Wall clock time and date at job start Tue Mar 31 2020 06:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.50699 * 109.46866 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00041 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00037 * 180.02562 * 4 3 2 7 7 C 1.47422 * 125.64636 * 0.02562 * 6 4 3 8 8 C 1.54907 * 104.82923 * 155.83939 * 7 6 4 9 9 C 1.55151 * 101.58388 * 37.01140 * 8 7 6 10 10 C 1.47026 * 125.64829 * 179.71645 * 6 4 3 11 11 H 1.08993 * 109.87935 * 300.51245 * 10 6 4 12 12 C 1.50707 * 109.88074 * 61.67637 * 10 6 4 13 13 O 1.20821 * 119.99810 * 0.02562 * 12 10 6 14 14 O 1.34224 * 119.99581 * 179.97438 * 12 10 6 15 15 C 1.45200 * 116.99890 * 180.02562 * 14 12 10 16 16 C 1.52996 * 109.47516 * 180.02562 * 15 14 12 17 17 C 1.50693 * 109.47396 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00432 * 359.97438 * 17 16 15 19 19 C 1.37883 * 120.00092 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99968 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00169 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47250 * 89.99786 * 21 19 17 23 23 H 1.48493 * 109.47029 * 209.99977 * 21 19 17 24 24 H 1.48501 * 109.46779 * 330.00001 * 21 19 17 25 25 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 26 26 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 28 28 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 29 29 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 30 30 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 31 31 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 32 32 H 1.08999 * 110.36404 * 274.67559 * 7 6 4 33 33 H 1.08993 * 110.36812 * 36.99819 * 7 6 4 34 34 H 1.09009 * 111.00085 * 155.08461 * 8 7 6 35 35 H 1.08998 * 111.00418 * 278.89093 * 8 7 6 36 36 H 1.08993 * 110.72399 * 82.86023 * 9 8 7 37 37 H 1.09010 * 110.71785 * 206.13515 * 9 8 7 38 38 H 1.09003 * 109.47127 * 300.00266 * 15 14 12 39 39 H 1.08995 * 109.47442 * 59.99670 * 15 14 12 40 40 H 1.09003 * 109.47082 * 300.00224 * 16 15 14 41 41 H 1.09000 * 109.47500 * 59.99577 * 16 15 14 42 42 H 0.96997 * 119.99699 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4427 0.0006 5 8 4.1533 0.3924 0.0015 6 7 4.2207 2.6099 0.0013 7 6 3.6128 3.9529 0.0019 8 6 4.6939 4.8772 0.6154 9 6 5.9946 4.2660 0.0307 10 6 5.6838 2.7547 0.0078 11 1 6.0997 2.2752 0.8939 12 6 6.2659 2.1333 -1.2357 13 8 5.5381 1.6190 -2.0515 14 8 7.5928 2.1521 -1.4372 15 6 8.0830 1.5354 -2.6569 16 6 9.6075 1.6530 -2.7108 17 6 10.1164 1.0125 -3.9764 18 1 9.4219 0.5657 -4.6725 19 6 11.4685 0.9967 -4.2457 20 7 12.3142 1.5412 -3.3983 21 14 12.0993 0.2033 -5.8148 22 1 12.1478 1.2182 -6.8978 23 1 13.4623 -0.3381 -5.5824 24 1 11.1890 -0.9009 -6.2116 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 -0.8900 31 1 1.6764 1.9564 0.8900 32 1 3.3805 4.2646 -1.0164 33 1 2.7129 3.9617 0.6168 34 1 4.5622 5.9069 0.2826 35 1 4.6879 4.8168 1.7037 36 1 6.1783 4.6410 -0.9761 37 1 6.8443 4.4728 0.6815 38 1 7.7994 0.4830 -2.6714 39 1 7.6486 2.0405 -3.5195 40 1 9.8915 2.7053 -2.6962 41 1 10.0417 1.1476 -1.8482 42 1 13.2654 1.5304 -3.5879 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194948947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:44 Heat of formation + Delta-G solvation = -140.247328 kcal Electronic energy + Delta-G solvation = -22520.174877 eV Core-core repulsion = 19078.707425 eV Total energy + Delta-G solvation = -3441.467452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.79311 -39.24878 -37.56455 -35.89782 -34.52218 -33.32662 -31.97286 -30.61456 -29.71498 -27.96785 -25.23598 -24.16863 -22.35808 -21.94032 -20.99687 -20.47824 -19.04494 -17.73918 -17.27738 -16.51451 -15.96919 -15.91378 -15.83492 -15.48201 -14.66319 -14.41629 -14.13774 -13.80534 -13.49627 -13.32142 -13.06285 -12.84368 -12.53665 -12.32815 -12.12581 -11.93966 -11.82784 -11.63876 -11.31112 -11.23536 -11.11760 -11.00144 -10.92167 -10.70666 -10.65338 -10.14504 -9.86709 -9.62252 -9.58911 -9.28638 -8.82680 -8.42196 -6.08464 -4.12457 2.45888 2.64241 2.74892 3.29962 3.33295 3.36817 3.43191 4.15162 4.21023 4.41256 4.56152 4.63785 4.69430 4.80959 4.95514 5.03750 5.11249 5.25450 5.26711 5.28082 5.35784 5.39342 5.46937 5.51905 5.56064 5.66576 5.81432 5.87241 5.96351 6.02085 6.13137 6.15971 6.18225 6.68162 7.05623 7.33863 7.58989 7.65483 7.89471 8.11065 8.24295 8.34024 8.93020 9.51712 11.03133 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022709 B = 0.003364 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.717743 B = 8322.637708 C = 9261.722381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.131 4.131 4 C 0.532 3.468 5 O -0.522 6.522 6 N -0.610 5.610 7 C 0.099 3.901 8 C -0.132 4.132 9 C -0.118 4.118 10 C 0.145 3.855 11 H 0.111 0.889 12 C 0.446 3.554 13 O -0.501 6.501 14 O -0.357 6.357 15 C 0.077 3.923 16 C 0.026 3.974 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.272 1.272 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.823 7.823 11.154 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.171 4.171 4 C 0.322 3.678 5 O -0.396 6.396 6 N -0.346 5.346 7 C -0.024 4.024 8 C -0.170 4.170 9 C -0.156 4.156 10 C 0.039 3.961 11 H 0.129 0.871 12 C 0.287 3.713 13 O -0.388 6.388 14 O -0.273 6.273 15 C 0.004 3.996 16 C -0.011 4.011 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.540 7.006 10.897 25.136 hybrid contribution 0.454 -0.443 -1.079 1.252 sum -21.086 6.563 9.818 24.168 Atomic orbital electron populations 1.21781 0.95459 1.01971 1.01638 1.21307 0.95186 0.94657 1.03822 1.21669 0.91069 1.00255 1.04075 1.20453 0.90095 0.81971 0.75322 1.90745 1.70274 1.30442 1.48151 1.48381 1.05006 1.06495 1.74736 1.22391 0.96954 0.81625 1.01424 1.22827 0.93697 0.99308 1.01172 1.22611 0.99018 0.90319 1.03699 1.21086 0.81886 0.97808 0.95305 0.87099 1.23678 0.82129 0.77532 0.87993 1.90621 1.61242 1.41417 1.45564 1.86495 1.22571 1.72537 1.45655 1.23615 0.98463 0.96195 0.81291 1.19157 0.85310 0.98610 0.98051 1.20992 0.92319 1.37957 1.05110 0.92303 1.24982 0.96741 0.95339 0.97089 1.69976 1.02726 1.44359 1.35862 0.86470 0.78192 0.79625 0.83032 1.20490 1.21027 1.19705 0.92679 0.92378 0.92789 0.90995 0.91225 0.88928 0.89105 0.91010 0.89962 0.89134 0.89979 0.89628 0.88169 0.92417 0.92537 0.95381 0.95342 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.73 16 2 C -0.11 -1.13 5.22 -26.73 -0.14 -1.26 16 3 C -0.13 -1.24 4.71 -27.88 -0.13 -1.37 16 4 C 0.53 7.58 7.02 -10.99 -0.08 7.51 16 5 O -0.52 -9.96 15.26 -8.43 -0.13 -10.09 16 6 N -0.61 -7.59 2.84 -164.33 -0.47 -8.06 16 7 C 0.10 0.76 6.69 -2.53 -0.02 0.74 16 8 C -0.13 -0.84 7.08 -24.59 -0.17 -1.01 16 9 C -0.12 -1.15 6.44 -24.91 -0.16 -1.31 16 10 C 0.14 2.00 3.38 -68.11 -0.23 1.77 16 11 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 12 C 0.45 8.58 6.76 36.01 0.24 8.82 16 13 O -0.50 -11.12 14.81 -23.94 -0.35 -11.47 16 14 O -0.36 -7.56 10.19 -39.24 -0.40 -7.96 16 15 C 0.08 1.83 5.40 37.16 0.20 2.03 16 16 C 0.03 0.70 5.35 -27.89 -0.15 0.55 16 17 C -0.53 -15.22 9.11 -34.44 -0.31 -15.53 16 18 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 21 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 29 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.60 7.85 -51.93 -0.41 0.20 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.41 7.47 -51.93 -0.39 0.02 16 34 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.92 7.85 -51.93 -0.41 0.51 16 37 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 38 H 0.06 1.40 8.13 -51.93 -0.42 0.98 16 39 H 0.06 1.32 8.13 -51.93 -0.42 0.89 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 351.03 15.07 5.29 5.29 Total: -1.00 -36.09 351.03 -8.10 -44.19 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -7.08 Total: -4.51 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.68 Total: 1.85 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.27 Total: -34.12 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.88 Total: -29.52 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.09 -8.10 -44.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194948947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.059 kcal (2) G-P(sol) polarization free energy of solvation -36.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds