Wall clock time and date at job start Tue Mar 31 2020 05:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00220 * 2 1 4 4 H 1.48500 * 109.47049 * 270.00587 * 3 2 1 5 5 H 1.48500 * 109.46808 * 30.00531 * 3 2 1 6 6 H 1.48502 * 109.47245 * 150.00254 * 3 2 1 7 7 C 1.37884 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99316 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00332 * 359.97438 * 7 2 1 10 10 C 1.52989 * 109.47512 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47566 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47317 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99996 * 179.97438 * 12 11 10 14 14 O 1.21277 * 120.00100 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00068 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.46959 * 60.00140 * 15 13 12 17 17 C 1.53000 * 109.47083 * 299.99925 * 15 13 12 18 18 C 1.52996 * 109.47328 * 300.00241 * 17 15 13 19 19 C 1.53002 * 109.46891 * 299.99597 * 18 17 15 20 20 C 1.52997 * 109.46978 * 60.00410 * 19 18 17 21 21 C 1.52997 * 109.47078 * 180.02562 * 15 13 12 22 22 H 1.08998 * 109.47533 * 179.97438 * 21 15 13 23 23 C 1.50697 * 109.47466 * 299.99980 * 21 15 13 24 24 O 1.20826 * 119.99685 * 0.02562 * 23 21 15 25 25 O 1.34232 * 120.00079 * 179.97438 * 23 21 15 26 26 H 0.97001 * 119.99949 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47002 * 59.99333 * 9 7 2 28 28 H 1.09001 * 109.47138 * 300.00263 * 9 7 2 29 29 H 1.09002 * 109.47371 * 59.99755 * 10 9 7 30 30 H 1.09001 * 109.47294 * 300.00364 * 10 9 7 31 31 H 1.09002 * 109.47097 * 60.00082 * 11 10 9 32 32 H 1.09004 * 109.47006 * 300.00100 * 11 10 9 33 33 H 0.96998 * 120.00098 * 359.97438 * 12 11 10 34 34 H 1.09004 * 109.46724 * 60.00424 * 17 15 13 35 35 H 1.09001 * 109.47194 * 179.97438 * 17 15 13 36 36 H 1.09004 * 109.47108 * 179.97438 * 18 17 15 37 37 H 1.08992 * 109.47554 * 59.99639 * 18 17 15 38 38 H 1.09001 * 109.47142 * 300.00176 * 19 18 17 39 39 H 1.09002 * 109.47097 * 180.02562 * 19 18 17 40 40 H 1.09000 * 109.47140 * 179.97438 * 20 19 18 41 41 H 1.09001 * 109.47375 * 59.99908 * 20 19 18 42 42 H 0.96708 * 116.99537 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9872 -0.0012 12 7 2.4321 -6.1007 -0.0018 13 6 1.9828 -7.3713 -0.0009 14 8 0.7905 -7.5929 0.0000 15 6 2.9621 -8.5168 -0.0021 16 1 3.5900 -8.4589 0.8870 17 6 3.8398 -8.4360 -1.2527 18 6 2.9584 -8.5173 -2.5006 19 6 2.1934 -9.8423 -2.4992 20 6 1.3156 -9.9231 -1.2487 21 6 2.1970 -9.8418 -0.0013 22 1 2.9053 -10.6703 -0.0027 23 6 1.3321 -9.9217 1.2301 24 8 1.3276 -9.0120 2.0253 25 8 0.5658 -11.0031 1.4430 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8902 28 1 0.6246 -2.5571 0.8897 29 1 2.8725 -3.6048 0.8877 30 1 2.8711 -3.6040 -0.8922 31 1 0.8525 -5.0448 -0.8905 32 1 0.8544 -5.0450 0.8895 33 1 3.3857 -5.9235 -0.0029 34 1 4.3849 -7.4921 -1.2536 35 1 4.5484 -9.2643 -1.2533 36 1 3.5837 -8.4593 -3.3915 37 1 2.2501 -7.6889 -2.4997 38 1 2.9017 -10.6708 -2.5001 39 1 1.5658 -9.9004 -3.3885 40 1 0.7703 -10.8668 -1.2479 41 1 0.6073 -9.0946 -1.2478 42 1 0.0278 -11.0086 2.2466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079864698.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:22 Heat of formation + Delta-G solvation = -163.811555 kcal Electronic energy + Delta-G solvation = -22919.626309 eV Core-core repulsion = 19477.137035 eV Total energy + Delta-G solvation = -3442.489274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.24807 -39.40345 -37.29290 -36.10312 -35.27910 -33.36024 -31.79243 -31.51193 -30.59795 -26.81634 -24.91026 -23.60819 -22.82567 -21.29029 -21.06976 -20.59415 -19.09088 -18.00031 -17.09509 -16.54098 -16.40827 -15.65626 -15.45166 -15.34309 -14.79416 -14.44937 -14.34474 -13.91177 -13.70645 -13.42068 -12.89964 -12.62618 -12.43214 -12.35336 -12.21423 -11.79214 -11.72943 -11.44225 -11.38367 -11.01656 -10.90760 -10.79965 -10.68981 -10.57468 -10.44070 -10.26203 -9.83448 -9.65768 -9.24739 -9.07611 -8.65492 -8.35902 -6.00462 -4.03506 2.26360 2.88414 2.98960 3.31508 3.37631 3.39996 3.44264 4.18085 4.44709 4.48204 4.57137 4.81702 4.89504 4.97523 5.09467 5.11034 5.25119 5.30560 5.35250 5.44054 5.60587 5.66957 5.79146 5.82380 5.84421 5.93293 5.96237 6.04819 6.21114 6.26861 6.49654 6.59822 6.64437 6.89182 7.04597 7.65373 7.78419 7.79534 7.90252 7.98546 8.39444 8.51929 9.03227 9.60532 11.10875 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027808 B = 0.003236 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.676900 B = 8651.387254 C = 9130.754199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.119 3.881 12 N -0.725 5.725 13 C 0.526 3.474 14 O -0.537 6.537 15 C -0.099 4.099 16 H 0.103 0.897 17 C -0.109 4.109 18 C -0.128 4.128 19 C -0.115 4.115 20 C -0.127 4.127 21 C -0.054 4.054 22 H 0.110 0.890 23 C 0.486 3.514 24 O -0.502 6.502 25 O -0.521 6.521 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.396 0.604 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.737 -24.021 -2.731 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.004 4.004 12 N -0.375 5.375 13 C 0.312 3.688 14 O -0.415 6.415 15 C -0.121 4.121 16 H 0.121 0.879 17 C -0.147 4.147 18 C -0.165 4.165 19 C -0.153 4.153 20 C -0.164 4.164 21 C -0.074 4.074 22 H 0.127 0.873 23 C 0.328 3.672 24 O -0.388 6.388 25 O -0.333 6.333 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.230 0.770 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 6.947 -23.772 -2.859 24.930 hybrid contribution 0.535 1.098 0.689 1.403 sum 7.481 -22.673 -2.169 23.974 Atomic orbital electron populations 1.69968 1.06067 1.26659 1.50596 1.25034 0.94854 0.99297 0.95298 0.86581 0.79813 0.83446 0.78074 1.20666 1.21210 1.19886 1.21209 0.92981 0.90960 1.50878 0.92660 1.19025 0.93869 0.90883 0.97618 1.21877 0.99733 0.93435 1.00774 1.21598 0.91870 0.85104 1.01817 1.46118 1.10565 1.05868 1.74995 1.20097 0.89287 0.83823 0.75585 1.90590 1.16960 1.84316 1.49644 1.21299 0.97092 0.92573 1.01126 0.87912 1.21549 0.97226 1.03245 0.92685 1.21628 0.98957 0.98450 0.97510 1.21521 0.98594 0.97418 0.97730 1.21826 0.98470 1.04764 0.91375 1.20744 0.96345 0.98456 0.91810 0.87253 1.23204 0.78183 0.78725 0.87105 1.90737 1.63686 1.37666 1.46683 1.84485 1.56005 1.44129 1.48665 0.92942 0.96328 0.96300 0.92793 0.92796 0.91966 0.91909 0.77047 0.90597 0.90519 0.91261 0.91385 0.91894 0.91367 0.90938 0.88109 0.73429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.41 5.27 -26.74 -0.14 -2.55 16 11 C 0.12 2.18 5.67 -4.04 -0.02 2.15 16 12 N -0.73 -10.74 5.45 -60.29 -0.33 -11.06 16 13 C 0.53 7.85 4.63 -10.99 -0.05 7.80 16 14 O -0.54 -9.92 11.85 -15.89 -0.19 -10.10 16 15 C -0.10 -1.05 2.19 -91.77 -0.20 -1.25 16 16 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 17 C -0.11 -0.85 5.35 -26.73 -0.14 -1.00 16 18 C -0.13 -1.11 5.70 -26.73 -0.15 -1.27 16 19 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 20 C -0.13 -1.30 4.86 -26.76 -0.13 -1.43 16 21 C -0.05 -0.54 2.38 -91.80 -0.22 -0.76 16 22 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 23 C 0.49 6.14 6.64 36.00 0.24 6.37 16 24 O -0.50 -8.26 14.92 -25.90 -0.39 -8.65 16 25 O -0.52 -5.14 13.32 -39.26 -0.52 -5.66 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.40 4.75 7.89 -40.82 -0.32 4.43 16 34 H 0.08 0.55 7.56 -51.93 -0.39 0.16 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.77 7.22 -51.93 -0.37 0.40 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 41 H 0.10 1.38 5.51 -51.93 -0.29 1.09 16 42 H 0.41 2.54 9.10 45.56 0.41 2.96 16 LS Contribution 336.97 15.07 5.08 5.08 Total: -1.00 -35.28 336.97 -8.16 -43.44 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.99 Total: 2.78 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.53 Total: -6.07 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.41 Total: -37.44 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -1.10 Total: -24.42 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.28 -8.16 -43.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079864698.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.376 kcal (2) G-P(sol) polarization free energy of solvation -35.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds