Wall clock time and date at job start Tue Mar 31 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99969 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00011 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.53000 * 109.46927 * 240.00054 * 2 1 3 14 14 O 1.45198 * 109.47301 * 60.00199 * 13 2 1 15 15 C 1.34226 * 117.00235 * 179.97438 * 14 13 2 16 16 O 1.20827 * 119.99724 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00369 * 180.02562 * 15 14 13 18 18 H 1.09002 * 109.66807 * 300.49941 * 17 15 14 19 19 C 1.53341 * 109.67857 * 179.97438 * 17 15 14 20 20 C 1.52917 * 108.67722 * 172.73490 * 19 17 15 21 21 N 1.45756 * 110.48780 * 50.75040 * 20 19 17 22 22 C 1.33354 * 124.10639 * 340.95068 * 21 20 19 23 23 O 1.21275 * 118.24334 * 182.17669 * 22 21 20 24 24 C 1.50173 * 123.50956 * 2.17347 * 22 21 20 25 25 H 1.08998 * 109.46768 * 300.00007 * 1 2 3 26 26 H 1.08995 * 109.47095 * 59.99957 * 1 2 3 27 27 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47384 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47386 * 300.00499 * 3 2 1 30 30 H 1.09007 * 109.47390 * 60.00059 * 3 2 1 31 31 H 1.09007 * 109.46922 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.46836 * 60.00468 * 4 2 1 33 33 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46807 * 179.97438 * 13 2 1 35 35 H 1.08992 * 109.47112 * 299.99548 * 13 2 1 36 36 H 1.09006 * 109.60211 * 292.49365 * 19 17 15 37 37 H 1.09005 * 109.60515 * 52.81309 * 19 17 15 38 38 H 1.08999 * 109.30129 * 171.06764 * 20 19 17 39 39 H 1.09002 * 109.30147 * 290.44081 * 20 19 17 40 40 H 0.97002 * 117.94327 * 160.92473 * 21 20 19 41 41 H 1.09000 * 109.41286 * 222.31767 * 24 22 21 42 42 H 1.09002 * 109.38166 * 102.58005 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9164 0.8670 2.3807 7 6 1.8712 -0.4817 3.7320 8 7 2.6273 -1.5510 3.8526 9 14 1.2491 0.3994 5.2572 10 1 1.7440 -0.3008 6.4697 11 1 1.7441 1.7993 5.2567 12 1 -0.2359 0.3994 5.2577 13 6 2.0400 -0.7212 -1.2493 14 8 1.5560 -0.0368 -2.4348 15 6 1.9170 -0.5465 -3.6229 16 8 2.6148 -1.5318 -3.6706 17 6 1.4532 0.1107 -4.8972 18 1 0.3637 0.1198 -4.9297 19 6 1.9999 -0.6605 -6.1045 20 6 1.3719 -0.0886 -7.3761 21 7 1.5128 1.3619 -7.4069 22 6 1.7650 2.1115 -6.3332 23 8 1.8216 3.3148 -6.4739 24 6 1.9826 1.5456 -4.9594 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7490 1.2492 33 1 2.8622 -1.8819 4.7337 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2492 36 1 3.0833 -0.5490 -6.1496 37 1 1.7445 -1.7160 -6.0105 38 1 1.8676 -0.5173 -8.2471 39 1 0.3136 -0.3484 -7.4036 40 1 1.4174 1.8098 -8.2620 41 1 1.4558 2.1580 -4.2276 42 1 3.0486 1.5483 -4.7317 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195055982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:59 Heat of formation + Delta-G solvation = -151.781335 kcal Electronic energy + Delta-G solvation = -22697.482433 eV Core-core repulsion = 19255.514828 eV Total energy + Delta-G solvation = -3441.967604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.03347 -39.95038 -37.51139 -36.54186 -35.44914 -33.60568 -32.34250 -30.06474 -27.49128 -26.72136 -26.43260 -25.50982 -23.79844 -22.81324 -20.68393 -19.59644 -18.32828 -17.82186 -17.48055 -16.71460 -16.36638 -16.01314 -15.90438 -15.41709 -14.68593 -14.56326 -14.41564 -13.79088 -13.63718 -13.48471 -13.11254 -12.55358 -12.39861 -12.18878 -12.10423 -12.04484 -11.52473 -11.48089 -11.29048 -10.96903 -10.87645 -10.71698 -10.61808 -10.37969 -10.34268 -10.25061 -10.01256 -9.76797 -9.48378 -9.23341 -8.97757 -8.38057 -6.02548 -4.03814 2.18605 2.32836 2.72722 2.89796 3.32034 3.36964 3.38987 4.07586 4.21808 4.31477 4.34897 4.45034 4.77702 4.85301 4.90545 5.15315 5.28166 5.33013 5.41784 5.44855 5.47162 5.52903 5.69698 5.78147 6.00387 6.15780 6.34697 6.38189 6.48768 6.58771 6.68844 6.75957 6.92778 7.08717 7.09437 7.11457 7.58076 7.69780 7.82629 7.86024 7.95899 8.37577 9.00340 9.59427 11.09075 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.034774 B = 0.003226 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.001313 B = 8676.368295 C = 9154.420299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.059 4.059 3 C -0.126 4.126 4 C 0.035 3.965 5 C -0.511 4.511 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.079 3.921 14 O -0.347 6.347 15 C 0.461 3.539 16 O -0.508 6.508 17 C -0.084 4.084 18 H 0.116 0.884 19 C -0.123 4.123 20 C 0.111 3.889 21 N -0.723 5.723 22 C 0.526 3.474 23 O -0.552 6.552 24 C -0.127 4.127 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.401 0.599 41 H 0.119 0.881 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.330 1.804 -21.858 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.059 4.059 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.214 1.214 11 H -0.202 1.202 12 H -0.203 1.203 13 C 0.006 3.994 14 O -0.263 6.263 15 C 0.304 3.696 16 O -0.397 6.397 17 C -0.104 4.104 18 H 0.134 0.866 19 C -0.161 4.161 20 C -0.013 4.013 21 N -0.376 5.376 22 C 0.313 3.687 23 O -0.430 6.430 24 C -0.166 4.166 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.236 0.764 41 H 0.137 0.863 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.978 1.892 -21.522 21.809 hybrid contribution -0.194 0.175 0.691 0.739 sum -3.173 2.067 -20.831 21.172 Atomic orbital electron populations 1.21715 0.94808 1.00903 1.00884 1.20823 0.96166 0.96253 0.92675 1.21720 1.00041 0.95675 1.00921 1.19118 0.96360 0.95255 0.89423 1.21116 1.31310 1.12185 0.90301 0.92105 1.25013 0.95261 0.95072 0.99123 1.69954 1.36892 1.23043 1.23633 0.86673 0.79186 0.79795 0.82456 1.21384 1.20229 1.20253 1.23547 0.98969 0.95933 0.80966 1.86491 1.69165 1.55769 1.14830 1.23279 0.77773 0.82546 0.86036 1.90671 1.35283 1.25611 1.88130 1.21138 1.03449 0.95275 0.90526 0.86604 1.21826 1.01962 1.01042 0.91286 1.21418 1.01358 0.79618 0.98891 1.45513 1.72901 1.08173 1.10967 1.19995 0.75481 0.86672 0.86600 1.90789 1.51401 1.14921 1.85877 1.21654 1.05073 0.94770 0.95147 0.91542 0.94190 0.93790 0.93752 0.94142 0.91540 0.96368 0.96386 0.92940 0.91540 0.91542 0.89857 0.88315 0.89770 0.91086 0.76398 0.86320 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.08 37.16 0.30 -2.02 16 2 C -0.06 -1.16 0.61 -154.51 -0.09 -1.25 16 3 C -0.13 -2.34 8.08 37.15 0.30 -2.04 16 4 C 0.04 0.87 4.04 -27.89 -0.11 0.76 16 5 C -0.51 -13.61 7.65 -34.44 -0.26 -13.88 16 6 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.08 1.39 4.32 37.16 0.16 1.55 16 14 O -0.35 -5.23 8.83 -39.25 -0.35 -5.57 16 15 C 0.46 6.08 7.23 36.00 0.26 6.34 16 16 O -0.51 -8.05 15.65 -18.75 -0.29 -8.34 16 17 C -0.08 -0.75 2.71 -91.56 -0.25 -0.99 16 18 H 0.12 0.84 8.13 -51.93 -0.42 0.42 16 19 C -0.12 -0.84 4.71 -26.60 -0.13 -0.97 16 20 C 0.11 0.51 7.17 -4.49 -0.03 0.47 16 21 N -0.72 -4.97 5.45 -61.39 -0.33 -5.31 16 22 C 0.53 5.39 7.71 -11.87 -0.09 5.30 16 23 O -0.55 -8.01 17.78 5.56 0.10 -7.91 16 24 C -0.13 -1.19 5.30 -28.10 -0.15 -1.34 16 25 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 26 H 0.04 0.64 7.68 -51.93 -0.40 0.24 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 30 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 31 H 0.02 0.48 8.14 -51.92 -0.42 0.05 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.07 1.20 8.13 -51.93 -0.42 0.77 16 35 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 36 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 37 H 0.10 0.67 7.90 -51.93 -0.41 0.26 16 38 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.40 2.31 8.80 -40.82 -0.36 1.95 16 41 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.11 1.01 8.09 -51.93 -0.42 0.59 16 LS Contribution 341.80 15.07 5.15 5.15 Total: -1.00 -32.81 341.80 -6.96 -39.77 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.76 Total: -1.77 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.19 Total: -6.60 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: 0.40 Total: -30.90 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.54 Total: -21.83 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.81 -6.96 -39.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195055982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.012 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds