Wall clock time and date at job start Tue Mar 31 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 C 1.53000 * 109.46982 * 240.00135 * 2 1 3 5 5 C 1.50699 * 109.47177 * 120.00066 * 2 1 3 6 6 O 1.21281 * 119.99998 * 359.97438 * 5 2 1 7 7 N 1.34777 * 120.00150 * 179.97438 * 5 2 1 8 8 C 1.46494 * 120.00176 * 179.97438 * 7 5 2 9 9 C 1.50704 * 109.47170 * 180.02562 * 8 7 5 10 10 O 1.20829 * 119.99895 * 355.15807 * 9 8 7 11 11 O 1.34232 * 120.00026 * 175.15850 * 9 8 7 12 12 C 1.45197 * 116.99714 * 185.09794 * 11 9 8 13 13 C 1.53001 * 109.47051 * 184.25016 * 12 11 9 14 14 C 1.50704 * 115.54418 * 64.76453 * 13 12 11 15 15 H 1.08004 * 120.00090 * 266.61162 * 14 13 12 16 16 C 1.37875 * 120.00377 * 86.61467 * 14 13 12 17 17 N 1.31512 * 120.00523 * 178.63913 * 16 14 13 18 18 Si 1.86808 * 119.99800 * 358.64512 * 16 14 13 19 19 H 1.48501 * 109.47123 * 90.94077 * 18 16 14 20 20 H 1.48498 * 109.47087 * 210.94311 * 18 16 14 21 21 H 1.48507 * 109.46614 * 330.94031 * 18 16 14 22 22 C 1.52996 * 117.50269 * 279.09372 * 13 12 11 23 23 C 1.52999 * 117.50443 * 210.43053 * 13 12 11 24 24 H 1.09007 * 109.46477 * 299.99904 * 1 2 3 25 25 H 1.08997 * 109.47463 * 59.99391 * 1 2 3 26 26 H 1.08997 * 109.47085 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47733 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47338 * 300.00395 * 3 2 1 29 29 H 1.08999 * 109.47131 * 59.99984 * 3 2 1 30 30 H 1.09003 * 109.46947 * 300.00192 * 4 2 1 31 31 H 1.08993 * 109.47105 * 59.99944 * 4 2 1 32 32 H 1.08997 * 109.47037 * 180.02562 * 4 2 1 33 33 H 0.97008 * 119.99543 * 0.02562 * 7 5 2 34 34 H 1.08995 * 109.46924 * 60.00326 * 8 7 5 35 35 H 1.08999 * 109.47255 * 300.00325 * 8 7 5 36 36 H 1.08994 * 109.47351 * 304.25753 * 12 11 9 37 37 H 1.09005 * 109.46876 * 64.26000 * 12 11 9 38 38 H 0.96991 * 120.00197 * 179.97438 * 17 16 14 39 39 H 1.08998 * 117.49801 * 359.97438 * 22 13 12 40 40 H 1.09008 * 117.49722 * 145.01796 * 22 13 12 41 41 H 1.08996 * 117.50248 * 214.98735 * 23 13 12 42 42 H 1.09004 * 117.49585 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2442 -1.1709 2.0290 7 7 3.3574 -0.8340 1.4435 8 6 3.8458 -1.5241 2.6399 9 6 5.3528 -1.5242 2.6398 10 8 5.9569 -1.0798 1.6924 11 8 6.0240 -2.0180 3.6922 12 6 7.4695 -1.8828 3.6744 13 6 8.0631 -2.5919 4.8934 14 6 7.8719 -4.0862 4.9329 15 1 7.0256 -4.5088 5.4541 16 6 8.7774 -4.9140 4.3037 17 7 8.6254 -6.2191 4.3608 18 14 10.2204 -4.1817 3.3703 19 1 11.3840 -4.0481 4.2832 20 1 10.5799 -5.0717 2.2372 21 1 9.8443 -2.8432 2.8485 22 6 8.0428 -1.8415 6.2265 23 6 9.3624 -2.0303 5.4742 24 1 -0.3632 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7216 -1.2490 33 1 3.9878 -0.4653 0.8049 34 1 3.4820 -2.5516 2.6405 35 1 3.4829 -1.0097 3.5297 36 1 7.8654 -2.3326 2.7639 37 1 7.7360 -0.8262 3.7033 38 1 9.2623 -6.8013 3.9179 39 1 7.6069 -0.8425 6.2352 40 1 7.8915 -2.4288 7.1323 41 1 10.0788 -2.7416 5.8852 42 1 9.7946 -1.1559 4.9876 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174750029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:37 Heat of formation + Delta-G solvation = -108.834648 kcal Electronic energy + Delta-G solvation = -22465.280465 eV Core-core repulsion = 19025.175169 eV Total energy + Delta-G solvation = -3440.105296 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.61939 -39.81579 -37.30697 -35.90424 -35.69991 -34.58326 -32.15545 -29.08628 -27.66607 -27.42533 -26.82074 -25.27977 -23.02686 -21.77810 -20.74488 -19.77238 -19.23409 -17.43923 -17.19351 -16.45045 -16.32845 -16.14436 -15.42495 -15.34015 -14.87457 -14.24801 -14.10508 -14.04575 -13.68252 -13.25893 -12.78799 -12.67698 -12.59974 -12.50045 -12.27385 -12.20397 -12.15062 -11.99714 -11.25647 -11.22684 -11.20320 -10.97357 -10.64551 -10.44134 -10.27434 -10.07534 -9.89496 -9.69411 -9.31808 -9.10276 -8.64917 -8.64615 -6.16553 -4.20190 2.35186 2.47896 2.55352 3.22772 3.31077 3.33195 3.36446 4.32375 4.34757 4.45785 4.56507 4.65680 4.91768 5.06389 5.12360 5.23121 5.26142 5.30142 5.38126 5.41741 5.51342 5.56279 5.58083 5.63056 5.79359 5.86742 5.88649 5.90688 6.00735 6.02671 6.09091 6.21563 6.35995 6.60852 6.79498 6.97520 7.01644 7.30065 7.63174 7.96631 8.06444 8.44545 8.88569 9.45065 10.95222 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026762 B = 0.003486 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.011228 B = 8029.563461 C = 8178.786339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.143 4.143 5 C 0.525 3.475 6 O -0.537 6.537 7 N -0.720 5.720 8 C 0.124 3.876 9 C 0.454 3.546 10 O -0.522 6.522 11 O -0.324 6.324 12 C 0.108 3.892 13 C -0.007 4.007 14 C -0.484 4.484 15 H 0.082 0.918 16 C 0.077 3.923 17 N -0.894 5.894 18 Si 0.876 3.124 19 H -0.275 1.275 20 H -0.291 1.291 21 H -0.262 1.262 22 C -0.172 4.172 23 C -0.190 4.190 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.411 0.589 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.266 0.734 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.866 14.477 -8.978 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.087 4.087 3 C -0.200 4.200 4 C -0.201 4.201 5 C 0.312 3.688 6 O -0.413 6.413 7 N -0.377 5.377 8 C 0.000 4.000 9 C 0.297 3.703 10 O -0.413 6.413 11 O -0.238 6.238 12 C 0.034 3.966 13 C -0.008 4.008 14 C -0.521 4.521 15 H 0.100 0.900 16 C -0.126 4.126 17 N -0.531 5.531 18 Si 0.704 3.296 19 H -0.201 1.201 20 H -0.218 1.218 21 H -0.186 1.186 22 C -0.209 4.209 23 C -0.227 4.227 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.249 0.751 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.107 14.042 -8.693 19.903 hybrid contribution 1.431 0.404 -0.895 1.736 sum -9.677 14.446 -9.588 19.856 Atomic orbital electron populations 1.21668 0.91723 1.02999 1.02083 1.20804 0.98121 0.96438 0.93357 1.21894 1.01491 0.93640 1.02981 1.21901 1.01584 1.00736 0.95877 1.20589 0.81390 0.79398 0.87457 1.90716 1.55233 1.48386 1.46923 1.45810 1.07840 1.58916 1.25084 1.20645 0.87739 1.01314 0.90345 1.23380 0.91261 0.74413 0.81249 1.90607 1.70398 1.44607 1.35677 1.86534 1.24012 1.71312 1.41902 1.23148 0.74155 0.98096 1.01162 1.19323 0.96085 0.95774 0.89580 1.20231 1.11502 0.85561 1.34820 0.90002 1.25000 0.97589 0.94599 0.95399 1.69879 1.36969 1.02749 1.43496 0.86910 0.83234 0.79582 0.79855 1.20128 1.21787 1.18613 1.22835 1.00388 1.00012 0.97678 1.23010 0.91811 1.02160 1.05732 0.91854 0.91953 0.91793 0.91920 0.91197 0.91920 0.91828 0.91202 0.91841 0.75118 0.86796 0.87175 0.91082 0.93394 0.92435 0.90747 0.89042 0.88694 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 7.76 37.16 0.29 -0.80 16 2 C -0.08 -0.75 0.87 -155.66 -0.14 -0.89 16 3 C -0.14 -1.04 8.37 37.16 0.31 -0.73 16 4 C -0.14 -1.11 8.37 37.16 0.31 -0.79 16 5 C 0.53 6.48 6.48 -10.99 -0.07 6.41 16 6 O -0.54 -8.41 15.98 5.56 0.09 -8.32 16 7 N -0.72 -8.77 5.31 -61.48 -0.33 -9.10 16 8 C 0.12 1.69 6.27 -5.19 -0.03 1.66 16 9 C 0.45 7.71 8.02 36.01 0.29 8.00 16 10 O -0.52 -9.58 15.35 -18.75 -0.29 -9.86 16 11 O -0.32 -6.46 10.15 -39.26 -0.40 -6.86 16 12 C 0.11 2.28 4.99 37.16 0.19 2.46 16 13 C -0.01 -0.15 1.06 -155.66 -0.16 -0.31 16 14 C -0.48 -13.25 9.35 -34.44 -0.32 -13.57 16 15 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 16 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 18 Si 0.88 21.17 24.89 -169.99 -4.23 16.94 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.26 -5.99 5.73 56.52 0.32 -5.66 16 22 C -0.17 -3.37 9.96 -26.70 -0.27 -3.64 16 23 C -0.19 -3.86 7.62 -26.69 -0.20 -4.06 16 24 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.61 8.10 -51.93 -0.42 0.18 16 27 H 0.06 0.45 7.57 -51.93 -0.39 0.05 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 33 H 0.41 4.67 6.29 -40.82 -0.26 4.41 16 34 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.07 1.61 6.45 -51.93 -0.33 1.28 16 37 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 41 H 0.09 2.01 7.30 -51.93 -0.38 1.63 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -31.84 347.42 -5.94 -37.77 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.88 Total: 4.37 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 0.09 Total: -4.19 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.45 Total: -35.09 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.60 Total: -25.04 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.23 Total: 16.94 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.84 -5.94 -37.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174750029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.061 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds