Wall clock time and date at job start Tue Mar 31 2020 06:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47060 * 2 1 4 4 C 1.52998 * 109.47139 * 353.61767 * 3 2 1 5 5 C 1.53003 * 109.46953 * 233.62150 * 3 2 1 6 6 N 1.46503 * 109.47629 * 113.62207 * 3 2 1 7 7 C 1.46491 * 120.00006 * 194.37376 * 6 3 2 8 8 C 1.50700 * 109.47083 * 265.67224 * 7 6 3 9 9 H 1.07991 * 120.00094 * 5.01202 * 8 7 6 10 10 C 1.37887 * 120.00003 * 185.01402 * 8 7 6 11 11 N 1.31504 * 120.00071 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99797 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47205 * 90.00047 * 12 10 8 14 14 H 1.48497 * 109.46836 * 210.00092 * 12 10 8 15 15 H 1.48502 * 109.47086 * 329.99744 * 12 10 8 16 16 C 1.34772 * 119.99303 * 14.37331 * 6 3 2 17 17 O 1.21742 * 119.99456 * 226.37322 * 16 6 3 18 18 C 1.46377 * 120.00456 * 46.38129 * 16 6 3 19 19 C 1.33974 * 119.22812 * 342.18681 * 18 16 6 20 20 O 1.35008 * 121.68429 * 180.39446 * 19 18 16 21 21 C 1.43250 * 116.76500 * 342.79538 * 20 19 18 22 22 C 1.53556 * 108.08617 * 45.48972 * 21 20 19 23 23 O 1.36215 * 119.23152 * 161.92412 * 18 16 6 24 24 H 1.09001 * 109.47449 * 185.44224 * 1 2 3 25 25 H 1.09002 * 109.47407 * 305.44914 * 1 2 3 26 26 H 1.09005 * 109.47405 * 65.44699 * 1 2 3 27 27 H 1.08999 * 109.47829 * 239.99301 * 2 1 3 28 28 H 1.08998 * 109.46977 * 119.99496 * 2 1 3 29 29 H 1.09000 * 109.47214 * 184.83074 * 4 3 2 30 30 H 1.08996 * 109.47471 * 304.83732 * 4 3 2 31 31 H 1.09003 * 109.47344 * 64.83422 * 4 3 2 32 32 H 1.08992 * 109.47312 * 312.29171 * 5 3 2 33 33 H 1.09008 * 109.46844 * 72.28839 * 5 3 2 34 34 H 1.09002 * 109.47308 * 192.28610 * 5 3 2 35 35 H 1.09003 * 109.47420 * 25.67126 * 7 6 3 36 36 H 1.09001 * 109.47400 * 145.67295 * 7 6 3 37 37 H 0.97001 * 120.00297 * 179.97438 * 11 10 8 38 38 H 1.07994 * 119.15982 * 0.37135 * 19 18 16 39 39 H 1.08995 * 109.73917 * 165.13622 * 21 20 19 40 40 H 1.09002 * 109.73663 * 285.84487 * 21 20 19 41 41 H 1.09005 * 109.75312 * 61.47010 * 22 21 20 42 42 H 1.08999 * 109.75330 * 182.21726 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 0.8584 2.4012 -0.1603 5 6 3.0166 1.6381 -1.1614 6 7 2.7245 1.7186 1.2655 7 6 3.0262 3.0999 1.6489 8 6 4.4264 3.4476 1.2138 9 1 5.0019 2.7427 0.6323 10 6 4.9729 4.6658 1.5582 11 7 6.1950 4.9691 1.1789 12 14 3.9777 5.8848 2.5647 13 1 4.2201 5.6476 4.0104 14 1 4.3887 7.2681 2.2143 15 1 2.5331 5.7079 2.2693 16 6 3.0768 0.7016 2.0767 17 8 2.8443 0.7664 3.2700 18 6 3.7389 -0.4807 1.5232 19 6 3.6711 -0.7116 0.2053 20 8 4.2566 -1.7905 -0.3567 21 6 5.2538 -2.4622 0.4221 22 6 4.7139 -2.6245 1.8504 23 8 4.4143 -1.3174 2.3594 24 1 -0.3634 -1.0230 0.0975 25 1 -0.3634 0.5960 0.8372 26 1 -0.3634 0.4270 -0.9348 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5137 0.8900 29 1 1.2285 3.4228 -0.2465 30 1 0.2983 2.1406 -1.0584 31 1 0.2064 2.3231 0.7097 32 1 3.7371 0.8204 -1.1719 33 1 2.4653 1.6488 -2.1018 34 1 3.5429 2.5846 -1.0381 35 1 2.3180 3.7738 1.1668 36 1 2.9460 3.2023 2.7312 37 1 6.5793 5.8263 1.4208 38 1 3.1339 -0.0172 -0.4236 39 1 5.4580 -3.4427 -0.0079 40 1 6.1684 -1.8693 0.4395 41 1 3.8102 -3.2339 1.8356 42 1 5.4685 -3.0986 2.4779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187511901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:41 Heat of formation + Delta-G solvation = 4.994511 kcal Electronic energy + Delta-G solvation = -24814.456949 eV Core-core repulsion = 21379.287655 eV Total energy + Delta-G solvation = -3435.169293 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.66068 -39.56546 -37.55326 -36.36184 -33.80290 -32.17642 -32.06937 -29.85287 -29.39072 -27.69289 -26.90727 -25.04337 -23.60604 -22.57870 -21.04969 -20.10041 -18.11123 -17.90105 -17.29583 -16.89320 -16.14197 -15.70935 -15.32755 -14.83074 -14.70486 -14.45544 -14.09745 -13.97286 -13.91972 -13.45526 -12.95796 -12.53480 -12.49258 -12.18558 -11.90623 -11.79313 -11.71053 -11.49633 -11.27090 -11.05878 -10.86708 -10.67190 -10.58410 -10.45846 -10.38285 -10.16178 -9.87325 -9.48854 -9.24510 -8.60813 -7.73621 -7.49775 -6.11760 -4.10985 1.66809 3.11006 3.28720 3.34454 3.35470 3.38082 3.60527 4.08254 4.37944 4.43841 4.74046 4.88745 4.96195 4.97481 5.01700 5.18685 5.24995 5.36406 5.39099 5.42455 5.55676 5.61977 5.68357 5.80758 5.93704 6.00101 6.07986 6.12377 6.17351 6.26715 6.29099 6.52878 6.76182 6.84783 6.92435 7.00532 7.49727 7.56587 7.65141 8.22124 8.45019 8.69549 8.93313 9.49050 11.00823 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.007201 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.032601 B = 3887.470316 C = 4564.156645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.174 4.174 3 C 0.168 3.832 4 C -0.153 4.153 5 C -0.199 4.199 6 N -0.625 5.625 7 C 0.225 3.775 8 C -0.537 4.537 9 H 0.079 0.921 10 C 0.075 3.925 11 N -0.894 5.894 12 Si 0.872 3.128 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.264 1.264 16 C 0.611 3.389 17 O -0.509 6.509 18 C -0.092 4.092 19 C -0.060 4.060 20 O -0.304 6.304 21 C 0.008 3.992 22 C 0.019 3.981 23 O -0.290 6.290 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.039 0.961 36 H 0.031 0.969 37 H 0.265 0.735 38 H 0.257 0.743 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.955 -12.841 -6.181 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.211 4.211 3 C 0.082 3.918 4 C -0.210 4.210 5 C -0.256 4.256 6 N -0.362 5.362 7 C 0.105 3.895 8 C -0.575 4.575 9 H 0.097 0.903 10 C -0.128 4.128 11 N -0.532 5.532 12 Si 0.699 3.301 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.189 1.189 16 C 0.400 3.600 17 O -0.384 6.384 18 C -0.141 4.141 19 C -0.123 4.123 20 O -0.217 6.217 21 C -0.067 4.067 22 C -0.058 4.058 23 O -0.204 6.204 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.270 0.730 39 H 0.133 0.867 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.903 -12.697 -5.479 15.928 hybrid contribution 0.102 0.477 0.590 0.766 sum -7.801 -12.220 -4.889 15.300 Atomic orbital electron populations 1.22028 0.95247 1.01390 1.02322 1.23373 0.97400 0.96313 1.04026 1.20373 0.92358 0.94100 0.84923 1.22280 0.96873 0.99999 1.01885 1.22974 0.99890 1.05880 0.96891 1.47407 1.61864 1.06924 1.19970 1.19655 0.96885 0.76671 0.96264 1.21489 0.98029 1.02637 1.35384 0.90285 1.24851 0.94707 0.97897 0.95367 1.69888 1.14273 1.23024 1.46042 0.86902 0.81074 0.80743 0.81365 1.19954 1.21073 1.18898 1.16806 0.76573 0.81035 0.85562 1.90719 1.51086 1.79218 1.17403 1.21174 1.06181 0.97200 0.89539 1.26941 0.98406 0.91905 0.94999 1.86136 1.51774 1.40526 1.43231 1.23669 0.91313 0.99196 0.92571 1.23575 1.01746 0.84549 0.95898 1.86460 1.71635 1.22846 1.39436 0.93092 0.91970 0.92124 0.89434 0.89272 0.91220 0.91368 0.91780 0.90761 0.91875 0.88109 0.94368 0.95098 0.92537 0.72954 0.86728 0.90236 0.91043 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.69 37.15 0.32 -1.44 16 2 C -0.17 -2.43 3.81 -26.73 -0.10 -2.53 16 3 C 0.17 2.72 0.77 -131.82 -0.10 2.62 16 4 C -0.15 -2.17 6.69 37.16 0.25 -1.92 16 5 C -0.20 -3.12 8.21 37.16 0.31 -2.81 16 6 N -0.62 -13.16 2.29 -161.81 -0.37 -13.53 16 7 C 0.22 5.41 4.09 -5.20 -0.02 5.39 16 8 C -0.54 -14.80 8.65 -34.44 -0.30 -15.09 16 9 H 0.08 2.36 7.73 -52.49 -0.41 1.95 16 10 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 11 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 12 Si 0.87 21.29 27.37 -169.99 -4.65 16.64 16 13 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.26 -6.07 6.69 56.52 0.38 -5.70 16 16 C 0.61 13.89 5.67 -12.99 -0.07 13.82 16 17 O -0.51 -13.20 17.20 -8.84 -0.15 -13.35 16 18 C -0.09 -1.83 5.62 -37.81 -0.21 -2.04 16 19 C -0.06 -1.00 6.27 29.23 0.18 -0.82 16 20 O -0.30 -4.49 10.47 -30.85 -0.32 -4.82 16 21 C 0.01 0.10 7.29 37.45 0.27 0.37 16 22 C 0.02 0.24 7.32 37.45 0.27 0.52 16 23 O -0.29 -5.61 10.34 -45.22 -0.47 -6.08 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 26 H 0.06 0.59 6.72 -51.93 -0.35 0.24 16 27 H 0.09 1.07 6.10 -51.93 -0.32 0.75 16 28 H 0.09 1.46 3.72 -51.93 -0.19 1.26 16 29 H 0.07 1.07 6.64 -51.93 -0.34 0.73 16 30 H 0.07 0.75 6.63 -51.93 -0.34 0.41 16 31 H 0.06 0.91 6.67 -51.93 -0.35 0.57 16 32 H 0.07 1.17 4.97 -51.93 -0.26 0.92 16 33 H 0.06 0.77 8.09 -51.92 -0.42 0.35 16 34 H 0.10 1.91 6.39 -51.93 -0.33 1.58 16 35 H 0.04 0.86 5.28 -51.93 -0.27 0.59 16 36 H 0.03 0.81 6.79 -51.93 -0.35 0.45 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.26 3.97 0.36 -85.95 -0.03 3.94 16 39 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 312.76 15.07 4.71 4.71 Total: -1.00 -34.00 312.76 -5.36 -39.36 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.58 Total: 5.09 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 0.70 Total: -1.93 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.40 Total: -39.62 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.94 Total: -24.25 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.65 Total: 16.64 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.00 -5.36 -39.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187511901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.354 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds