Wall clock time and date at job start Tue Mar 31 2020 05:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47034 * 2 1 4 4 C 1.50696 * 109.47194 * 240.00419 * 2 1 3 5 5 H 1.08006 * 119.99561 * 239.99755 * 4 2 1 6 6 C 1.37881 * 120.00176 * 59.99585 * 4 2 1 7 7 N 1.31512 * 119.99559 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99931 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47349 * 59.99864 * 8 6 4 10 10 H 1.48503 * 109.47044 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47037 * 299.99963 * 8 6 4 12 12 C 1.53002 * 109.47630 * 119.99860 * 2 1 3 13 13 N 1.46502 * 109.46832 * 300.00590 * 12 2 1 14 14 C 1.34784 * 119.99564 * 179.97438 * 13 12 2 15 15 O 1.21278 * 120.00109 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00020 * 179.97438 * 14 13 12 17 17 H 1.09004 * 115.55056 * 356.84990 * 16 14 13 18 18 C 1.52994 * 117.50443 * 142.55914 * 16 14 13 19 19 H 1.08995 * 117.50467 * 214.98139 * 18 16 14 20 20 C 1.50705 * 117.49467 * 359.97438 * 18 16 14 21 21 O 1.20827 * 119.99465 * 116.89436 * 20 18 16 22 22 O 1.34228 * 120.00284 * 296.89950 * 20 18 16 23 23 C 1.52995 * 60.00061 * 107.48813 * 18 16 14 24 24 C 1.52998 * 117.50250 * 252.51185 * 23 18 16 25 25 C 1.53005 * 117.51598 * 107.47917 * 23 18 16 26 26 H 1.09001 * 109.47326 * 59.99905 * 1 2 3 27 27 H 1.09005 * 109.46770 * 299.99445 * 1 2 3 28 28 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46812 * 59.99870 * 3 2 1 30 30 H 1.08994 * 109.47265 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47142 * 300.00208 * 3 2 1 32 32 H 0.97001 * 119.99473 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46693 * 59.99567 * 12 2 1 34 34 H 1.08994 * 109.47458 * 180.02562 * 12 2 1 35 35 H 0.96996 * 120.00576 * 359.97438 * 13 12 2 36 36 H 0.96699 * 116.99798 * 180.02562 * 22 20 18 37 37 H 1.09006 * 109.46986 * 129.01281 * 24 23 18 38 38 H 1.08995 * 109.47090 * 249.00672 * 24 23 18 39 39 H 1.09001 * 109.47292 * 9.00810 * 24 23 18 40 40 H 1.09002 * 109.46860 * 351.38019 * 25 23 18 41 41 H 1.09009 * 109.46842 * 111.37479 * 25 23 18 42 42 H 1.08990 * 109.47295 * 231.37342 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9426 0.8297 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.8259 -2.5201 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1206 -4.0082 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8770 -0.4914 3.6695 15 8 2.5736 -1.4779 3.7808 16 6 1.3751 0.2192 4.9000 17 1 0.8002 1.1271 4.7170 18 6 0.9734 -0.6421 6.0989 19 1 0.1339 -0.3013 6.7048 20 6 1.1093 -2.1365 5.9587 21 8 1.8740 -2.7430 6.6709 22 8 0.3809 -2.7937 5.0425 23 6 2.2607 0.1833 6.1471 24 6 3.5879 -0.5715 6.0496 25 6 2.2715 1.4244 7.0419 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 0.7086 1.1613 -3.4843 33 1 1.6768 -1.7488 1.2493 34 1 3.1301 -0.7208 1.2494 35 1 0.9943 0.7582 2.3565 36 1 0.5021 -3.7516 4.9902 37 1 4.2077 -0.1181 5.2759 38 1 4.1065 -0.5198 7.0069 39 1 3.3954 -1.6140 5.7965 40 1 1.2634 1.6157 7.4099 41 1 2.9409 1.2579 7.8860 42 1 2.6178 2.2834 6.4674 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315999962.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:43 Heat of formation + Delta-G solvation = -113.279779 kcal Electronic energy + Delta-G solvation = -23388.271899 eV Core-core repulsion = 19947.973848 eV Total energy + Delta-G solvation = -3440.298052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00964 -39.19270 -37.49246 -36.16959 -35.80734 -33.30074 -30.95404 -29.87591 -27.56096 -26.46420 -25.73979 -25.37068 -24.43127 -22.14743 -19.95659 -19.16239 -18.65223 -17.96073 -17.27703 -16.06909 -15.95880 -15.53335 -15.12030 -14.69692 -14.50032 -14.10836 -13.76224 -13.62655 -13.12717 -12.92933 -12.71981 -12.66144 -12.31204 -12.21078 -12.06021 -11.60200 -11.39410 -11.21142 -11.18472 -10.85822 -10.74439 -10.58131 -10.40121 -10.31787 -10.21285 -10.01695 -9.64781 -9.53793 -9.23437 -8.80912 -8.46095 -8.31796 -6.03207 -4.13315 2.22025 2.60136 3.01455 3.29327 3.33681 3.36965 3.57568 3.74011 4.35901 4.39483 4.52304 4.68883 4.88111 5.12517 5.23575 5.32816 5.36971 5.46834 5.59925 5.74779 5.85472 5.96481 6.05285 6.21881 6.31373 6.47118 6.49413 6.67975 6.77118 6.81082 6.92006 7.00632 7.02085 7.34039 7.54260 7.68022 7.99629 8.01183 8.02594 8.13666 8.37107 8.66519 8.87053 9.52484 10.98150 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.004030 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.584260 B = 6946.244035 C = 7282.076873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.134 3.866 13 N -0.707 5.707 14 C 0.534 3.466 15 O -0.545 6.545 16 C -0.166 4.166 17 H 0.130 0.870 18 C -0.132 4.132 19 H 0.147 0.853 20 C 0.524 3.476 21 O -0.510 6.510 22 O -0.506 6.506 23 C -0.059 4.059 24 C -0.125 4.125 25 C -0.117 4.117 26 H 0.085 0.915 27 H 0.006 0.994 28 H 0.026 0.974 29 H 0.006 0.994 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.398 0.602 36 H 0.410 0.590 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 2.086 16.170 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.012 3.988 13 N -0.357 5.357 14 C 0.319 3.681 15 O -0.424 6.424 16 C -0.187 4.187 17 H 0.148 0.852 18 C -0.151 4.151 19 H 0.165 0.835 20 C 0.367 3.633 21 O -0.398 6.398 22 O -0.317 6.317 23 C -0.060 4.060 24 C -0.182 4.182 25 C -0.174 4.174 26 H 0.104 0.896 27 H 0.025 0.975 28 H 0.046 0.954 29 H 0.025 0.975 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.233 0.767 36 H 0.268 0.732 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.487 1.755 16.261 16.423 hybrid contribution -0.076 -0.628 -1.051 1.227 sum -1.562 1.127 15.210 15.332 Atomic orbital electron populations 1.21824 0.97701 0.99197 1.00056 1.18357 0.92837 0.92742 0.90545 1.21830 0.98568 0.98361 1.00075 1.20938 1.31548 1.12112 0.89903 0.92546 1.24871 0.94837 0.94918 0.98825 1.69793 1.36579 1.22740 1.23329 0.86635 0.79234 0.79804 0.82190 1.20284 1.21318 1.20296 1.21720 0.98043 0.95811 0.83264 1.46192 1.52122 1.31632 1.05721 1.19319 0.80548 0.84299 0.83912 1.90658 1.38686 1.26582 1.86458 1.22698 1.05059 1.01580 0.89372 0.85243 1.22043 1.02870 0.87227 1.03001 0.83544 1.21887 0.76073 0.89357 0.76014 1.90667 1.35654 1.69206 1.44316 1.84511 1.63414 1.27740 1.56013 1.21658 0.91785 0.96909 0.95607 1.21607 0.93081 1.02244 1.01270 1.21447 1.02559 0.94788 0.98601 0.89623 0.97491 0.95439 0.97504 0.95466 0.89601 0.92952 0.92667 0.92765 0.76673 0.73191 0.92018 0.92362 0.89260 0.91882 0.91195 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 4 C -0.51 -13.15 8.01 -34.44 -0.28 -13.42 16 5 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.37 9.35 55.43 0.52 -22.85 16 8 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.13 2.80 4.50 -4.04 -0.02 2.78 16 13 N -0.71 -12.26 4.96 -60.29 -0.30 -12.56 16 14 C 0.53 8.93 6.82 -10.98 -0.07 8.86 16 15 O -0.54 -10.71 12.28 -1.57 -0.02 -10.73 16 16 C -0.17 -2.05 5.91 -91.78 -0.54 -2.59 16 17 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.13 -1.55 5.89 -91.77 -0.54 -2.09 16 19 H 0.15 1.23 8.05 -51.93 -0.42 0.81 16 20 C 0.52 7.60 5.26 36.01 0.19 7.79 16 21 O -0.51 -8.53 15.79 -18.75 -0.30 -8.83 16 22 O -0.51 -6.87 12.78 -42.88 -0.55 -7.42 16 23 C -0.06 -0.68 2.70 -154.51 -0.42 -1.09 16 24 C -0.13 -1.74 7.81 37.16 0.29 -1.45 16 25 C -0.12 -0.94 9.85 37.16 0.37 -0.57 16 26 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 27 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 32 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.40 6.21 6.16 -40.82 -0.25 5.96 16 36 H 0.41 4.06 9.10 45.56 0.41 4.47 16 37 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 38 H 0.06 0.70 7.93 -51.93 -0.41 0.29 16 39 H 0.09 1.52 4.13 -51.93 -0.21 1.31 16 40 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 41 H 0.07 0.52 7.93 -51.92 -0.41 0.11 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 334.66 15.07 5.04 5.04 Total: -1.00 -30.57 334.66 -6.76 -37.33 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.54 Total: 8.56 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -0.59 Total: -4.13 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.22 Total: -35.41 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.86 Total: -26.98 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.57 -6.76 -37.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315999962.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.952 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds