Wall clock time and date at job start Tue Mar 31 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 117.00139 * 2 1 4 4 O 1.20833 * 119.99552 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00185 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47070 * 180.02562 * 5 3 2 7 7 C 1.37095 * 119.99775 * 269.99919 * 6 5 3 8 8 H 1.08006 * 120.00214 * 202.38287 * 7 6 5 9 9 C 1.38947 * 120.00250 * 22.38828 * 7 6 5 10 10 N 1.31414 * 120.00140 * 351.59382 * 9 7 6 11 11 Si 1.86803 * 120.00347 * 171.59638 * 9 7 6 12 12 H 1.48502 * 109.46747 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47229 * 119.99810 * 11 9 7 14 14 H 1.48500 * 109.46913 * 240.00202 * 11 9 7 15 15 C 1.34775 * 120.00032 * 90.00640 * 6 5 3 16 16 O 1.21289 * 119.99913 * 4.80049 * 15 6 5 17 17 C 1.50706 * 119.99980 * 184.80739 * 15 6 5 18 18 C 1.52996 * 117.49830 * 220.56362 * 17 15 6 19 19 C 1.52999 * 117.49622 * 215.00273 * 18 17 15 20 20 C 1.53007 * 117.49784 * 0.02562 * 18 17 15 21 21 C 1.52997 * 117.49702 * 289.22543 * 17 15 6 22 22 C 1.53006 * 117.49933 * 359.97436 * 21 17 15 23 23 C 1.52997 * 117.50065 * 144.97393 * 21 17 15 24 24 H 1.09002 * 109.46711 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47116 * 300.00082 * 1 2 3 26 26 H 1.08999 * 109.46834 * 60.00151 * 1 2 3 27 27 H 1.08998 * 109.46715 * 60.00282 * 5 3 2 28 28 H 1.08998 * 109.47175 * 300.00113 * 5 3 2 29 29 H 0.96997 * 120.00111 * 185.01381 * 10 9 7 30 30 H 1.09000 * 115.55046 * 74.89112 * 17 15 6 31 31 H 1.08999 * 109.47272 * 116.12461 * 19 18 17 32 32 H 1.09001 * 109.46833 * 236.11677 * 19 18 17 33 33 H 1.08989 * 109.47302 * 356.12176 * 19 18 17 34 34 H 1.08994 * 109.46982 * 8.61019 * 20 18 17 35 35 H 1.08997 * 109.46605 * 128.61020 * 20 18 17 36 36 H 1.08996 * 109.47166 * 248.60976 * 20 18 17 37 37 H 1.08999 * 109.46864 * 115.57058 * 22 21 17 38 38 H 1.09002 * 109.46515 * 235.56966 * 22 21 17 39 39 H 1.09005 * 109.46946 * 355.56827 * 22 21 17 40 40 H 1.09004 * 109.46917 * 8.60573 * 23 21 17 41 41 H 1.09002 * 109.47095 * 128.60474 * 23 21 17 42 42 H 1.08992 * 109.47215 * 248.60507 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.1765 3.3374 -1.1860 8 1 4.8069 4.2136 -1.2209 9 6 3.5627 2.8767 -2.3443 10 7 2.9326 1.7235 -2.3400 11 14 3.6333 3.8965 -3.9078 12 1 4.3962 5.1444 -3.6508 13 1 4.3054 3.1163 -4.9777 14 1 2.2539 4.2398 -4.3375 15 6 4.1724 3.3257 1.1685 16 8 4.0854 2.7219 2.2169 17 6 4.4937 4.7981 1.1713 18 6 5.5474 5.2894 2.1658 19 6 5.3456 6.6753 2.7816 20 6 6.1947 4.2481 3.0811 21 6 5.8771 5.2202 0.6726 22 6 6.8288 4.1151 0.2099 23 6 5.9799 6.5420 -0.0909 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9563 0.7806 -0.8892 28 1 3.9557 0.7809 0.8908 29 1 2.5670 1.3675 -3.1649 30 1 3.6567 5.4623 0.9556 31 1 5.2019 6.5775 3.8577 32 1 6.2239 7.2908 2.5869 33 1 4.4673 7.1452 2.3391 34 1 5.8934 3.2493 2.7653 35 1 7.2795 4.3362 3.0214 36 1 5.8725 4.4169 4.1086 37 1 7.0301 4.2314 -0.8550 38 1 7.7637 4.1843 0.7662 39 1 6.3706 3.1424 0.3890 40 1 5.0289 7.0713 -0.0306 41 1 6.7659 7.1557 0.3493 42 1 6.2182 6.3408 -1.1353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073848243.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:24 Heat of formation + Delta-G solvation = -87.291734 kcal Electronic energy + Delta-G solvation = -24497.911483 eV Core-core repulsion = 21058.740357 eV Total energy + Delta-G solvation = -3439.171125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.01453 -39.04693 -37.09452 -35.35228 -34.55458 -31.54095 -30.67560 -28.84202 -28.06574 -27.33873 -26.16593 -25.76571 -24.51984 -21.56453 -19.85649 -18.93109 -17.34567 -16.75955 -16.48901 -16.01911 -15.46392 -15.15454 -14.77194 -14.39030 -14.21502 -14.15072 -13.31509 -12.86705 -12.81924 -12.49006 -12.38495 -12.14263 -11.98845 -11.90621 -11.72045 -11.48331 -11.37976 -11.34627 -11.23325 -11.19391 -10.97312 -10.72087 -10.46656 -10.37127 -10.31132 -9.79877 -9.51941 -9.03540 -9.01381 -8.89660 -8.35620 -7.89084 -6.40347 -4.00837 3.07718 3.19148 3.22340 3.48389 3.75054 3.99297 4.08311 4.17991 4.69365 5.04834 5.19977 5.26747 5.37275 5.56450 5.59901 5.71953 5.79408 5.94718 5.95696 5.97277 6.08084 6.17017 6.21085 6.28011 6.32713 6.38549 6.42787 6.46304 6.50439 6.51391 6.53573 6.65330 6.75927 6.89028 6.95261 7.09204 7.42998 7.51853 7.68005 8.32999 9.02630 9.15956 9.40651 9.79728 10.61436 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.007970 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.004676 B = 3512.441200 C = 4748.742709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.491 3.509 4 O -0.515 6.515 5 C 0.152 3.848 6 N -0.428 5.428 7 C -0.314 4.314 8 H 0.112 0.888 9 C 0.038 3.962 10 N -0.889 5.889 11 Si 0.927 3.073 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.502 3.498 16 O -0.595 6.595 17 C -0.130 4.130 18 C -0.107 4.107 19 C -0.109 4.109 20 C -0.121 4.121 21 C -0.105 4.105 22 C -0.111 4.111 23 C -0.110 4.110 24 H 0.085 0.915 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.140 0.860 28 H 0.075 0.925 29 H 0.271 0.729 30 H 0.114 0.886 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.958 2.896 2.335 5.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.333 3.667 4 O -0.401 6.401 5 C 0.027 3.973 6 N -0.146 5.146 7 C -0.441 4.441 8 H 0.130 0.870 9 C -0.165 4.165 10 N -0.530 5.530 11 Si 0.754 3.246 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C 0.292 3.708 16 O -0.481 6.481 17 C -0.151 4.151 18 C -0.108 4.108 19 C -0.166 4.166 20 C -0.178 4.178 21 C -0.105 4.105 22 C -0.168 4.168 23 C -0.167 4.167 24 H 0.103 0.897 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.157 0.843 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.526 2.817 2.687 5.252 hybrid contribution -0.626 0.579 -1.169 1.447 sum 2.900 3.396 1.518 4.717 Atomic orbital electron populations 1.22910 0.79014 1.01720 1.01443 1.86466 1.21390 1.35575 1.85637 1.24001 0.92388 0.80374 0.69956 1.90503 1.66740 1.36486 1.46401 1.20687 0.86892 0.85772 1.03985 1.43382 1.57520 1.08192 1.05478 1.19951 1.27397 1.12307 0.84469 0.87033 1.25287 0.94630 0.96361 1.00178 1.69616 1.37361 1.17771 1.28229 0.85847 0.78099 0.79834 0.80787 1.19167 1.20780 1.20761 1.19290 0.81009 0.87298 0.83173 1.90488 1.57618 1.68293 1.31746 1.22373 0.93292 0.95334 1.04073 1.21672 1.01809 0.96511 0.90768 1.21307 1.00986 0.94254 1.00098 1.21525 0.98170 1.00217 0.97897 1.21627 0.96875 0.97235 0.94797 1.21374 0.97219 0.97659 1.00507 1.21319 1.01219 0.94713 0.99480 0.89654 0.93273 0.92834 0.84256 0.90701 0.91820 0.86796 0.92568 0.92595 0.92712 0.89455 0.93750 0.93132 0.92065 0.93426 0.91400 0.92647 0.92783 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.37 -8.25 10.57 -39.26 -0.41 -8.66 16 3 C 0.49 12.33 5.93 36.00 0.21 12.54 16 4 O -0.52 -14.43 15.97 -18.76 -0.30 -14.73 16 5 C 0.15 3.68 5.28 -5.20 -0.03 3.65 16 6 N -0.43 -10.54 1.73 -116.10 -0.20 -10.74 16 7 C -0.31 -7.65 8.16 -14.94 -0.12 -7.77 16 8 H 0.11 2.57 4.89 -52.48 -0.26 2.31 16 9 C 0.04 0.92 5.41 -17.47 -0.09 0.83 16 10 N -0.89 -22.61 8.23 55.50 0.46 -22.16 16 11 Si 0.93 19.67 29.56 -169.99 -5.03 14.65 16 12 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 13 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 C 0.50 12.07 5.05 -10.98 -0.06 12.01 16 16 O -0.60 -15.38 14.00 5.55 0.08 -15.31 16 17 C -0.13 -2.66 4.34 -91.77 -0.40 -3.06 16 18 C -0.11 -1.85 2.70 -154.47 -0.42 -2.26 16 19 C -0.11 -1.55 8.97 37.16 0.33 -1.21 16 20 C -0.12 -2.11 8.35 37.16 0.31 -1.80 16 21 C -0.10 -1.81 1.57 -154.47 -0.24 -2.06 16 22 C -0.11 -1.91 7.37 37.16 0.27 -1.64 16 23 C -0.11 -1.63 8.82 37.16 0.33 -1.30 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 26 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 27 H 0.14 3.38 6.24 -51.93 -0.32 3.06 16 28 H 0.08 1.73 7.36 -51.93 -0.38 1.35 16 29 H 0.27 6.67 8.32 -40.82 -0.34 6.33 16 30 H 0.11 2.37 7.94 -51.93 -0.41 1.95 16 31 H 0.06 0.75 7.86 -51.93 -0.41 0.34 16 32 H 0.06 0.69 7.79 -51.93 -0.40 0.29 16 33 H 0.05 0.76 7.87 -51.93 -0.41 0.35 16 34 H 0.09 1.78 5.04 -51.93 -0.26 1.52 16 35 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 36 H 0.05 0.83 7.88 -51.93 -0.41 0.42 16 37 H 0.06 1.02 7.71 -51.93 -0.40 0.62 16 38 H 0.05 0.72 7.81 -51.93 -0.41 0.32 16 39 H 0.07 1.35 5.74 -51.93 -0.30 1.05 16 40 H 0.05 0.80 7.90 -51.93 -0.41 0.39 16 41 H 0.05 0.69 7.85 -51.93 -0.41 0.28 16 42 H 0.06 0.89 7.88 -51.93 -0.41 0.48 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -29.80 332.22 -5.64 -35.44 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.41 Total: 6.71 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 1.17 Total: 9.79 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.26 Total: -32.90 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -0.64 Total: -38.70 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.80 -5.64 -35.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073848243.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.851 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds