Wall clock time and date at job start Tue Mar 31 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99969 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00011 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.53000 * 109.46927 * 240.00054 * 2 1 3 14 14 O 1.45198 * 109.47301 * 60.00199 * 13 2 1 15 15 C 1.34226 * 117.00235 * 179.97438 * 14 13 2 16 16 O 1.20827 * 119.99724 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00369 * 180.02562 * 15 14 13 18 18 H 1.09002 * 109.66807 * 300.49941 * 17 15 14 19 19 C 1.53341 * 109.67857 * 179.97438 * 17 15 14 20 20 C 1.52917 * 108.67722 * 172.73490 * 19 17 15 21 21 N 1.45756 * 110.48780 * 50.75040 * 20 19 17 22 22 C 1.33354 * 124.10639 * 340.95068 * 21 20 19 23 23 O 1.21275 * 118.24334 * 182.17669 * 22 21 20 24 24 C 1.50173 * 123.50956 * 2.17347 * 22 21 20 25 25 H 1.08998 * 109.46768 * 300.00007 * 1 2 3 26 26 H 1.08995 * 109.47095 * 59.99957 * 1 2 3 27 27 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47384 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47386 * 300.00499 * 3 2 1 30 30 H 1.09007 * 109.47390 * 60.00059 * 3 2 1 31 31 H 1.09007 * 109.46922 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.46836 * 60.00468 * 4 2 1 33 33 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46807 * 179.97438 * 13 2 1 35 35 H 1.08992 * 109.47112 * 299.99548 * 13 2 1 36 36 H 1.09006 * 109.60211 * 292.49365 * 19 17 15 37 37 H 1.09005 * 109.60515 * 52.81309 * 19 17 15 38 38 H 1.08999 * 109.30129 * 171.06764 * 20 19 17 39 39 H 1.09002 * 109.30147 * 290.44081 * 20 19 17 40 40 H 0.97002 * 117.94327 * 160.92473 * 21 20 19 41 41 H 1.09000 * 109.41286 * 222.31767 * 24 22 21 42 42 H 1.09002 * 109.38166 * 102.58005 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9164 0.8670 2.3807 7 6 1.8712 -0.4817 3.7320 8 7 2.6273 -1.5510 3.8526 9 14 1.2491 0.3994 5.2572 10 1 1.7440 -0.3008 6.4697 11 1 1.7441 1.7993 5.2567 12 1 -0.2359 0.3994 5.2577 13 6 2.0400 -0.7212 -1.2493 14 8 1.5560 -0.0368 -2.4348 15 6 1.9170 -0.5465 -3.6229 16 8 2.6148 -1.5318 -3.6706 17 6 1.4532 0.1107 -4.8972 18 1 0.3637 0.1198 -4.9297 19 6 1.9999 -0.6605 -6.1045 20 6 1.3719 -0.0886 -7.3761 21 7 1.5128 1.3619 -7.4069 22 6 1.7650 2.1115 -6.3332 23 8 1.8216 3.3148 -6.4739 24 6 1.9826 1.5456 -4.9594 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7490 1.2492 33 1 2.8622 -1.8819 4.7337 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2492 36 1 3.0833 -0.5490 -6.1496 37 1 1.7445 -1.7160 -6.0105 38 1 1.8676 -0.5173 -8.2471 39 1 0.3136 -0.3484 -7.4036 40 1 1.4174 1.8098 -8.2620 41 1 1.4558 2.1580 -4.2276 42 1 3.0486 1.5483 -4.7317 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195055982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:58 Heat of formation + Delta-G solvation = -172.928174 kcal Electronic energy + Delta-G solvation = -22698.399428 eV Core-core repulsion = 19255.514828 eV Total energy + Delta-G solvation = -3442.884600 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.97971 -40.91937 -38.86911 -37.45139 -36.83925 -34.48052 -34.23194 -30.70916 -29.33926 -28.15699 -27.94800 -26.48441 -25.04072 -24.14392 -21.74483 -20.25183 -19.90526 -18.78686 -18.42338 -18.27187 -17.65869 -17.13822 -16.86277 -16.51032 -16.26508 -15.50386 -15.22537 -15.17936 -14.77226 -14.70606 -14.43485 -14.02200 -13.86877 -13.77916 -12.96113 -12.89640 -12.78262 -12.76435 -12.64551 -12.31366 -12.30209 -12.15496 -12.13259 -11.96169 -11.82625 -11.74146 -11.34849 -11.10612 -10.92318 -10.82541 -10.51603 -10.07270 -8.15601 -6.23191 1.11980 1.42896 1.44961 1.52001 1.54945 1.63184 2.29621 2.44346 3.19064 3.33637 3.52576 3.62864 3.69486 3.93839 3.95460 4.06006 4.15699 4.23915 4.40328 4.54137 4.60369 4.62697 4.71968 4.74926 4.84804 4.96423 5.02588 5.10393 5.14843 5.16343 5.43562 5.46995 5.47630 5.53535 5.54388 5.75419 5.83305 5.87886 6.27742 6.28724 6.69264 6.90681 7.16340 7.44482 8.96812 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.034774 B = 0.003226 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.001313 B = 8676.368295 C = 9154.420299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.056 4.056 3 C -0.120 4.120 4 C 0.041 3.959 5 C -0.516 4.516 6 H 0.071 0.929 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.958 3.042 10 H -0.289 1.289 11 H -0.267 1.267 12 H -0.266 1.266 13 C 0.089 3.911 14 O -0.345 6.345 15 C 0.461 3.539 16 O -0.536 6.536 17 C -0.073 4.073 18 H 0.141 0.859 19 C -0.123 4.123 20 C 0.114 3.886 21 N -0.710 5.710 22 C 0.527 3.473 23 O -0.602 6.602 24 C -0.124 4.124 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.053 0.947 31 H -0.011 1.011 32 H -0.010 1.010 33 H 0.261 0.739 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.409 0.591 41 H 0.116 0.884 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.853 2.514 -23.608 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.056 4.056 3 C -0.177 4.177 4 C 0.004 3.996 5 C -0.554 4.554 6 H 0.089 0.911 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.783 3.217 10 H -0.215 1.215 11 H -0.192 1.192 12 H -0.191 1.191 13 C 0.016 3.984 14 O -0.261 6.261 15 C 0.305 3.695 16 O -0.425 6.425 17 C -0.092 4.092 18 H 0.159 0.841 19 C -0.160 4.160 20 C -0.009 4.009 21 N -0.361 5.361 22 C 0.314 3.686 23 O -0.484 6.484 24 C -0.164 4.164 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.007 0.993 32 H 0.009 0.991 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.113 0.887 40 H 0.245 0.755 41 H 0.134 0.866 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.520 2.580 -23.317 23.891 hybrid contribution 0.308 -0.123 1.138 1.185 sum -4.212 2.457 -22.179 22.709 Atomic orbital electron populations 1.21643 0.93458 1.00924 1.01617 1.20630 0.97165 0.96453 0.91377 1.21652 0.99671 0.94810 1.01611 1.18974 0.94444 0.94331 0.91893 1.21523 1.30671 1.12217 0.91031 0.91105 1.25918 0.95570 0.95831 1.02613 1.70101 1.38603 1.24866 1.24267 0.85599 0.79011 0.78756 0.78304 1.21502 1.19244 1.19126 1.23106 0.98230 0.95412 0.81688 1.86480 1.69217 1.55528 1.14827 1.24174 0.76844 0.82162 0.86294 1.90669 1.36510 1.27051 1.88308 1.21265 1.04830 0.94572 0.88549 0.84133 1.21868 1.01602 1.01217 0.91342 1.21632 1.02982 0.77739 0.98553 1.45505 1.70920 1.09201 1.10446 1.20031 0.75146 0.86105 0.87325 1.90772 1.54084 1.17001 1.86579 1.21595 1.04920 0.94924 0.94947 0.92796 0.91320 0.94167 0.94357 0.91375 0.92767 0.99272 0.99122 0.93053 0.92525 0.92239 0.90778 0.87827 0.86974 0.88710 0.75486 0.86613 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.24 8.08 71.98 0.58 -3.66 16 2 C -0.06 -2.20 0.61 -52.18 -0.03 -2.23 16 3 C -0.12 -4.36 8.08 71.98 0.58 -3.78 16 4 C 0.04 2.07 4.04 29.85 0.12 2.19 16 5 C -0.52 -27.84 7.65 25.60 0.20 -27.65 16 6 H 0.07 3.61 5.68 -2.91 -0.02 3.59 16 7 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 8 N -0.94 -56.56 13.29 21.45 0.28 -56.28 16 9 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 10 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 C 0.09 3.15 4.32 71.98 0.31 3.46 16 14 O -0.34 -9.88 8.83 -51.38 -0.45 -10.33 16 15 C 0.46 11.45 7.23 71.23 0.51 11.96 16 16 O -0.54 -16.54 15.65 21.96 0.34 -16.19 16 17 C -0.07 -1.10 2.71 -11.40 -0.03 -1.13 16 18 H 0.14 1.50 8.13 -2.39 -0.02 1.48 16 19 C -0.12 -1.32 4.71 30.68 0.14 -1.18 16 20 C 0.11 0.58 7.17 86.49 0.62 1.20 16 21 N -0.71 -7.72 5.45 -467.32 -2.55 -10.27 16 22 C 0.53 9.90 7.71 87.71 0.68 10.58 16 23 O -0.60 -17.11 17.78 -3.02 -0.05 -17.16 16 24 C -0.12 -2.12 5.30 29.71 0.16 -1.96 16 25 H 0.05 2.04 6.62 -2.39 -0.02 2.02 16 26 H 0.07 2.04 7.68 -2.39 -0.02 2.02 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 2.08 7.68 -2.39 -0.02 2.06 16 30 H 0.05 2.08 6.62 -2.38 -0.02 2.06 16 31 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 32 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.06 2.09 8.13 -2.39 -0.02 2.07 16 35 H 0.06 2.16 8.13 -2.39 -0.02 2.14 16 36 H 0.07 0.96 8.12 -2.38 -0.02 0.94 16 37 H 0.10 1.09 7.90 -2.38 -0.02 1.07 16 38 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.41 3.58 8.80 -92.71 -0.82 2.77 16 41 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.10 1.85 8.09 -2.39 -0.02 1.83 16 Total: -1.00 -72.76 341.80 4.10 -68.65 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.20 Total: 7.82 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 4.30 Total: -11.86 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -2.26 Total: -66.55 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -0.16 Total: -43.68 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -72.76 4.10 -68.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195055982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.275 kcal (2) G-P(sol) polarization free energy of solvation -72.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds