Wall clock time and date at job start Tue Mar 31 2020 06:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47314 * 2 1 4 4 C 1.53000 * 109.47028 * 239.99857 * 2 1 3 5 5 C 1.50706 * 109.46894 * 60.00207 * 4 2 1 6 6 H 1.08001 * 119.99836 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99811 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00139 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99712 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46879 * 89.99646 * 9 7 5 11 11 H 1.48501 * 109.46997 * 209.99391 * 9 7 5 12 12 H 1.48492 * 109.47184 * 329.99878 * 9 7 5 13 13 C 1.53006 * 109.47328 * 120.00288 * 2 1 3 14 14 O 1.45201 * 109.46884 * 299.99882 * 13 2 1 15 15 C 1.34222 * 117.00137 * 179.97438 * 14 13 2 16 16 O 1.20833 * 119.99852 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00432 * 179.71953 * 15 14 13 18 18 H 1.09005 * 109.66610 * 59.77654 * 17 15 14 19 19 C 1.53346 * 109.67858 * 180.27555 * 17 15 14 20 20 C 1.52914 * 108.67485 * 187.26751 * 19 17 15 21 21 N 1.45757 * 110.49098 * 309.24698 * 20 19 17 22 22 C 1.33355 * 124.10219 * 19.05692 * 21 20 19 23 23 O 1.21276 * 118.24277 * 177.82257 * 22 21 20 24 24 C 1.50177 * 123.51057 * 357.81487 * 22 21 20 25 25 H 1.08999 * 109.46873 * 299.99884 * 1 2 3 26 26 H 1.08999 * 109.47400 * 59.99648 * 1 2 3 27 27 H 1.08997 * 109.47343 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46961 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47020 * 300.00200 * 3 2 1 30 30 H 1.08999 * 109.47056 * 60.00227 * 3 2 1 31 31 H 1.08997 * 109.47366 * 179.97438 * 4 2 1 32 32 H 1.08997 * 109.47587 * 300.00483 * 4 2 1 33 33 H 0.96998 * 120.00042 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.46911 * 179.97438 * 13 2 1 35 35 H 1.08997 * 109.46745 * 59.99850 * 13 2 1 36 36 H 1.08999 * 109.60192 * 307.02875 * 19 17 15 37 37 H 1.08997 * 109.59664 * 67.34590 * 19 17 15 38 38 H 1.09005 * 109.30057 * 69.56075 * 20 19 17 39 39 H 1.09006 * 109.30010 * 189.13806 * 20 19 17 40 40 H 0.96993 * 117.94885 * 199.07372 * 21 20 19 41 41 H 1.09001 * 109.38489 * 257.42522 * 24 22 21 42 42 H 1.09004 * 109.40572 * 137.68451 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 2.6263 -1.5515 -3.8527 9 14 1.2470 0.3981 -5.2572 10 1 2.2250 1.4397 -5.6619 11 1 1.0817 -0.5814 -6.3611 12 1 -0.0610 1.0356 -4.9610 13 6 2.0400 -0.7213 1.2492 14 8 1.5561 -0.0369 2.4348 15 6 1.9163 -0.5472 3.6228 16 8 2.6134 -1.5330 3.6705 17 6 1.4571 0.1132 4.8971 18 1 0.3677 0.1230 4.9334 19 6 2.0069 -0.6558 6.1045 20 6 1.3835 -0.0805 7.3768 21 7 1.5258 1.3698 7.4039 22 6 1.7752 2.1169 6.3278 23 8 1.8334 3.3204 6.4656 24 6 1.9881 1.5477 4.9545 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1299 -0.7209 -1.2495 32 1 1.6766 -1.7489 -1.2493 33 1 2.8600 -1.8833 -4.7337 34 1 3.1300 -0.7217 1.2489 35 1 1.6767 -1.7490 1.2491 36 1 1.7479 -1.7108 6.0150 37 1 3.0908 -0.5476 6.1441 38 1 0.3251 -0.3393 7.4082 39 1 1.8841 -0.5050 8.2470 40 1 1.4336 1.8197 8.2582 41 1 3.0533 1.5490 4.7235 42 1 1.4594 2.1591 4.2231 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195055996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:02 Heat of formation + Delta-G solvation = -151.821005 kcal Electronic energy + Delta-G solvation = -22698.676997 eV Core-core repulsion = 19256.707673 eV Total energy + Delta-G solvation = -3441.969325 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03324 -39.94974 -37.51098 -36.54167 -35.44946 -33.60594 -32.34367 -30.06470 -27.49173 -26.72151 -26.43275 -25.50964 -23.79868 -22.81459 -20.68393 -19.59653 -18.32842 -17.82065 -17.48041 -16.71355 -16.36754 -16.01442 -15.90394 -15.41765 -14.68735 -14.56050 -14.41629 -13.78882 -13.63819 -13.48518 -13.10915 -12.55523 -12.39897 -12.19026 -12.10600 -12.04983 -11.52496 -11.48088 -11.29188 -10.98490 -10.85622 -10.71627 -10.62449 -10.38156 -10.34547 -10.23915 -10.01046 -9.77020 -9.48396 -9.23496 -8.96828 -8.38463 -6.02732 -4.03921 2.18525 2.32897 2.72770 2.89881 3.30644 3.37489 3.40016 4.07632 4.21976 4.31373 4.34890 4.44967 4.77573 4.85407 4.90455 5.15173 5.28226 5.32979 5.41742 5.44816 5.47107 5.52933 5.69734 5.78133 6.00389 6.15720 6.34690 6.38249 6.48786 6.58744 6.68881 6.75946 6.92813 7.08761 7.09365 7.11428 7.58151 7.69793 7.82611 7.86085 7.95833 8.37479 9.00462 9.59422 11.08926 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.034751 B = 0.003228 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.534761 B = 8672.919740 C = 9151.542946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.059 4.059 3 C -0.126 4.126 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.079 3.921 14 O -0.347 6.347 15 C 0.461 3.539 16 O -0.508 6.508 17 C -0.084 4.084 18 H 0.116 0.884 19 C -0.123 4.123 20 C 0.111 3.889 21 N -0.723 5.723 22 C 0.526 3.474 23 O -0.552 6.552 24 C -0.127 4.127 25 H 0.039 0.961 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.260 0.740 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.401 0.599 41 H 0.107 0.893 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 1.823 21.879 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.059 4.059 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.006 3.994 14 O -0.262 6.262 15 C 0.304 3.696 16 O -0.397 6.397 17 C -0.104 4.104 18 H 0.134 0.866 19 C -0.161 4.161 20 C -0.013 4.013 21 N -0.376 5.376 22 C 0.312 3.688 23 O -0.430 6.430 24 C -0.166 4.166 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.236 0.764 41 H 0.125 0.875 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.980 1.912 21.545 21.834 hybrid contribution -0.180 0.170 -0.697 0.740 sum -3.161 2.081 20.848 21.189 Atomic orbital electron populations 1.21715 0.94806 1.00899 1.00890 1.20823 0.96166 0.96251 0.92671 1.21721 1.00037 0.95678 1.00923 1.19126 0.96370 0.95271 0.89443 1.21154 1.31250 1.12133 0.90287 0.92052 1.25013 0.95286 0.95062 0.99134 1.69961 1.37010 1.23025 1.23519 0.86615 0.79268 0.79395 0.82868 1.20707 1.21324 1.19843 1.23547 0.98972 0.95937 0.80964 1.86491 1.69204 1.55721 1.14829 1.23280 0.77741 0.82578 0.86038 1.90673 1.35263 1.25632 1.88132 1.21138 1.03463 0.95260 0.90528 0.86610 1.21824 1.01976 1.01032 0.91285 1.21432 1.01355 0.79604 0.98883 1.45518 1.72961 1.08205 1.10890 1.19997 0.75471 0.86694 0.86592 1.90789 1.51357 1.14895 1.85950 1.21654 1.05079 0.94747 0.95156 0.94200 0.91528 0.93795 0.93750 0.91538 0.94140 0.96360 0.96365 0.93001 0.91536 0.91547 0.88338 0.89837 0.91056 0.89776 0.76399 0.87471 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.08 37.16 0.30 -2.02 16 2 C -0.06 -1.16 0.61 -154.51 -0.09 -1.25 16 3 C -0.13 -2.34 8.08 37.16 0.30 -2.04 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.84 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.08 1.39 4.32 37.16 0.16 1.55 16 14 O -0.35 -5.22 8.82 -39.24 -0.35 -5.57 16 15 C 0.46 6.08 7.23 36.00 0.26 6.34 16 16 O -0.51 -8.05 15.65 -18.76 -0.29 -8.34 16 17 C -0.08 -0.74 2.71 -91.56 -0.25 -0.99 16 18 H 0.12 0.84 8.13 -51.93 -0.42 0.42 16 19 C -0.12 -0.84 4.70 -26.60 -0.13 -0.97 16 20 C 0.11 0.51 7.17 -4.49 -0.03 0.47 16 21 N -0.72 -4.97 5.45 -61.39 -0.33 -5.31 16 22 C 0.53 5.39 7.71 -11.87 -0.09 5.30 16 23 O -0.55 -8.02 17.78 5.56 0.10 -7.92 16 24 C -0.13 -1.19 5.30 -28.10 -0.15 -1.34 16 25 H 0.04 0.64 7.68 -51.93 -0.40 0.24 16 26 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 30 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 34 H 0.07 1.20 8.13 -51.93 -0.42 0.77 16 35 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 36 H 0.10 0.66 7.90 -51.93 -0.41 0.25 16 37 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 38 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.40 2.31 8.80 -40.82 -0.36 1.95 16 41 H 0.11 1.01 8.09 -51.93 -0.42 0.59 16 42 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -32.83 341.81 -6.96 -39.79 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.76 Total: -1.80 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.19 Total: -6.59 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.40 Total: -30.89 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.54 Total: -21.83 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.83 -6.96 -39.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195055996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.035 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds