Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47462 * 2 1 4 4 C 1.50707 * 109.47060 * 240.00034 * 2 1 3 5 5 H 1.08002 * 120.00030 * 235.36987 * 4 2 1 6 6 C 1.37877 * 119.99770 * 55.37473 * 4 2 1 7 7 N 1.31512 * 119.99646 * 198.50010 * 6 4 2 8 8 Si 1.86803 * 120.00248 * 18.50229 * 6 4 2 9 9 H 1.48500 * 109.47306 * 84.44562 * 8 6 4 10 10 H 1.48499 * 109.46932 * 204.44998 * 8 6 4 11 11 H 1.48507 * 109.46621 * 324.44912 * 8 6 4 12 12 C 1.52999 * 109.47044 * 120.00629 * 2 1 3 13 13 N 1.46507 * 109.46744 * 299.99712 * 12 2 1 14 14 C 1.34774 * 119.99812 * 180.02562 * 13 12 2 15 15 O 1.21283 * 120.00207 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.00164 * 180.02562 * 14 13 12 17 17 H 1.09004 * 110.05403 * 27.46092 * 16 14 13 18 18 C 1.54259 * 110.03383 * 148.88371 * 16 14 13 19 19 C 1.54893 * 104.19451 * 142.89574 * 18 16 14 20 20 C 1.54879 * 102.74886 * 322.05571 * 19 18 16 21 21 C 1.53872 * 110.03018 * 266.05329 * 16 14 13 22 22 H 1.08999 * 110.07712 * 121.40233 * 21 16 14 23 23 C 1.50701 * 110.03328 * 359.97438 * 21 16 14 24 24 O 1.20831 * 120.00101 * 274.32753 * 23 21 16 25 25 O 1.34227 * 120.00397 * 94.60455 * 23 21 16 26 26 H 1.08992 * 109.47061 * 308.30562 * 1 2 3 27 27 H 1.09003 * 109.46536 * 68.30500 * 1 2 3 28 28 H 1.08999 * 109.47132 * 188.30209 * 1 2 3 29 29 H 1.08988 * 109.47363 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47048 * 300.00508 * 3 2 1 31 31 H 1.09007 * 109.46677 * 59.99782 * 3 2 1 32 32 H 0.97006 * 119.99463 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47292 * 180.02562 * 12 2 1 34 34 H 1.08993 * 109.47707 * 59.99935 * 12 2 1 35 35 H 0.97001 * 120.00095 * 0.02562 * 13 12 2 36 36 H 1.08997 * 110.48777 * 24.21539 * 18 16 14 37 37 H 1.09003 * 110.48702 * 261.56991 * 18 16 14 38 38 H 1.08998 * 110.75391 * 203.73746 * 19 18 16 39 39 H 1.09000 * 110.75526 * 80.37301 * 19 18 16 40 40 H 1.09006 * 110.48549 * 279.26940 * 20 19 18 41 41 H 1.09002 * 110.60554 * 156.67628 * 20 19 18 42 42 H 0.96691 * 117.00585 * 179.72379 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.7135 -1.5429 -1.1332 6 6 1.6224 -0.2975 -2.4805 7 7 1.7477 -1.1027 -3.5128 8 14 0.8893 1.4055 -2.7078 9 1 1.9821 2.3957 -2.8827 10 1 0.0176 1.4127 -3.9101 11 1 0.0852 1.7619 -1.5112 12 6 2.0400 -0.7214 1.2492 13 7 1.5516 -0.0308 2.4454 14 6 1.8776 -0.4910 3.6694 15 8 2.5748 -1.4771 3.7807 16 6 1.3748 0.2190 4.9000 17 1 0.4360 0.7276 4.6807 18 6 1.1729 -0.7916 6.0478 19 6 1.6089 -0.0175 7.3166 20 6 2.8213 0.8055 6.8151 21 6 2.4229 1.2345 5.3878 22 1 1.9936 2.2362 5.4051 23 6 3.6292 1.2054 4.4849 24 8 4.5109 0.4027 4.6803 25 8 3.7267 2.0749 3.4669 26 1 -0.3633 0.6370 0.8064 27 1 -0.3632 0.3799 -0.9549 28 1 -0.3633 -1.0169 0.1484 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.4596 -0.8120 -4.3923 33 1 3.1300 -0.7210 1.2494 34 1 1.6767 -1.7490 1.2491 35 1 0.9937 0.7577 2.3564 36 1 1.8039 -1.6680 5.8999 37 1 0.1249 -1.0827 6.1198 38 1 1.9097 -0.7070 8.1054 39 1 0.8110 0.6405 7.6608 40 1 3.7185 0.1870 6.7910 41 1 2.9787 1.6801 7.4463 42 1 4.5207 2.0206 2.9177 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315889635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = -129.078400 kcal Electronic energy + Delta-G solvation = -23956.451703 eV Core-core repulsion = 20515.468572 eV Total energy + Delta-G solvation = -3440.983131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03462 -39.18577 -37.52396 -36.41668 -35.89055 -33.32860 -31.55890 -29.92710 -29.45814 -26.36571 -25.94622 -24.88950 -23.45094 -21.51762 -20.71447 -19.52538 -19.00951 -18.22895 -17.38210 -16.38903 -16.20011 -15.89359 -15.32363 -15.11477 -14.90228 -14.42172 -14.38064 -13.53887 -13.20717 -13.08489 -12.93154 -12.66198 -12.27453 -12.21088 -12.02899 -11.82728 -11.64034 -11.39820 -11.29636 -11.23525 -11.11275 -10.83639 -10.45767 -10.45231 -10.34366 -10.19368 -10.03953 -9.50021 -9.17209 -8.70649 -8.53406 -8.39762 -6.17921 -4.12264 2.21156 2.79985 2.96367 3.22247 3.30391 3.36737 3.58686 4.13975 4.34587 4.36445 4.67816 5.02647 5.06854 5.12722 5.13789 5.18562 5.24957 5.32158 5.40949 5.65240 5.75487 5.81201 5.87721 5.98910 6.04803 6.06784 6.22353 6.37130 6.49160 6.52307 6.57810 6.62335 6.70015 6.77350 6.95856 7.22502 7.41993 7.72028 7.89775 7.94303 8.42638 8.56858 8.89652 9.47840 10.95162 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029160 B = 0.004753 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.981562 B = 5889.331190 C = 6101.879355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.030 3.970 3 C -0.143 4.143 4 C -0.517 4.517 5 H 0.075 0.925 6 C 0.078 3.922 7 N -0.886 5.886 8 Si 0.875 3.125 9 H -0.285 1.285 10 H -0.303 1.303 11 H -0.244 1.244 12 C 0.143 3.857 13 N -0.716 5.716 14 C 0.494 3.506 15 O -0.527 6.527 16 C -0.102 4.102 17 H 0.102 0.898 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.071 4.071 22 H 0.110 0.890 23 C 0.472 3.528 24 O -0.492 6.492 25 O -0.513 6.513 26 H 0.022 0.978 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.397 0.603 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.894 8.555 19.370 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 C -0.201 4.201 4 C -0.554 4.554 5 H 0.093 0.907 6 C -0.125 4.125 7 N -0.523 5.523 8 Si 0.706 3.294 9 H -0.212 1.212 10 H -0.231 1.231 11 H -0.170 1.170 12 C 0.021 3.979 13 N -0.367 5.367 14 C 0.278 3.722 15 O -0.403 6.403 16 C -0.124 4.124 17 H 0.120 0.880 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.154 4.154 21 C -0.091 4.091 22 H 0.128 0.872 23 C 0.312 3.688 24 O -0.378 6.378 25 O -0.325 6.325 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.232 0.768 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -2.504 7.578 19.510 21.079 hybrid contribution -0.090 1.378 -0.988 1.698 sum -2.594 8.957 18.522 20.737 Atomic orbital electron populations 1.22344 0.97829 0.99949 0.99976 1.18696 0.92461 0.92335 0.93636 1.22292 1.00910 0.98244 0.98608 1.20683 1.29652 1.16866 0.88230 0.90715 1.24944 0.94632 0.96928 0.95951 1.70006 1.46946 1.34788 1.00524 0.87518 0.79328 0.85827 0.76712 1.21240 1.23133 1.16992 1.21491 0.98359 0.95827 0.82215 1.46351 1.52662 1.31718 1.06012 1.20409 0.81567 0.85403 0.84814 1.90727 1.37281 1.25833 1.86498 1.21949 0.98535 0.96680 0.95251 0.88008 1.22404 1.02411 0.98413 0.91873 1.22457 0.97095 0.98578 0.97510 1.22478 1.00356 1.00739 0.91797 1.21576 0.91570 1.01573 0.94338 0.87206 1.23223 0.88109 0.77671 0.79774 1.90746 1.40420 1.36298 1.70375 1.84499 1.49199 1.56917 1.41844 0.95917 0.92407 0.93395 0.93114 0.94079 0.95097 0.92573 0.92362 0.91940 0.76826 0.89062 0.90750 0.90608 0.91072 0.89233 0.90636 0.72995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 7.50 37.16 0.28 -2.62 16 2 C 0.03 0.65 0.50 -155.66 -0.08 0.57 16 3 C -0.14 -2.83 7.67 37.16 0.28 -2.54 16 4 C -0.52 -13.84 8.61 -34.44 -0.30 -14.13 16 5 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 6 C 0.08 2.17 5.26 -17.82 -0.09 2.08 16 7 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 8 Si 0.87 20.63 22.90 -169.99 -3.89 16.74 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.24 -5.20 4.58 56.52 0.26 -4.94 16 12 C 0.14 2.89 4.50 -4.04 -0.02 2.88 16 13 N -0.72 -11.64 5.00 -60.29 -0.30 -11.94 16 14 C 0.49 8.03 4.94 -10.98 -0.05 7.97 16 15 O -0.53 -10.84 15.05 -2.25 -0.03 -10.87 16 16 C -0.10 -1.17 3.29 -90.66 -0.30 -1.47 16 17 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 18 C -0.11 -1.19 6.31 -25.07 -0.16 -1.35 16 19 C -0.12 -0.95 6.91 -24.74 -0.17 -1.12 16 20 C -0.12 -1.09 6.31 -25.07 -0.16 -1.25 16 21 C -0.07 -0.75 3.40 -90.65 -0.31 -1.06 16 22 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 23 C 0.47 6.54 5.44 36.01 0.20 6.74 16 24 O -0.49 -8.66 15.81 -22.53 -0.36 -9.02 16 25 O -0.51 -6.24 13.42 -39.25 -0.53 -6.76 16 26 H 0.02 0.37 7.10 -51.93 -0.37 0.01 16 27 H 0.06 1.24 3.86 -51.93 -0.20 1.04 16 28 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 29 H 0.05 0.99 8.14 -51.94 -0.42 0.57 16 30 H 0.04 0.86 2.72 -51.93 -0.14 0.72 16 31 H 0.03 0.50 6.86 -51.93 -0.36 0.15 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.40 5.60 6.24 -40.82 -0.25 5.35 16 36 H 0.09 1.23 6.89 -51.93 -0.36 0.87 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 1.07 6.90 -51.93 -0.36 0.71 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.41 4.03 9.10 45.56 0.41 4.44 16 LS Contribution 322.96 15.07 4.87 4.87 Total: -1.00 -33.79 322.96 -5.89 -39.68 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.55 Total: 8.25 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -0.88 Total: -5.31 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.47 Total: -37.57 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.92 Total: -26.66 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -3.89 Total: 16.74 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.79 -5.89 -39.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315889635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.398 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds