Wall clock time and date at job start Tue Mar 31 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47418 * 2 1 4 4 C 1.50709 * 109.47059 * 239.99816 * 2 1 3 5 5 H 1.07994 * 119.99773 * 240.00456 * 4 2 1 6 6 C 1.37875 * 119.99952 * 59.99981 * 4 2 1 7 7 N 1.31521 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00160 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47249 * 90.00039 * 8 6 4 10 10 H 1.48500 * 109.47451 * 210.00396 * 8 6 4 11 11 H 1.48501 * 109.47045 * 330.00229 * 8 6 4 12 12 C 1.52997 * 109.47021 * 120.00388 * 2 1 3 13 13 N 1.46505 * 109.46679 * 299.99611 * 12 2 1 14 14 C 1.34776 * 119.99687 * 179.97438 * 13 12 2 15 15 O 1.21276 * 120.00332 * 0.02562 * 14 13 12 16 16 C 1.50709 * 119.99746 * 180.02562 * 14 13 12 17 17 H 1.09003 * 110.53466 * 302.61480 * 16 14 13 18 18 C 1.54463 * 110.65945 * 65.24115 * 16 14 13 19 19 C 1.53877 * 106.68421 * 142.05352 * 18 16 14 20 20 C 1.54265 * 106.59605 * 0.15594 * 19 18 16 21 21 H 1.09006 * 110.48556 * 95.06998 * 20 19 18 22 22 C 1.50702 * 110.59970 * 217.65480 * 20 19 18 23 23 O 1.20829 * 120.00196 * 114.83948 * 22 20 19 24 24 O 1.34233 * 119.99916 * 294.84688 * 22 20 19 25 25 C 1.54887 * 104.20056 * 336.39127 * 20 19 18 26 26 H 1.08995 * 109.47002 * 300.00188 * 1 2 3 27 27 H 1.09003 * 109.46997 * 59.99795 * 1 2 3 28 28 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47161 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47204 * 300.00078 * 3 2 1 31 31 H 1.08995 * 109.47188 * 59.99926 * 3 2 1 32 32 H 0.96997 * 119.99992 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47425 * 179.97438 * 12 2 1 34 34 H 1.08998 * 109.47117 * 59.99226 * 12 2 1 35 35 H 0.96997 * 120.00257 * 0.02562 * 13 12 2 36 36 H 1.08999 * 109.85715 * 22.81147 * 18 16 14 37 37 H 1.09003 * 110.15968 * 261.45778 * 18 16 14 38 38 H 1.08995 * 110.02951 * 240.87549 * 19 18 16 39 39 H 1.08993 * 110.03177 * 119.44086 * 19 18 16 40 40 H 0.96699 * 116.99314 * 179.97438 * 24 22 20 41 41 H 1.09002 * 110.75856 * 156.25785 * 25 20 19 42 42 H 1.09006 * 110.75640 * 279.44771 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2395 -2.4828 7 7 0.9436 0.8301 -2.6035 8 14 2.3213 -1.1205 -4.0080 9 1 1.3427 -2.1618 -4.4119 10 1 2.4866 -0.1416 -5.1123 11 1 3.6292 -1.7585 -3.7122 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8768 -0.4915 3.6694 15 8 2.5740 -1.4775 3.7808 16 6 1.3740 0.2187 4.9000 17 1 1.6892 1.2621 4.8949 18 6 -0.1647 0.1214 4.9948 19 6 -0.5047 -0.0615 6.4844 20 6 0.8371 -0.0653 7.2454 21 1 1.0650 0.9321 7.6218 22 6 0.8018 -1.0594 8.3775 23 8 1.5282 -2.0247 8.3567 24 8 -0.0368 -0.8727 9.4088 25 6 1.8769 -0.4934 6.1803 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 0.7095 1.1617 -3.4844 33 1 3.1299 -0.7218 1.2490 34 1 1.6765 -1.7489 1.2492 35 1 0.9937 0.7578 2.3564 36 1 -0.5173 -0.7370 4.4232 37 1 -0.6229 1.0353 4.6167 38 1 -1.0224 -1.0086 6.6356 39 1 -1.1273 0.7640 6.8293 40 1 -0.0238 -1.5374 10.1110 41 1 2.8733 -0.1438 6.4507 42 1 1.8713 -1.5753 6.0480 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315929140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:55 Heat of formation + Delta-G solvation = -154.775030 kcal Electronic energy + Delta-G solvation = -22694.724529 eV Core-core repulsion = 19252.627108 eV Total energy + Delta-G solvation = -3442.097421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.79224 -39.56401 -37.35282 -36.33263 -36.12555 -33.28809 -31.09002 -29.92154 -29.03204 -25.73996 -25.71401 -25.04179 -23.46798 -21.70591 -20.29131 -19.63252 -18.78932 -18.23929 -17.52048 -16.53859 -16.25675 -15.75067 -15.28775 -15.04461 -14.67336 -14.39190 -13.94740 -13.57327 -13.34055 -12.93168 -12.72548 -12.34623 -12.18842 -12.02117 -11.81218 -11.50350 -11.40014 -11.28224 -11.18779 -11.04139 -10.90328 -10.85220 -10.69669 -10.56802 -10.39462 -10.20762 -9.64508 -9.51470 -9.20264 -8.79322 -8.45384 -8.30652 -6.03048 -4.13015 1.97298 2.75381 3.04410 3.27887 3.34903 3.38951 3.73075 4.20181 4.26006 4.40141 4.61764 5.05051 5.06511 5.11536 5.20543 5.23816 5.26148 5.32995 5.49213 5.64819 5.77944 5.94907 6.03477 6.18693 6.23877 6.30816 6.33058 6.50251 6.78272 6.80927 6.92745 7.00854 7.04170 7.34632 7.54550 7.65348 7.68733 8.00058 8.06199 8.15505 8.37942 8.72059 8.88015 9.52943 10.98348 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.042683 B = 0.003137 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.848205 B = 8922.726686 C = 9195.499178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.715 5.715 14 C 0.510 3.490 15 O -0.549 6.549 16 C -0.116 4.116 17 H 0.102 0.898 18 C -0.115 4.115 19 C -0.107 4.107 20 C -0.089 4.089 21 H 0.114 0.886 22 C 0.484 3.516 23 O -0.508 6.508 24 O -0.518 6.518 25 C -0.089 4.089 26 H 0.006 0.994 27 H 0.085 0.915 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.006 0.994 32 H 0.260 0.740 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.398 0.602 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.408 0.592 41 H 0.078 0.922 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.750 3.305 18.853 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.366 5.366 14 C 0.295 3.705 15 O -0.427 6.427 16 C -0.137 4.137 17 H 0.120 0.880 18 C -0.153 4.153 19 C -0.145 4.145 20 C -0.108 4.108 21 H 0.132 0.868 22 C 0.326 3.674 23 O -0.395 6.395 24 O -0.330 6.330 25 C -0.127 4.127 26 H 0.025 0.975 27 H 0.104 0.896 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.025 0.975 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.233 0.767 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.267 0.733 41 H 0.097 0.903 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.128 2.733 18.423 19.077 hybrid contribution 0.072 -0.484 -0.420 0.645 sum -4.056 2.248 18.003 18.591 Atomic orbital electron populations 1.21826 0.97769 0.99140 1.00063 1.18349 0.92778 0.92743 0.90582 1.21827 0.98592 0.98359 1.00065 1.21002 1.31455 1.12086 0.89935 0.92454 1.24876 0.94870 0.94910 0.98846 1.69803 1.36766 1.22722 1.23215 0.86574 0.79345 0.79393 0.82583 1.20715 1.21265 1.19902 1.21714 0.98142 0.95787 0.83519 1.46313 1.52507 1.31754 1.05988 1.20312 0.80698 0.84790 0.84675 1.90682 1.38511 1.26655 1.86872 1.22195 0.96689 1.01054 0.93797 0.87982 1.22165 0.93619 1.03485 0.96056 1.22060 0.94805 1.03177 0.94434 1.21951 0.99243 0.98048 0.91569 0.86783 1.23443 0.76059 0.85731 0.82195 1.90757 1.40295 1.30561 1.77914 1.84550 1.60451 1.55146 1.32869 1.22323 0.96986 1.03194 0.90156 0.97487 0.89615 0.95490 0.95455 0.89603 0.97493 0.93017 0.92765 0.92796 0.76728 0.90616 0.90183 0.91109 0.90058 0.73346 0.90329 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.90 8.08 37.15 0.30 -2.60 16 4 C -0.51 -13.22 8.01 -34.44 -0.28 -13.49 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.44 9.35 55.43 0.52 -22.92 16 8 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.13 2.76 4.50 -4.04 -0.02 2.74 16 13 N -0.72 -12.28 4.95 -60.29 -0.30 -12.58 16 14 C 0.51 8.52 7.00 -10.98 -0.08 8.44 16 15 O -0.55 -11.47 15.71 5.56 0.09 -11.38 16 16 C -0.12 -1.35 3.26 -90.00 -0.29 -1.64 16 17 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 18 C -0.12 -1.11 6.37 -25.51 -0.16 -1.27 16 19 C -0.11 -0.87 6.37 -25.61 -0.16 -1.04 16 20 C -0.09 -0.80 3.36 -90.11 -0.30 -1.10 16 21 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 22 C 0.48 4.98 7.49 36.01 0.27 5.25 16 23 O -0.51 -7.16 16.48 -18.75 -0.31 -7.46 16 24 O -0.52 -3.83 13.42 -39.26 -0.53 -4.36 16 25 C -0.09 -1.06 4.97 -24.74 -0.12 -1.18 16 26 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 27 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 31 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 32 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.40 6.06 6.16 -40.82 -0.25 5.81 16 36 H 0.08 0.85 7.83 -51.93 -0.41 0.45 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.61 7.83 -51.93 -0.41 0.21 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.41 1.41 9.10 45.56 0.41 1.82 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.10 1.48 6.77 -51.93 -0.35 1.13 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -31.51 336.82 -6.88 -38.39 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.69 Total: 5.20 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -0.72 Total: -5.63 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.22 Total: -35.50 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.75 Total: -23.20 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.51 -6.88 -38.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315929140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.384 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds