Wall clock time and date at job start Tue Mar 31 2020 06:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47428 * 2 1 4 4 C 1.50698 * 109.47102 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99745 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99753 * 179.97438 * 4 3 2 7 7 C 1.47425 * 125.65138 * 0.02907 * 6 4 3 8 8 C 1.54908 * 104.92961 * 204.15299 * 7 6 4 9 9 C 1.55154 * 101.58289 * 322.93718 * 8 7 6 10 10 C 1.47290 * 125.79121 * 180.02562 * 6 4 3 11 11 H 1.09004 * 109.85762 * 59.50172 * 10 6 4 12 12 C 1.50694 * 109.87498 * 298.36072 * 10 6 4 13 13 O 1.20826 * 120.00148 * 0.69774 * 12 10 6 14 14 O 1.34228 * 120.00414 * 180.70128 * 12 10 6 15 15 C 1.45194 * 117.00350 * 180.02562 * 14 12 10 16 16 C 1.53006 * 109.47164 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.47027 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00131 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00024 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99878 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00303 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47058 * 59.99736 * 21 19 17 23 23 H 1.48501 * 109.47203 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46644 * 300.00427 * 21 19 17 25 25 H 1.08998 * 109.47509 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47320 * 300.00081 * 1 2 3 27 27 H 1.09006 * 109.46897 * 59.99466 * 1 2 3 28 28 H 1.08999 * 109.46815 * 240.00038 * 2 1 3 29 29 H 1.09000 * 109.46465 * 120.00548 * 2 1 3 30 30 H 1.09001 * 109.46936 * 59.99684 * 3 2 1 31 31 H 1.09000 * 109.47095 * 300.00146 * 3 2 1 32 32 H 1.09002 * 110.36696 * 85.25946 * 7 6 4 33 33 H 1.08995 * 110.36608 * 323.04783 * 7 6 4 34 34 H 1.09008 * 111.00494 * 81.01141 * 8 7 6 35 35 H 1.09000 * 111.00857 * 204.82205 * 8 7 6 36 36 H 1.09002 * 110.72290 * 153.86663 * 9 8 7 37 37 H 1.08994 * 110.71922 * 276.96131 * 9 8 7 38 38 H 1.09001 * 109.47045 * 299.99158 * 15 14 12 39 39 H 1.08997 * 109.47710 * 60.00093 * 15 14 12 40 40 H 1.09001 * 109.47038 * 299.99849 * 16 15 14 41 41 H 1.08998 * 109.47311 * 59.99558 * 16 15 14 42 42 H 0.97006 * 120.00037 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2210 2.6095 0.0002 7 6 3.6132 3.9527 -0.0002 8 6 4.6929 4.8791 -0.6130 9 6 5.9945 4.2701 -0.0280 10 6 5.6863 2.7581 0.0002 11 1 6.1072 2.2775 -0.8830 12 6 6.2639 2.1405 1.2476 13 8 5.5347 1.6145 2.0547 14 8 7.5885 2.1748 1.4621 15 6 8.0745 1.5598 2.6843 16 6 9.5968 1.6970 2.7539 17 6 10.1011 1.0593 4.0227 18 1 9.4055 0.6014 4.7105 19 6 11.4507 1.0593 4.3051 20 7 12.2977 1.6163 3.4674 21 14 12.0760 0.2682 5.8776 22 1 11.7072 -1.1702 5.8885 23 1 13.5535 0.4015 5.9452 24 1 11.4642 0.9449 7.0493 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.3798 4.2638 1.0180 33 1 2.7128 3.9614 -0.6145 34 1 4.6879 4.8184 -1.7014 35 1 4.5588 5.9085 -0.2807 36 1 6.8441 4.4785 -0.6783 37 1 6.1787 4.6476 0.9777 38 1 7.6257 2.0567 3.5444 39 1 7.8038 0.5040 2.6924 40 1 10.0461 1.2005 1.8938 41 1 9.8672 2.7529 2.7460 42 1 13.2473 1.6160 3.6659 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194948962.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:47 Heat of formation + Delta-G solvation = -162.542531 kcal Electronic energy + Delta-G solvation = -22517.460674 eV Core-core repulsion = 19075.026429 eV Total energy + Delta-G solvation = -3442.434245 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.04582 -40.62999 -38.58660 -37.60196 -35.50358 -35.34313 -32.94276 -32.40756 -30.89089 -28.71532 -27.18671 -25.25786 -23.65014 -22.78030 -22.62807 -21.69391 -20.14678 -19.19470 -18.39809 -18.30738 -17.65613 -17.32339 -16.98958 -16.62329 -16.46582 -15.53749 -15.24864 -15.01740 -14.52073 -14.40221 -14.38291 -14.17321 -13.83969 -13.41104 -13.26755 -13.10837 -12.92213 -12.81790 -12.69053 -12.60547 -12.58166 -12.24688 -11.97626 -11.93753 -11.79292 -11.66146 -11.57116 -11.55974 -11.33826 -10.96925 -10.65013 -9.88459 -8.30828 -6.44761 1.09274 1.27279 1.38690 1.41826 1.50351 1.76090 2.02680 2.37498 3.03012 3.33656 3.43695 3.71649 3.74579 3.94983 4.00004 4.06931 4.11671 4.16959 4.18894 4.47572 4.50994 4.60363 4.63743 4.67936 4.74961 4.79869 4.83389 4.91131 5.06820 5.14825 5.20745 5.22286 5.24506 5.30252 5.40153 5.43834 5.47527 5.68665 6.01820 6.39076 6.64475 6.68908 7.10826 7.24888 8.81662 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.003360 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.705616 B = 8330.675398 C = 9269.139454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.121 4.121 4 C 0.518 3.482 5 O -0.586 6.586 6 N -0.610 5.610 7 C 0.089 3.911 8 C -0.115 4.115 9 C -0.117 4.117 10 C 0.143 3.857 11 H 0.114 0.886 12 C 0.439 3.561 13 O -0.535 6.535 14 O -0.361 6.361 15 C 0.093 3.907 16 C 0.036 3.964 17 C -0.556 4.556 18 H 0.061 0.939 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.974 3.026 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.264 1.264 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.037 0.963 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.004 0.996 41 H 0.013 0.987 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.616 9.483 -11.717 28.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.160 4.160 4 C 0.310 3.690 5 O -0.465 6.465 6 N -0.345 5.345 7 C -0.032 4.032 8 C -0.153 4.153 9 C -0.155 4.155 10 C 0.037 3.963 11 H 0.131 0.869 12 C 0.282 3.718 13 O -0.424 6.424 14 O -0.277 6.277 15 C 0.020 3.980 16 C -0.002 4.002 17 C -0.594 4.594 18 H 0.079 0.921 19 C -0.191 4.191 20 N -0.563 5.563 21 Si 0.797 3.203 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.189 1.189 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.128 0.872 31 H 0.149 0.851 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.023 0.977 41 H 0.031 0.969 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.364 8.727 -11.479 27.456 hybrid contribution 1.002 -0.998 1.162 1.830 sum -22.362 7.729 -10.318 25.812 Atomic orbital electron populations 1.21731 0.92804 1.02472 1.03049 1.21289 0.97364 0.94928 1.01539 1.21738 0.87337 1.00217 1.06682 1.21454 0.92048 0.81515 0.74003 1.90710 1.71814 1.32843 1.51129 1.48713 1.04424 1.08081 1.73315 1.22796 0.98609 0.79126 1.02632 1.22873 0.90349 0.99976 1.02086 1.22693 1.01789 0.87164 1.03842 1.21417 0.82988 1.00166 0.91765 0.86874 1.24983 0.80801 0.76704 0.89327 1.90598 1.61340 1.42543 1.47894 1.86497 1.24696 1.72327 1.44213 1.23118 0.96601 0.95753 0.82574 1.18949 0.87398 0.97069 0.96748 1.21327 0.93354 1.38643 1.06030 0.92097 1.25961 0.96719 0.95516 1.00889 1.70080 1.03386 1.44714 1.38166 0.85367 0.77318 0.79001 0.78574 1.19334 1.20020 1.18903 0.92464 0.91803 0.90714 0.92659 0.94365 0.87194 0.85070 0.90918 0.86177 0.88051 0.86390 0.86749 0.90867 0.92321 0.93622 0.97713 0.96896 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.11 -2.25 5.22 30.59 0.16 -2.09 16 3 C -0.12 -2.05 4.71 29.85 0.14 -1.90 16 4 C 0.52 14.65 7.02 87.66 0.62 15.27 16 5 O -0.59 -23.51 15.27 10.50 0.16 -23.35 16 6 N -0.61 -14.41 2.85 -791.55 -2.26 -16.67 16 7 C 0.09 1.04 6.68 86.85 0.58 1.63 16 8 C -0.12 -0.99 7.08 31.98 0.23 -0.76 16 9 C -0.12 -2.06 6.43 31.78 0.20 -1.86 16 10 C 0.14 3.90 3.38 44.54 0.15 4.05 16 11 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 12 C 0.44 17.47 6.79 71.23 0.48 17.95 16 13 O -0.53 -24.71 14.79 26.97 0.40 -24.31 16 14 O -0.36 -15.95 10.18 -51.40 -0.52 -16.48 16 15 C 0.09 4.61 5.40 71.98 0.39 5.00 16 16 C 0.04 2.01 5.35 29.85 0.16 2.17 16 17 C -0.56 -32.95 9.11 25.60 0.23 -32.72 16 18 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 19 C 0.01 0.49 5.46 84.65 0.46 0.96 16 20 N -0.92 -56.38 13.29 21.45 0.28 -56.10 16 21 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 24 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 29 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 30 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.13 1.18 7.85 -2.39 -0.02 1.16 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.12 0.55 7.47 -2.39 -0.02 0.53 16 34 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.12 0.47 8.14 -2.39 -0.02 0.46 16 36 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.49 7.85 -2.39 -0.02 1.47 16 38 H 0.06 2.85 8.13 -2.39 -0.02 2.83 16 39 H 0.05 2.34 8.13 -2.39 -0.02 2.32 16 40 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -83.19 351.06 5.59 -77.60 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 0.98 Total: 5.87 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 4.52 Total: 6.61 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -1.97 Total: -72.76 kcal Atomic # 8 Polarization: -64.17 SS G_CDS: 0.04 Total: -64.14 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -83.19 5.59 -77.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194948962.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.942 kcal (2) G-P(sol) polarization free energy of solvation -83.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds