Wall clock time and date at job start Tue Mar 31 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 117.00139 * 2 1 4 4 O 1.20833 * 119.99552 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00185 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47070 * 180.02562 * 5 3 2 7 7 C 1.37095 * 119.99775 * 269.99919 * 6 5 3 8 8 H 1.08006 * 120.00214 * 202.38287 * 7 6 5 9 9 C 1.38947 * 120.00250 * 22.38828 * 7 6 5 10 10 N 1.31414 * 120.00140 * 351.59382 * 9 7 6 11 11 Si 1.86803 * 120.00347 * 171.59638 * 9 7 6 12 12 H 1.48502 * 109.46747 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47229 * 119.99810 * 11 9 7 14 14 H 1.48500 * 109.46913 * 240.00202 * 11 9 7 15 15 C 1.34775 * 120.00032 * 90.00640 * 6 5 3 16 16 O 1.21289 * 119.99913 * 4.80049 * 15 6 5 17 17 C 1.50706 * 119.99980 * 184.80739 * 15 6 5 18 18 C 1.52996 * 117.49830 * 220.56362 * 17 15 6 19 19 C 1.52999 * 117.49622 * 215.00273 * 18 17 15 20 20 C 1.53007 * 117.49784 * 0.02562 * 18 17 15 21 21 C 1.52997 * 117.49702 * 289.22543 * 17 15 6 22 22 C 1.53006 * 117.49933 * 359.97436 * 21 17 15 23 23 C 1.52997 * 117.50065 * 144.97393 * 21 17 15 24 24 H 1.09002 * 109.46711 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47116 * 300.00082 * 1 2 3 26 26 H 1.08999 * 109.46834 * 60.00151 * 1 2 3 27 27 H 1.08998 * 109.46715 * 60.00282 * 5 3 2 28 28 H 1.08998 * 109.47175 * 300.00113 * 5 3 2 29 29 H 0.96997 * 120.00111 * 185.01381 * 10 9 7 30 30 H 1.09000 * 115.55046 * 74.89112 * 17 15 6 31 31 H 1.08999 * 109.47272 * 116.12461 * 19 18 17 32 32 H 1.09001 * 109.46833 * 236.11677 * 19 18 17 33 33 H 1.08989 * 109.47302 * 356.12176 * 19 18 17 34 34 H 1.08994 * 109.46982 * 8.61019 * 20 18 17 35 35 H 1.08997 * 109.46605 * 128.61020 * 20 18 17 36 36 H 1.08996 * 109.47166 * 248.60976 * 20 18 17 37 37 H 1.08999 * 109.46864 * 115.57058 * 22 21 17 38 38 H 1.09002 * 109.46515 * 235.56966 * 22 21 17 39 39 H 1.09005 * 109.46946 * 355.56827 * 22 21 17 40 40 H 1.09004 * 109.46917 * 8.60573 * 23 21 17 41 41 H 1.09002 * 109.47095 * 128.60474 * 23 21 17 42 42 H 1.08992 * 109.47215 * 248.60507 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.1765 3.3374 -1.1860 8 1 4.8069 4.2136 -1.2209 9 6 3.5627 2.8767 -2.3443 10 7 2.9326 1.7235 -2.3400 11 14 3.6333 3.8965 -3.9078 12 1 4.3962 5.1444 -3.6508 13 1 4.3054 3.1163 -4.9777 14 1 2.2539 4.2398 -4.3375 15 6 4.1724 3.3257 1.1685 16 8 4.0854 2.7219 2.2169 17 6 4.4937 4.7981 1.1713 18 6 5.5474 5.2894 2.1658 19 6 5.3456 6.6753 2.7816 20 6 6.1947 4.2481 3.0811 21 6 5.8771 5.2202 0.6726 22 6 6.8288 4.1151 0.2099 23 6 5.9799 6.5420 -0.0909 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9563 0.7806 -0.8892 28 1 3.9557 0.7809 0.8908 29 1 2.5670 1.3675 -3.1649 30 1 3.6567 5.4623 0.9556 31 1 5.2019 6.5775 3.8577 32 1 6.2239 7.2908 2.5869 33 1 4.4673 7.1452 2.3391 34 1 5.8934 3.2493 2.7653 35 1 7.2795 4.3362 3.0214 36 1 5.8725 4.4169 4.1086 37 1 7.0301 4.2314 -0.8550 38 1 7.7637 4.1843 0.7662 39 1 6.3706 3.1424 0.3890 40 1 5.0289 7.0713 -0.0306 41 1 6.7659 7.1557 0.3493 42 1 6.2182 6.3408 -1.1353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073848243.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:24 Heat of formation + Delta-G solvation = -103.189031 kcal Electronic energy + Delta-G solvation = -24498.600841 eV Core-core repulsion = 21058.740357 eV Total energy + Delta-G solvation = -3439.860484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.70158 -40.84925 -38.76098 -37.23760 -36.48883 -33.41476 -31.99581 -30.57151 -29.36790 -28.83246 -27.80366 -27.02841 -26.33725 -23.22033 -21.67856 -20.73801 -18.78039 -18.51731 -18.33484 -17.79698 -17.29109 -16.93341 -16.38903 -16.07807 -15.96704 -15.48416 -14.96441 -14.43734 -14.32170 -14.13294 -13.87046 -13.51857 -13.35171 -13.31367 -13.14863 -13.09350 -12.92233 -12.86172 -12.80329 -12.57603 -12.54807 -12.39253 -12.25229 -12.04175 -11.65793 -11.58929 -11.41752 -10.92455 -10.59023 -10.36609 -10.01210 -9.78696 -8.27424 -5.92067 1.37483 1.45913 1.57156 1.68161 1.83817 2.21381 2.35855 2.68718 3.02782 3.19930 3.81942 3.86001 3.93188 4.26334 4.29210 4.31074 4.33625 4.38331 4.50381 4.67669 4.70662 4.72230 4.81319 4.91230 4.94582 5.00776 5.05470 5.11347 5.15933 5.16876 5.19932 5.24161 5.25459 5.45621 5.50931 5.57238 5.65316 5.71605 5.82755 6.43831 7.13382 7.22473 7.54447 7.93548 8.74387 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.007970 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.004676 B = 3512.441200 C = 4748.742709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.492 3.508 4 O -0.552 6.552 5 C 0.151 3.849 6 N -0.438 5.438 7 C -0.319 4.319 8 H 0.124 0.876 9 C -0.008 4.008 10 N -0.911 5.911 11 Si 0.986 3.014 12 H -0.249 1.249 13 H -0.275 1.275 14 H -0.297 1.297 15 C 0.496 3.504 16 O -0.624 6.624 17 C -0.166 4.166 18 C -0.095 4.095 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.091 4.091 22 C -0.109 4.109 23 C -0.108 4.108 24 H 0.134 0.866 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.136 0.864 28 H 0.076 0.924 29 H 0.268 0.732 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.035 0.965 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.220 4.589 2.078 7.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.292 6.292 3 C 0.336 3.664 4 O -0.441 6.441 5 C 0.025 3.975 6 N -0.155 5.155 7 C -0.446 4.446 8 H 0.141 0.859 9 C -0.207 4.207 10 N -0.553 5.553 11 Si 0.811 3.189 12 H -0.172 1.172 13 H -0.200 1.200 14 H -0.224 1.224 15 C 0.287 3.713 16 O -0.512 6.512 17 C -0.187 4.187 18 C -0.096 4.096 19 C -0.163 4.163 20 C -0.177 4.177 21 C -0.091 4.091 22 C -0.166 4.166 23 C -0.165 4.165 24 H 0.152 0.848 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.153 0.847 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.805 4.496 2.434 7.015 hybrid contribution -1.066 -0.064 -1.021 1.477 sum 3.739 4.432 1.413 5.968 Atomic orbital electron populations 1.23276 0.76412 1.04815 1.01024 1.86431 1.23920 1.33909 1.84975 1.24108 0.92691 0.80593 0.68978 1.90467 1.67556 1.37760 1.48312 1.20672 0.86815 0.86301 1.03698 1.43577 1.57631 1.08288 1.06044 1.20248 1.27474 1.12472 0.84412 0.85906 1.26088 0.94500 0.97214 1.02929 1.69713 1.38144 1.18914 1.28548 0.84946 0.77279 0.79239 0.77472 1.17196 1.20031 1.22395 1.19926 0.80060 0.88800 0.82484 1.90448 1.58693 1.69449 1.32604 1.22332 0.94876 0.92617 1.08882 1.21880 0.99073 0.97781 0.90836 1.21335 1.02318 0.92385 1.00274 1.21472 0.99677 0.98374 0.98146 1.21788 0.93844 0.98164 0.95314 1.21353 0.97941 0.96057 1.01285 1.21355 1.02413 0.93406 0.99343 0.84795 0.93178 0.93806 0.84670 0.90567 0.92163 0.87663 0.91857 0.89903 0.92570 0.92929 0.91356 0.92559 0.91501 0.91167 0.94617 0.92498 0.89848 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.56 113.37 1.20 2.54 16 2 O -0.38 -16.77 10.57 -51.42 -0.54 -17.31 16 3 C 0.49 25.46 5.93 71.23 0.42 25.89 16 4 O -0.55 -31.84 15.97 21.94 0.35 -31.49 16 5 C 0.15 7.57 5.28 85.63 0.45 8.02 16 6 N -0.44 -22.18 1.73 -639.61 -1.11 -23.28 16 7 C -0.32 -15.68 8.16 84.04 0.69 -15.00 16 8 H 0.12 5.60 4.89 -2.91 -0.01 5.58 16 9 C -0.01 -0.42 5.41 84.93 0.46 0.04 16 10 N -0.91 -47.24 8.23 21.66 0.18 -47.06 16 11 Si 0.99 39.97 29.56 68.60 2.03 42.00 16 12 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 13 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 14 H -0.30 -12.74 7.11 99.48 0.71 -12.03 16 15 C 0.50 24.49 5.05 87.66 0.44 24.93 16 16 O -0.62 -33.46 14.00 -3.06 -0.04 -33.50 16 17 C -0.17 -6.79 4.34 -11.54 -0.05 -6.84 16 18 C -0.10 -3.11 2.70 -52.16 -0.14 -3.25 16 19 C -0.11 -2.67 8.97 71.98 0.65 -2.02 16 20 C -0.12 -4.02 8.35 71.98 0.60 -3.42 16 21 C -0.09 -2.95 1.57 -52.16 -0.08 -3.04 16 22 C -0.11 -3.62 7.37 71.98 0.53 -3.09 16 23 C -0.11 -2.82 8.82 71.98 0.64 -2.19 16 24 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 25 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 26 H 0.04 1.61 8.13 -2.39 -0.02 1.60 16 27 H 0.14 6.83 6.24 -2.39 -0.01 6.82 16 28 H 0.08 3.70 7.36 -2.39 -0.02 3.69 16 29 H 0.27 13.45 8.32 -92.71 -0.77 12.68 16 30 H 0.11 4.42 7.94 -2.39 -0.02 4.40 16 31 H 0.06 1.50 7.86 -2.39 -0.02 1.48 16 32 H 0.08 1.66 7.79 -2.39 -0.02 1.64 16 33 H 0.06 1.40 7.87 -2.39 -0.02 1.39 16 34 H 0.05 2.17 5.04 -2.39 -0.01 2.15 16 35 H 0.07 1.92 7.86 -2.39 -0.02 1.90 16 36 H 0.06 1.78 7.88 -2.39 -0.02 1.76 16 37 H 0.07 2.10 7.71 -2.39 -0.02 2.08 16 38 H 0.07 1.97 7.81 -2.39 -0.02 1.95 16 39 H 0.03 1.41 5.74 -2.38 -0.01 1.40 16 40 H 0.06 1.48 7.90 -2.39 -0.02 1.46 16 41 H 0.08 1.71 7.85 -2.39 -0.02 1.69 16 42 H 0.06 1.60 7.88 -2.39 -0.02 1.58 16 Total: -1.00 -66.06 332.22 7.68 -58.38 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 1.01 Total: 29.70 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 5.80 Total: 22.58 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -0.93 Total: -70.34 kcal Atomic # 8 Polarization: -82.07 SS G_CDS: -0.24 Total: -82.31 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -66.06 7.68 -58.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073848243.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.809 kcal (2) G-P(sol) polarization free energy of solvation -66.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds