * 16 15 13 19 19 N 1.31444 * 119.99471 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00105 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46689 * 89.99974 * 20 18 16 22 22 H 1.48490 * 109.47096 * 210.00016 * 20 18 16 23 23 H 1.48497 * 109.47491 * 330.00342 * 20 18 16 24 24 C 1.46932 * 120.63165 * 174.21914 * 7 5 2 25 25 H 1.08993 * 109.47404 * 300.00603 * 1 2 3 26 26 H 1.09005 * 109.46905 * 60.00847 * 1 2 3 27 27 H 1.09005 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47014 * 190.25508 * 3 2 1 29 29 H 1.09001 * 109.46716 * 310.25150 * 3 2 1 30 30 H 1.08997 * 109.47094 * 70.24905 * 3 2 1 31 31 H 1.09004 * 109.47360 * 312.30342 * 4 2 1 32 32 H 1.09001 * 109.47769 * 72.30672 * 4 2 1 33 33 H 1.09000 * 109.46943 * 192.31321 * 4 2 1 34 34 H 1.09002 * 109.58633 * 353.67955 * 8 7 5 35 35 H 1.09000 * 109.58575 * 114.09684 * 8 7 5 36 36 H 1.08998 * 109.50116 * 185.41520 * 9 8 7 37 37 H 1.08999 * 109.52320 * 65.33048 * 9 8 7 38 38 H 1.09004 * 109.46235 * 301.34899 * 10 9 8 39 39 H 1.08999 * 109.46358 * 181.38264 * 10 9 8 40 40 H 0.96993 * 119.99408 * 180.02562 * 19 18 16 41 41 H 1.08992 * 109.58531 * 245.90083 * 24 7 5 42 42 H 1.08999 * 109.58060 * 6.32880 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 8 1.2533 -1.2930 1.9547 7 7 3.3471 -0.6980 1.5262 8 6 4.3189 -0.1119 0.5929 9 6 5.4065 -1.1494 0.2974 10 6 6.0146 -1.6346 1.6153 11 6 4.9299 -2.3005 2.4650 12 1 4.4964 -3.1346 1.9133 13 6 5.5357 -2.8072 3.7486 14 8 5.1342 -2.3912 4.8139 15 8 6.5205 -3.7197 3.7120 16 6 7.0191 -4.1307 4.8964 17 1 6.6254 -3.7268 5.8174 18 6 8.0385 -5.0714 4.9312 19 7 8.5238 -5.4721 6.0851 20 14 8.7200 -5.7694 3.3382 21 1 9.8504 -4.9266 2.8722 22 1 9.1988 -7.1557 3.5701 23 1 7.6526 -5.7805 2.3059 24 6 3.8369 -1.2760 2.7851 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1144 1.4481 -0.1829 29 1 1.5349 2.0064 -0.7844 30 1 1.8336 1.9009 0.9672 31 1 1.5091 -1.6660 -1.3655 32 1 1.8667 -0.0967 -2.1256 33 1 3.1078 -0.9149 -1.1464 34 1 3.8153 0.1636 -0.3337 35 1 4.7700 0.7725 1.0427 36 1 6.1844 -0.6962 -0.3171 37 1 4.9691 -1.9945 -0.2342 38 1 6.4305 -0.7854 2.1577 39 1 6.8058 -2.3548 1.4069 40 1 9.2367 -6.1294 6.1094 41 1 4.2487 -0.4866 3.4137 42 1 3.0152 -1.7686 3.3049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064265300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:23 Heat of formation + Delta-G solvation = -137.662338 kcal Electronic energy + Delta-G solvation = -23507.244564 eV Core-core repulsion = 20065.889205 eV Total energy + Delta-G solvation = -3441.355359 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.02319 -41.16813 -38.63084 -37.42934 -36.86939 -34.58036 -33.96020 -32.34667 -28.44022 -28.21693 -27.83560 -26.89348 -25.23544 -23.34480 -22.27351 -21.01445 -20.19610 -19.80211 -18.63329 -17.71349 -17.08992 -16.96532 -16.82212 -16.35042 -15.86189 -15.63985 -15.32496 -15.00100 -14.83512 -14.54499 -14.38958 -14.20451 -13.81465 -13.56615 -13.26449 -13.23384 -13.05096 -12.90776 -12.66787 -12.50086 -12.42858 -12.25528 -12.25313 -12.03730 -11.89306 -11.88722 -11.71387 -11.28903 -11.06009 -10.86331 -10.59619 -9.75919 -8.57977 -6.45840 1.23836 1.31583 1.48310 1.53525 1.56275 1.76104 2.25450 2.47292 2.87449 3.33253 3.56024 3.71060 3.80742 3.87815 3.95214 4.01001 4.11876 4.22573 4.36877 4.45841 4.62151 4.65072 4.68872 4.71591 4.74094 4.80858 4.86327 4.94744 4.97939 5.02889 5.09682 5.13699 5.26776 5.29794 5.33752 5.41063 5.43483 5.48936 5.85366 6.37626 6.46879 6.77823 7.10419 7.51958 8.55245 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.031509 B = 0.004115 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.432496 B = 6803.111442 C = 7163.859372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 C -0.154 4.154 4 C -0.152 4.152 5 C 0.512 3.488 6 O -0.592 6.592 7 N -0.603 5.603 8 C 0.075 3.925 9 C -0.126 4.126 10 C -0.112 4.112 11 C -0.072 4.072 12 H 0.108 0.892 13 C 0.414 3.586 14 O -0.577 6.577 15 O -0.250 6.250 16 C -0.413 4.413 17 H 0.053 0.947 18 C 0.016 3.984 19 N -0.917 5.917 20 Si 0.986 3.014 21 H -0.253 1.253 22 H -0.266 1.266 23 H -0.250 1.250 24 C 0.138 3.862 25 H 0.042 0.958 26 H 0.093 0.907 27 H 0.044 0.956 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.142 0.858 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.290 0.710 41 H 0.071 0.929 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.956 14.086 -24.207 29.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.083 4.083 3 C -0.211 4.211 4 C -0.209 4.209 5 C 0.303 3.697 6 O -0.473 6.473 7 N -0.335 5.335 8 C -0.045 4.045 9 C -0.164 4.164 10 C -0.150 4.150 11 C -0.093 4.093 12 H 0.126 0.874 13 C 0.261 3.739 14 O -0.473 6.473 15 O -0.159 6.159 16 C -0.488 4.488 17 H 0.071 0.929 18 C -0.184 4.184 19 N -0.557 5.557 20 Si 0.805 3.195 21 H -0.177 1.177 22 H -0.191 1.191 23 H -0.174 1.174 24 C 0.015 3.985 25 H 0.061 0.939 26 H 0.112 0.888 27 H 0.063 0.937 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.159 0.841 35 H 0.106 0.894 36 H 0.139 0.861 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.315 13.770 -23.427 28.418 hybrid contribution 0.131 -0.796 1.322 1.549 sum -8.184 12.973 -22.105 26.906 Atomic orbital electron populations 1.21691 0.92253 1.01938 1.02547 1.20859 0.97784 0.97484 0.92167 1.22319 1.03687 0.91959 1.03153 1.22183 1.02260 1.00812 0.95646 1.21636 0.81233 0.79349 0.87506 1.90676 1.56499 1.46339 1.53742 1.48162 1.06959 1.58613 1.19808 1.22910 0.90132 0.96569 0.94901 1.22010 0.99001 0.99773 0.95568 1.21600 0.96040 1.00820 0.96535 1.21226 0.97524 0.99763 0.90739 0.87400 1.24179 0.79114 0.78470 0.92117 1.90591 1.62600 1.59340 1.34757 1.83515 1.46411 1.51514 1.34440 1.20327 1.20005 1.25723 0.82791 0.92878 1.25634 0.94890 0.95007 1.02871 1.69712 1.27187 1.31362 1.27411 0.85046 0.79366 0.78014 0.77091 1.17670 1.19104 1.17397 1.21020 0.95527 0.95606 0.86390 0.93859 0.88848 0.93725 0.88814 0.88790 0.93591 0.92901 0.87999 0.90119 0.84114 0.89443 0.86140 0.90470 0.91072 0.90370 0.89986 0.91062 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 7.75 71.98 0.56 -1.64 16 2 C -0.08 -1.29 0.75 -52.93 -0.04 -1.33 16 3 C -0.15 -1.59 7.97 71.98 0.57 -1.02 16 4 C -0.15 -1.61 8.10 71.98 0.58 -1.02 16 5 C 0.51 13.75 6.45 87.66 0.57 14.31 16 6 O -0.59 -22.29 15.40 -3.02 -0.05 -22.33 16 7 N -0.60 -14.81 2.96 -818.92 -2.42 -17.23 16 8 C 0.07 1.05 3.99 86.36 0.34 1.40 16 9 C -0.13 -1.82 5.92 30.67 0.18 -1.64 16 10 C -0.11 -2.83 5.11 30.62 0.16 -2.67 16 11 C -0.07 -2.50 2.78 -11.46 -0.03 -2.53 16 12 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 13 C 0.41 20.39 7.21 71.24 0.51 20.91 16 14 O -0.58 -33.07 15.16 20.79 0.32 -32.76 16 15 O -0.25 -13.54 8.46 14.82 0.13 -13.42 16 16 C -0.41 -25.97 10.10 67.94 0.69 -25.28 16 17 H 0.05 3.83 7.09 -2.91 -0.02 3.81 16 18 C 0.02 0.94 5.49 84.87 0.47 1.40 16 19 N -0.92 -56.18 13.96 21.63 0.30 -55.88 16 20 Si 0.99 43.38 28.62 68.60 1.96 45.35 16 21 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.25 -10.55 7.11 99.48 0.71 -9.85 16 24 C 0.14 4.67 5.07 86.36 0.44 5.10 16 25 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.04 0.94 8.02 -2.38 -0.02 0.92 16 28 H 0.09 0.61 4.71 -2.39 -0.01 0.60 16 29 H 0.09 0.53 8.11 -2.39 -0.02 0.51 16 30 H 0.04 0.64 8.10 -2.39 -0.02 0.62 16 31 H 0.05 0.71 8.09 -2.39 -0.02 0.69 16 32 H 0.10 0.48 8.09 -2.39 -0.02 0.46 16 33 H 0.08 0.71 4.95 -2.39 -0.01 0.70 16 34 H 0.14 1.11 2.56 -2.39 -0.01 1.10 16 35 H 0.09 1.04 8.13 -2.39 -0.02 1.02 16 36 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.08 7.99 -2.39 -0.02 1.06 16 38 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.08 2.07 8.09 -2.39 -0.02 2.06 16 40 H 0.29 15.94 8.31 -92.71 -0.77 15.17 16 41 H 0.07 2.48 7.96 -2.39 -0.02 2.46 16 42 H 0.06 2.59 7.00 -2.39 -0.02 2.58 16 Total: -1.00 -84.36 330.45 6.25 -78.11 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 1.01 Total: 12.17 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 5.00 Total: 5.99 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -2.12 Total: -73.11 kcal Atomic # 8 Polarization: -68.90 SS G_CDS: 0.39 Total: -68.51 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.96 Total: 45.35 kcal Total: -84.36 6.25 -78.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064265300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.552 kcal (2) G-P(sol) polarization free energy of solvation -84.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds