Wall clock time and date at job start Tue Mar 31 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47462 * 2 1 4 4 C 1.50707 * 109.47060 * 240.00034 * 2 1 3 5 5 H 1.08002 * 120.00030 * 235.36987 * 4 2 1 6 6 C 1.37877 * 119.99770 * 55.37473 * 4 2 1 7 7 N 1.31512 * 119.99646 * 198.50010 * 6 4 2 8 8 Si 1.86803 * 120.00248 * 18.50229 * 6 4 2 9 9 H 1.48500 * 109.47306 * 84.44562 * 8 6 4 10 10 H 1.48499 * 109.46932 * 204.44998 * 8 6 4 11 11 H 1.48507 * 109.46621 * 324.44912 * 8 6 4 12 12 C 1.52999 * 109.47044 * 120.00629 * 2 1 3 13 13 N 1.46507 * 109.46744 * 299.99712 * 12 2 1 14 14 C 1.34774 * 119.99812 * 180.02562 * 13 12 2 15 15 O 1.21283 * 120.00207 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.00164 * 180.02562 * 14 13 12 17 17 H 1.09004 * 110.05403 * 27.46092 * 16 14 13 18 18 C 1.54259 * 110.03383 * 148.88371 * 16 14 13 19 19 C 1.54893 * 104.19451 * 142.89574 * 18 16 14 20 20 C 1.54879 * 102.74886 * 322.05571 * 19 18 16 21 21 C 1.53872 * 110.03018 * 266.05329 * 16 14 13 22 22 H 1.08999 * 110.07712 * 121.40233 * 21 16 14 23 23 C 1.50701 * 110.03328 * 359.97438 * 21 16 14 24 24 O 1.20831 * 120.00101 * 274.32753 * 23 21 16 25 25 O 1.34227 * 120.00397 * 94.60455 * 23 21 16 26 26 H 1.08992 * 109.47061 * 308.30562 * 1 2 3 27 27 H 1.09003 * 109.46536 * 68.30500 * 1 2 3 28 28 H 1.08999 * 109.47132 * 188.30209 * 1 2 3 29 29 H 1.08988 * 109.47363 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47048 * 300.00508 * 3 2 1 31 31 H 1.09007 * 109.46677 * 59.99782 * 3 2 1 32 32 H 0.97006 * 119.99463 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47292 * 180.02562 * 12 2 1 34 34 H 1.08993 * 109.47707 * 59.99935 * 12 2 1 35 35 H 0.97001 * 120.00095 * 0.02562 * 13 12 2 36 36 H 1.08997 * 110.48777 * 24.21539 * 18 16 14 37 37 H 1.09003 * 110.48702 * 261.56991 * 18 16 14 38 38 H 1.08998 * 110.75391 * 203.73746 * 19 18 16 39 39 H 1.09000 * 110.75526 * 80.37301 * 19 18 16 40 40 H 1.09006 * 110.48549 * 279.26940 * 20 19 18 41 41 H 1.09002 * 110.60554 * 156.67628 * 20 19 18 42 42 H 0.96691 * 117.00585 * 179.72379 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.7135 -1.5429 -1.1332 6 6 1.6224 -0.2975 -2.4805 7 7 1.7477 -1.1027 -3.5128 8 14 0.8893 1.4055 -2.7078 9 1 1.9821 2.3957 -2.8827 10 1 0.0176 1.4127 -3.9101 11 1 0.0852 1.7619 -1.5112 12 6 2.0400 -0.7214 1.2492 13 7 1.5516 -0.0308 2.4454 14 6 1.8776 -0.4910 3.6694 15 8 2.5748 -1.4771 3.7807 16 6 1.3748 0.2190 4.9000 17 1 0.4360 0.7276 4.6807 18 6 1.1729 -0.7916 6.0478 19 6 1.6089 -0.0175 7.3166 20 6 2.8213 0.8055 6.8151 21 6 2.4229 1.2345 5.3878 22 1 1.9936 2.2362 5.4051 23 6 3.6292 1.2054 4.4849 24 8 4.5109 0.4027 4.6803 25 8 3.7267 2.0749 3.4669 26 1 -0.3633 0.6370 0.8064 27 1 -0.3632 0.3799 -0.9549 28 1 -0.3633 -1.0169 0.1484 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.4596 -0.8120 -4.3923 33 1 3.1300 -0.7210 1.2494 34 1 1.6767 -1.7490 1.2491 35 1 0.9937 0.7577 2.3564 36 1 1.8039 -1.6680 5.8999 37 1 0.1249 -1.0827 6.1198 38 1 1.9097 -0.7070 8.1054 39 1 0.8110 0.6405 7.6608 40 1 3.7185 0.1870 6.7910 41 1 2.9787 1.6801 7.4463 42 1 4.5207 2.0206 2.9177 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315889635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:34 Heat of formation + Delta-G solvation = -155.247631 kcal Electronic energy + Delta-G solvation = -23957.586486 eV Core-core repulsion = 20515.468572 eV Total energy + Delta-G solvation = -3442.117914 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.10419 -40.45516 -38.77937 -37.76777 -36.96405 -35.01654 -33.46871 -30.78993 -30.34472 -27.96728 -27.49911 -26.87212 -24.43786 -22.66490 -21.52799 -20.98641 -20.39316 -19.31265 -18.54352 -18.04732 -17.40503 -17.28857 -16.77033 -16.47005 -15.95791 -15.86520 -15.45190 -14.84646 -14.78651 -14.61527 -14.31627 -14.09888 -14.01615 -13.70189 -13.14357 -13.01486 -12.59981 -12.51051 -12.40965 -12.29616 -12.17209 -11.99924 -11.95309 -11.91046 -11.73287 -11.62940 -11.40904 -11.13996 -10.78971 -10.58241 -10.35381 -10.02192 -8.32280 -6.31505 1.16911 1.36746 1.39617 1.51306 1.56960 1.99829 2.35325 2.35715 3.03832 3.34883 3.55101 3.78581 4.08425 4.16883 4.29696 4.32810 4.39498 4.43432 4.45656 4.46800 4.50079 4.74057 4.81137 4.83747 4.86355 4.93762 5.02101 5.08635 5.14934 5.17381 5.21665 5.22539 5.42782 5.50210 5.55513 5.63334 5.72075 5.81298 6.29514 6.61935 6.71994 6.95033 7.30004 7.32374 8.85276 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029160 B = 0.004753 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.981562 B = 5889.331190 C = 6101.879355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.030 3.970 3 C -0.140 4.140 4 C -0.525 4.525 5 H 0.020 0.980 6 C 0.019 3.981 7 N -0.944 5.944 8 Si 0.937 3.063 9 H -0.281 1.281 10 H -0.312 1.312 11 H -0.193 1.193 12 C 0.161 3.839 13 N -0.703 5.703 14 C 0.489 3.511 15 O -0.579 6.579 16 C -0.096 4.096 17 H 0.148 0.852 18 C -0.118 4.118 19 C -0.107 4.107 20 C -0.118 4.118 21 C -0.069 4.069 22 H 0.155 0.845 23 C 0.465 3.535 24 O -0.543 6.543 25 O -0.507 6.507 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.265 0.735 33 H 0.030 0.970 34 H 0.033 0.967 35 H 0.414 0.586 36 H 0.048 0.952 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.052 0.948 41 H 0.105 0.895 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 12.681 22.138 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.029 3.971 3 C -0.197 4.197 4 C -0.563 4.563 5 H 0.038 0.962 6 C -0.179 4.179 7 N -0.583 5.583 8 Si 0.765 3.235 9 H -0.209 1.209 10 H -0.241 1.241 11 H -0.117 1.117 12 C 0.037 3.963 13 N -0.356 5.356 14 C 0.276 3.724 15 O -0.459 6.459 16 C -0.117 4.117 17 H 0.166 0.834 18 C -0.156 4.156 19 C -0.144 4.144 20 C -0.156 4.156 21 C -0.088 4.088 22 H 0.173 0.827 23 C 0.308 3.692 24 O -0.433 6.433 25 O -0.319 6.319 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.252 0.748 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.070 0.930 41 H 0.124 0.876 42 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -5.478 11.749 22.315 25.807 hybrid contribution 0.949 -0.068 -1.845 2.076 sum -4.529 11.681 20.470 24.000 Atomic orbital electron populations 1.22271 0.95884 1.00585 1.01216 1.18627 0.93849 0.93359 0.91285 1.22200 1.00754 0.96355 1.00427 1.20997 1.28471 1.15750 0.91052 0.96202 1.25881 0.95465 1.01252 0.95281 1.70170 1.49480 1.37356 1.01250 0.86516 0.79085 0.79862 0.78075 1.20858 1.24147 1.11670 1.20939 0.96594 0.94842 0.83913 1.46094 1.52758 1.31898 1.04837 1.21407 0.80293 0.84766 0.85941 1.90721 1.39453 1.28424 1.87255 1.22128 1.00363 0.96830 0.92361 0.83425 1.22443 1.02928 0.97167 0.93066 1.22468 0.97291 0.98559 0.96123 1.22519 0.99512 1.01581 0.91940 1.21873 0.89774 1.03537 0.93653 0.82684 1.24082 0.88552 0.76668 0.79852 1.90740 1.42585 1.38291 1.71634 1.84479 1.49640 1.56249 1.41545 0.91058 0.93344 0.94439 0.93765 0.94543 0.90598 0.92660 0.95142 0.94856 0.74825 0.93296 0.88554 0.90410 0.87461 0.92950 0.87616 0.72175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 7.50 71.98 0.54 -4.75 16 2 C 0.03 1.26 0.50 -52.93 -0.03 1.24 16 3 C -0.14 -5.04 7.67 71.98 0.55 -4.49 16 4 C -0.52 -29.23 8.61 25.60 0.22 -29.01 16 5 H 0.02 1.27 7.99 -2.91 -0.02 1.25 16 6 C 0.02 1.08 5.26 84.66 0.45 1.52 16 7 N -0.94 -58.80 13.96 21.45 0.30 -58.50 16 8 Si 0.94 41.61 22.90 68.60 1.57 43.18 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.31 -14.33 7.11 99.48 0.71 -13.62 16 11 H -0.19 -7.07 4.58 99.48 0.46 -6.61 16 12 C 0.16 6.61 4.50 86.38 0.39 6.99 16 13 N -0.70 -21.23 5.00 -463.06 -2.32 -23.54 16 14 C 0.49 15.23 4.94 87.66 0.43 15.66 16 15 O -0.58 -24.66 15.05 4.43 0.07 -24.60 16 16 C -0.10 -1.81 3.29 -10.82 -0.04 -1.84 16 17 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 18 C -0.12 -2.17 6.31 31.67 0.20 -1.97 16 19 C -0.11 -1.30 6.91 31.88 0.22 -1.08 16 20 C -0.12 -1.85 6.31 31.67 0.20 -1.65 16 21 C -0.07 -1.18 3.40 -10.81 -0.04 -1.21 16 22 H 0.16 1.32 8.14 -2.39 -0.02 1.30 16 23 C 0.47 12.15 5.44 71.24 0.39 12.53 16 24 O -0.54 -19.57 15.81 25.56 0.40 -19.17 16 25 O -0.51 -11.05 13.42 -51.38 -0.69 -11.74 16 26 H 0.07 1.96 7.10 -2.39 -0.02 1.94 16 27 H 0.05 1.89 3.86 -2.39 -0.01 1.88 16 28 H 0.04 1.45 8.13 -2.39 -0.02 1.43 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.36 2.72 -2.39 -0.01 1.35 16 31 H 0.08 2.05 6.86 -2.38 -0.02 2.03 16 32 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 33 H 0.03 1.39 8.14 -2.39 -0.02 1.38 16 34 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.41 9.51 6.24 -92.71 -0.58 8.94 16 36 H 0.05 1.33 6.89 -2.39 -0.02 1.31 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.05 1.23 6.90 -2.38 -0.02 1.22 16 41 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.42 7.70 9.10 -74.06 -0.67 7.02 16 Total: -1.00 -82.43 322.96 2.37 -80.06 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -0.45 Total: 22.37 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 3.49 Total: -8.06 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -2.02 Total: -82.05 kcal Atomic # 8 Polarization: -55.28 SS G_CDS: -0.22 Total: -55.50 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.57 Total: 43.18 kcal Total: -82.43 2.37 -80.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315889635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.186 kcal (2) G-P(sol) polarization free energy of solvation -82.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds