Wall clock time and date at job start Tue Mar 31 2020 06:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47428 * 2 1 4 4 C 1.50698 * 109.47102 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99745 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99753 * 179.97438 * 4 3 2 7 7 C 1.47425 * 125.65138 * 0.02907 * 6 4 3 8 8 C 1.54908 * 104.92961 * 204.15299 * 7 6 4 9 9 C 1.55154 * 101.58289 * 322.93718 * 8 7 6 10 10 C 1.47290 * 125.79121 * 180.02562 * 6 4 3 11 11 H 1.09004 * 109.85762 * 59.50172 * 10 6 4 12 12 C 1.50694 * 109.87498 * 298.36072 * 10 6 4 13 13 O 1.20826 * 120.00148 * 0.69774 * 12 10 6 14 14 O 1.34228 * 120.00414 * 180.70128 * 12 10 6 15 15 C 1.45194 * 117.00350 * 180.02562 * 14 12 10 16 16 C 1.53006 * 109.47164 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.47027 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00131 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00024 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99878 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00303 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47058 * 59.99736 * 21 19 17 23 23 H 1.48501 * 109.47203 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46644 * 300.00427 * 21 19 17 25 25 H 1.08998 * 109.47509 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47320 * 300.00081 * 1 2 3 27 27 H 1.09006 * 109.46897 * 59.99466 * 1 2 3 28 28 H 1.08999 * 109.46815 * 240.00038 * 2 1 3 29 29 H 1.09000 * 109.46465 * 120.00548 * 2 1 3 30 30 H 1.09001 * 109.46936 * 59.99684 * 3 2 1 31 31 H 1.09000 * 109.47095 * 300.00146 * 3 2 1 32 32 H 1.09002 * 110.36696 * 85.25946 * 7 6 4 33 33 H 1.08995 * 110.36608 * 323.04783 * 7 6 4 34 34 H 1.09008 * 111.00494 * 81.01141 * 8 7 6 35 35 H 1.09000 * 111.00857 * 204.82205 * 8 7 6 36 36 H 1.09002 * 110.72290 * 153.86663 * 9 8 7 37 37 H 1.08994 * 110.71922 * 276.96131 * 9 8 7 38 38 H 1.09001 * 109.47045 * 299.99158 * 15 14 12 39 39 H 1.08997 * 109.47710 * 60.00093 * 15 14 12 40 40 H 1.09001 * 109.47038 * 299.99849 * 16 15 14 41 41 H 1.08998 * 109.47311 * 59.99558 * 16 15 14 42 42 H 0.97006 * 120.00037 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2210 2.6095 0.0002 7 6 3.6132 3.9527 -0.0002 8 6 4.6929 4.8791 -0.6130 9 6 5.9945 4.2701 -0.0280 10 6 5.6863 2.7581 0.0002 11 1 6.1072 2.2775 -0.8830 12 6 6.2639 2.1405 1.2476 13 8 5.5347 1.6145 2.0547 14 8 7.5885 2.1748 1.4621 15 6 8.0745 1.5598 2.6843 16 6 9.5968 1.6970 2.7539 17 6 10.1011 1.0593 4.0227 18 1 9.4055 0.6014 4.7105 19 6 11.4507 1.0593 4.3051 20 7 12.2977 1.6163 3.4674 21 14 12.0760 0.2682 5.8776 22 1 11.7072 -1.1702 5.8885 23 1 13.5535 0.4015 5.9452 24 1 11.4642 0.9449 7.0493 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.3798 4.2638 1.0180 33 1 2.7128 3.9614 -0.6145 34 1 4.6879 4.8184 -1.7014 35 1 4.5588 5.9085 -0.2807 36 1 6.8441 4.4785 -0.6783 37 1 6.1787 4.6476 0.9777 38 1 7.6257 2.0567 3.5444 39 1 7.8038 0.5040 2.6924 40 1 10.0461 1.2005 1.8938 41 1 9.8672 2.7529 2.7460 42 1 13.2473 1.6160 3.6659 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194948962.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:47 Heat of formation + Delta-G solvation = -140.203264 kcal Electronic energy + Delta-G solvation = -22516.491971 eV Core-core repulsion = 19075.026429 eV Total energy + Delta-G solvation = -3441.465541 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.77659 -39.24866 -37.55570 -35.89951 -34.52103 -33.32652 -31.97189 -30.61047 -29.70904 -27.96724 -25.23599 -24.17360 -22.35599 -21.93553 -20.99700 -20.47489 -19.04543 -17.73115 -17.27439 -16.51420 -15.96576 -15.91186 -15.83693 -15.48131 -14.66445 -14.41935 -14.13626 -13.80807 -13.49250 -13.31912 -13.06101 -12.84468 -12.53388 -12.32131 -12.12560 -11.93727 -11.82877 -11.63710 -11.31064 -11.23010 -11.11031 -11.01264 -10.92097 -10.69106 -10.66547 -10.14950 -9.86581 -9.62102 -9.58907 -9.29949 -8.82766 -8.41870 -6.08267 -4.12421 2.45529 2.63806 2.75060 3.31850 3.32971 3.35734 3.42226 4.15450 4.20949 4.41245 4.56268 4.63776 4.69429 4.80956 4.95731 5.03606 5.11356 5.25485 5.26751 5.28157 5.35899 5.39446 5.47074 5.51943 5.56009 5.66852 5.81390 5.87252 5.96339 6.01614 6.13036 6.15885 6.18052 6.68023 7.05451 7.34250 7.58740 7.65466 7.89415 8.11207 8.24265 8.33831 8.92793 9.51706 11.03261 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.003360 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.705616 B = 8330.675398 C = 9269.139454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.131 4.131 4 C 0.533 3.467 5 O -0.522 6.522 6 N -0.610 5.610 7 C 0.098 3.902 8 C -0.132 4.132 9 C -0.118 4.118 10 C 0.145 3.855 11 H 0.112 0.888 12 C 0.446 3.554 13 O -0.501 6.501 14 O -0.357 6.357 15 C 0.077 3.923 16 C 0.026 3.974 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.752 7.666 -11.298 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.171 4.171 4 C 0.322 3.678 5 O -0.396 6.396 6 N -0.346 5.346 7 C -0.024 4.024 8 C -0.170 4.170 9 C -0.157 4.157 10 C 0.039 3.961 11 H 0.129 0.871 12 C 0.287 3.713 13 O -0.388 6.388 14 O -0.273 6.273 15 C 0.004 3.996 16 C -0.011 4.011 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.465 6.852 -11.042 25.093 hybrid contribution 0.439 -0.454 1.085 1.256 sum -21.026 6.398 -9.957 24.128 Atomic orbital electron populations 1.21783 0.95459 1.01969 1.01639 1.21306 0.95185 0.94658 1.03820 1.21668 0.91068 1.00253 1.04075 1.20445 0.90078 0.81961 0.75324 1.90743 1.70277 1.30428 1.48156 1.48442 1.05004 1.06473 1.74730 1.22385 0.96954 0.81664 1.01422 1.22824 0.93694 0.99289 1.01169 1.22605 0.99007 0.90322 1.03720 1.21128 0.81881 0.97828 0.95234 0.87079 1.23670 0.82105 0.77604 0.87960 1.90624 1.61033 1.40989 1.46169 1.86495 1.22802 1.72429 1.45531 1.23617 0.98530 0.96245 0.81177 1.19154 0.85349 0.98598 0.97984 1.20956 0.92502 1.37805 1.05211 0.92355 1.24976 0.96713 0.95297 0.97128 1.69966 1.02829 1.43958 1.36174 0.86529 0.77603 0.79946 0.83211 1.20043 1.21101 1.20083 0.92376 0.92680 0.92791 0.91227 0.90994 0.88937 0.89102 0.91040 0.89977 0.89988 0.89127 0.88170 0.89641 0.92539 0.92412 0.95350 0.95382 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.11 -1.12 5.22 -26.73 -0.14 -1.26 16 3 C -0.13 -1.24 4.71 -27.89 -0.13 -1.37 16 4 C 0.53 7.59 7.02 -10.99 -0.08 7.51 16 5 O -0.52 -9.96 15.27 -8.59 -0.13 -10.09 16 6 N -0.61 -7.60 2.85 -164.12 -0.47 -8.07 16 7 C 0.10 0.76 6.68 -2.53 -0.02 0.74 16 8 C -0.13 -0.84 7.08 -24.58 -0.17 -1.01 16 9 C -0.12 -1.15 6.43 -24.90 -0.16 -1.31 16 10 C 0.14 2.00 3.38 -67.96 -0.23 1.77 16 11 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 12 C 0.45 8.57 6.79 36.00 0.24 8.82 16 13 O -0.50 -11.11 14.79 -23.98 -0.35 -11.46 16 14 O -0.36 -7.55 10.18 -39.25 -0.40 -7.95 16 15 C 0.08 1.82 5.40 37.16 0.20 2.02 16 16 C 0.03 0.71 5.35 -27.88 -0.15 0.56 16 17 C -0.53 -15.25 9.11 -34.44 -0.31 -15.56 16 18 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 21 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 29 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.61 7.85 -51.93 -0.41 0.20 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.41 7.47 -51.93 -0.39 0.03 16 34 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.91 7.85 -51.93 -0.41 0.51 16 38 H 0.06 1.32 8.13 -51.93 -0.42 0.89 16 39 H 0.06 1.40 8.13 -51.93 -0.42 0.98 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 351.06 15.07 5.29 5.29 Total: -1.00 -36.04 351.06 -8.10 -44.14 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -7.08 Total: -4.47 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -0.68 Total: 1.84 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.27 Total: -34.12 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.89 Total: -29.50 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.04 -8.10 -44.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194948962.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.060 kcal (2) G-P(sol) polarization free energy of solvation -36.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds