Wall clock time and date at job start Tue Mar 31 2020 05:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47346 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47368 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99746 * 179.97438 * 12 11 10 14 14 O 1.21276 * 119.99983 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99614 * 179.97438 * 13 12 11 16 16 H 1.09000 * 109.47247 * 300.00115 * 15 13 12 17 17 C 1.53000 * 109.47083 * 59.99979 * 15 13 12 18 18 C 1.53001 * 109.46886 * 60.00443 * 17 15 13 19 19 C 1.52996 * 109.47486 * 59.99437 * 18 17 15 20 20 C 1.52992 * 109.47224 * 300.00512 * 19 18 17 21 21 C 1.52996 * 109.47235 * 180.02562 * 15 13 12 22 22 H 1.09001 * 109.47367 * 179.97438 * 21 15 13 23 23 C 1.50701 * 109.46990 * 59.99831 * 21 15 13 24 24 O 1.20823 * 120.00304 * 0.02562 * 23 21 15 25 25 O 1.34227 * 119.99895 * 179.97438 * 23 21 15 26 26 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 28 28 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 29 29 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 30 30 H 1.08996 * 109.47407 * 59.99213 * 10 9 7 31 31 H 1.09000 * 109.46870 * 299.99817 * 11 10 9 32 32 H 1.09004 * 109.47108 * 59.99711 * 11 10 9 33 33 H 0.97003 * 119.99531 * 0.02562 * 12 11 10 34 34 H 1.09001 * 109.46741 * 180.02562 * 17 15 13 35 35 H 1.08992 * 109.47399 * 299.99938 * 17 15 13 36 36 H 1.09001 * 109.46652 * 299.99655 * 18 17 15 37 37 H 1.09004 * 109.47086 * 179.97438 * 18 17 15 38 38 H 1.08996 * 109.47134 * 179.97438 * 19 18 17 39 39 H 1.09001 * 109.46997 * 60.00430 * 19 18 17 40 40 H 1.09001 * 109.47066 * 299.99875 * 20 19 18 41 41 H 1.09002 * 109.47103 * 179.97438 * 20 19 18 42 42 H 0.96700 * 117.00303 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 6 5.5514 -2.6368 -0.0014 12 7 6.0397 -4.0181 -0.0022 13 6 7.3647 -4.2643 -0.0029 14 8 8.1528 -3.3425 -0.0024 15 6 7.8670 -5.6852 -0.0030 16 1 7.5041 -6.1989 0.8872 17 6 7.3563 -6.4065 -1.2519 18 6 7.8657 -5.6853 -2.5015 19 6 9.3957 -5.6854 -2.5022 20 6 9.9063 -4.9642 -1.2533 21 6 9.3969 -5.6853 -0.0032 22 1 9.7602 -6.7130 -0.0029 23 6 9.8994 -4.9750 1.2273 24 8 9.1145 -4.5162 2.0229 25 8 11.2191 -4.8529 1.4398 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6798 -0.8895 28 1 3.8745 -0.6809 0.8904 29 1 3.6577 -3.1515 0.8880 30 1 3.6583 -3.1496 -0.8919 31 1 5.9147 -2.1222 -0.8909 32 1 5.9148 -2.1238 0.8891 33 1 5.4092 -4.7553 -0.0029 34 1 7.7192 -7.4343 -1.2518 35 1 6.2663 -6.4064 -1.2514 36 1 7.5024 -4.6576 -2.5013 37 1 7.5023 -6.1995 -3.3913 38 1 9.7586 -5.1720 -3.3926 39 1 9.7590 -6.7130 -2.5024 40 1 9.5430 -3.9365 -1.2531 41 1 10.9963 -4.9646 -1.2536 42 1 11.4935 -4.3890 2.2426 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079864710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:25 Heat of formation + Delta-G solvation = -160.376849 kcal Electronic energy + Delta-G solvation = -22979.759856 eV Core-core repulsion = 19537.419523 eV Total energy + Delta-G solvation = -3442.340334 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29847 -39.46168 -37.35593 -36.15110 -35.39791 -33.37729 -31.87865 -31.55446 -30.82049 -27.23911 -24.97585 -23.61179 -22.71471 -21.32632 -21.11275 -20.52723 -19.14552 -18.04627 -17.16334 -16.77123 -16.58732 -15.71987 -15.53597 -15.48457 -14.89325 -14.43006 -14.21514 -13.93592 -13.73204 -13.47885 -12.95343 -12.71104 -12.64440 -12.49979 -12.34097 -11.97278 -11.88027 -11.51722 -11.43242 -11.07639 -11.04007 -10.92180 -10.80502 -10.48307 -10.30805 -10.11980 -9.89190 -9.74195 -9.34821 -9.21108 -8.74895 -8.54581 -6.05570 -4.04047 2.21803 2.82049 2.93662 3.32173 3.35441 3.39633 3.44099 4.13860 4.42885 4.45378 4.53002 4.77743 4.85380 4.92261 5.05354 5.07057 5.21131 5.26486 5.28715 5.39701 5.56219 5.61739 5.65961 5.70528 5.79573 5.89298 5.92215 6.00531 6.05890 6.20996 6.45010 6.45307 6.48409 6.75086 6.84204 7.24752 7.38142 7.69634 7.78686 7.85644 8.43444 8.51634 8.98359 9.56923 11.07721 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.003487 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.210410 B = 8027.373970 C = 8483.820477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.288 1.288 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.725 5.725 13 C 0.527 3.473 14 O -0.538 6.538 15 C -0.099 4.099 16 H 0.104 0.896 17 C -0.110 4.110 18 C -0.128 4.128 19 C -0.115 4.115 20 C -0.127 4.127 21 C -0.055 4.055 22 H 0.110 0.890 23 C 0.487 3.513 24 O -0.502 6.502 25 O -0.521 6.521 26 H 0.263 0.737 27 H 0.018 0.982 28 H 0.014 0.986 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.398 0.602 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.680 -16.304 -2.770 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.214 1.214 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.006 4.006 12 N -0.375 5.375 13 C 0.313 3.687 14 O -0.416 6.416 15 C -0.121 4.121 16 H 0.122 0.878 17 C -0.147 4.147 18 C -0.165 4.165 19 C -0.153 4.153 20 C -0.164 4.164 21 C -0.074 4.074 22 H 0.128 0.872 23 C 0.328 3.672 24 O -0.388 6.388 25 O -0.333 6.333 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.231 0.769 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.091 0.909 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 21.726 -15.573 -2.905 26.889 hybrid contribution 0.128 0.877 0.724 1.145 sum 21.854 -14.696 -2.181 26.426 Atomic orbital electron populations 1.69916 1.06309 1.26932 1.51089 1.25025 0.94744 0.99222 0.94476 0.86777 0.80388 0.83539 0.78611 1.20239 1.18928 1.21357 1.21104 0.89326 0.94497 1.51006 0.91011 1.19503 0.97241 0.91552 0.96617 1.21697 0.90767 1.00962 1.01653 1.21606 0.95975 0.81304 1.01761 1.46076 1.06605 1.09792 1.75064 1.20112 0.82557 0.90549 0.75466 1.90587 1.54975 1.46349 1.49681 1.21296 0.94169 0.95376 1.01220 0.87843 1.21554 1.01238 0.99321 0.92631 1.21629 0.95910 1.01439 0.97552 1.21521 0.95510 1.00553 0.97708 1.21838 1.00966 1.02220 0.91376 1.20766 0.94382 1.00439 0.91815 0.87192 1.23202 0.79831 0.77054 0.87091 1.90734 1.56682 1.44784 1.46641 1.84483 1.26593 1.73461 1.48724 0.92713 0.96359 0.96776 0.92166 0.92152 0.91976 0.91923 0.76858 0.90456 0.90532 0.91442 0.91208 0.91365 0.91848 0.88172 0.90937 0.73425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.15 5.27 -26.73 -0.14 -2.29 16 11 C 0.12 2.00 5.67 -4.04 -0.02 1.97 16 12 N -0.72 -10.21 5.45 -60.30 -0.33 -10.54 16 13 C 0.53 7.54 4.63 -10.99 -0.05 7.48 16 14 O -0.54 -9.54 11.85 -15.88 -0.19 -9.72 16 15 C -0.10 -1.00 2.19 -91.77 -0.20 -1.20 16 16 H 0.10 0.97 8.10 -51.93 -0.42 0.55 16 17 C -0.11 -0.82 5.36 -26.73 -0.14 -0.96 16 18 C -0.13 -1.06 5.70 -26.73 -0.15 -1.22 16 19 C -0.12 -0.89 5.92 -26.74 -0.16 -1.05 16 20 C -0.13 -1.24 4.87 -26.71 -0.13 -1.37 16 21 C -0.05 -0.53 2.38 -91.75 -0.22 -0.75 16 22 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 23 C 0.49 5.93 6.64 36.01 0.24 6.17 16 24 O -0.50 -8.03 14.92 -25.90 -0.39 -8.41 16 25 O -0.52 -4.93 13.33 -39.25 -0.52 -5.46 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 28 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.40 4.54 7.89 -40.82 -0.32 4.22 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.53 7.56 -51.93 -0.39 0.14 16 36 H 0.07 0.73 7.22 -51.93 -0.37 0.36 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 1.32 5.51 -51.93 -0.29 1.03 16 41 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 42 H 0.41 2.38 9.10 45.56 0.41 2.80 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -35.64 333.39 -7.78 -43.42 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.96 Total: 2.44 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.52 Total: -6.91 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.45 Total: -37.73 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -1.10 Total: -23.59 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.64 -7.78 -43.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079864710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.954 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds