Wall clock time and date at job start Tue Mar 31 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47030 * 2 1 4 4 C 1.50699 * 109.47228 * 120.00037 * 2 1 3 5 5 H 1.08001 * 119.99877 * 122.20357 * 4 2 1 6 6 C 1.37883 * 120.00182 * 301.92823 * 4 2 1 7 7 N 1.31516 * 119.99492 * 353.83693 * 6 4 2 8 8 Si 1.86794 * 119.99863 * 173.83698 * 6 4 2 9 9 H 1.48499 * 109.47423 * 94.98776 * 8 6 4 10 10 H 1.48506 * 109.46923 * 214.98454 * 8 6 4 11 11 H 1.48497 * 109.47399 * 334.98416 * 8 6 4 12 12 C 1.52997 * 109.47117 * 239.99917 * 2 1 3 13 13 N 1.46501 * 109.46786 * 60.00164 * 12 2 1 14 14 C 1.34779 * 119.99749 * 179.97438 * 13 12 2 15 15 O 1.21284 * 120.00109 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99937 * 179.97438 * 14 13 12 17 17 H 1.09001 * 115.55189 * 34.28232 * 16 14 13 18 18 C 1.53002 * 117.49862 * 248.60955 * 16 14 13 19 19 H 1.08995 * 117.50067 * 0.02562 * 18 16 14 20 20 C 1.50708 * 117.49593 * 145.02161 * 18 16 14 21 21 O 1.20825 * 120.00211 * 2.88759 * 20 18 16 22 22 O 1.34231 * 119.99461 * 182.89066 * 20 18 16 23 23 C 1.53005 * 60.00155 * 252.50787 * 18 16 14 24 24 C 1.52995 * 117.50173 * 252.51043 * 23 18 16 25 25 C 1.52995 * 117.49495 * 107.48463 * 23 18 16 26 26 H 1.09002 * 109.46978 * 299.99353 * 1 2 3 27 27 H 1.08998 * 109.47189 * 59.99906 * 1 2 3 28 28 H 1.09003 * 109.47049 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47312 * 173.82352 * 3 2 1 30 30 H 1.08995 * 109.47334 * 293.82370 * 3 2 1 31 31 H 1.09006 * 109.47025 * 53.82968 * 3 2 1 32 32 H 0.97000 * 119.99124 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47383 * 179.97438 * 12 2 1 34 34 H 1.09000 * 109.47513 * 300.00207 * 12 2 1 35 35 H 0.96996 * 120.00598 * 359.97438 * 13 12 2 36 36 H 0.96707 * 116.99778 * 180.02562 * 22 20 18 37 37 H 1.08996 * 109.47224 * 134.57766 * 24 23 18 38 38 H 1.08994 * 109.47356 * 254.58219 * 24 23 18 39 39 H 1.09006 * 109.47166 * 14.58498 * 24 23 18 40 40 H 1.08997 * 109.47507 * 351.38581 * 25 23 18 41 41 H 1.09008 * 109.46813 * 111.38022 * 25 23 18 42 42 H 1.09002 * 109.47416 * 231.37848 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6823 -1.5673 1.1317 6 6 1.6668 -0.2630 2.4824 7 7 0.9811 0.8522 2.6078 8 14 2.1455 -1.2409 4.0002 9 1 3.4072 -0.6960 4.5626 10 1 1.0665 -1.1389 5.0154 11 1 2.3433 -2.6652 3.6294 12 6 2.0400 -0.7213 -1.2492 13 7 1.5516 -0.0306 -2.4453 14 6 1.8776 -0.4907 -3.6695 15 8 2.5757 -1.4763 -3.7808 16 6 1.3748 0.2194 -4.8999 17 1 1.2865 1.3024 -4.8146 18 6 0.3415 -0.5079 -5.7626 19 1 0.0250 -1.4998 -5.4400 20 6 -0.7202 0.3281 -6.4297 21 8 -0.7023 1.5309 -6.3158 22 8 -1.6858 -0.2635 -7.1504 23 6 1.7799 -0.3518 -6.2604 24 6 2.0302 0.6410 -7.3972 25 6 2.6643 -1.6002 -6.2673 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1243 1.4445 0.1106 30 1 1.7697 1.9234 -0.9400 31 1 1.5892 1.9872 0.8296 32 1 0.7236 1.1667 3.4885 33 1 3.1300 -0.7209 -1.2495 34 1 1.6766 -1.7489 -1.2493 35 1 0.9937 0.7578 -2.3564 36 1 -2.3445 0.3142 -7.5598 37 1 2.9043 1.2486 -7.1630 38 1 2.2049 0.0953 -8.3244 39 1 1.1598 1.2867 -7.5140 40 1 2.1494 -2.4132 -5.7554 41 1 2.8718 -1.8927 -7.2967 42 1 3.6019 -1.3842 -5.7550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315999969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:50 Heat of formation + Delta-G solvation = -115.821692 kcal Electronic energy + Delta-G solvation = -22954.221647 eV Core-core repulsion = 19513.813370 eV Total energy + Delta-G solvation = -3440.408277 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09966 -39.56199 -37.55590 -36.34526 -35.93334 -33.31773 -30.98992 -29.81485 -27.64715 -26.60387 -25.74003 -25.42310 -24.57660 -21.92714 -19.99469 -19.37334 -18.69460 -18.36845 -17.28765 -16.31374 -16.01505 -15.70229 -15.18566 -14.70141 -14.59289 -14.09385 -13.83401 -13.62259 -13.21207 -12.90821 -12.77239 -12.62589 -12.47954 -12.21637 -11.98013 -11.81965 -11.51374 -11.43356 -11.20579 -10.88849 -10.78234 -10.68533 -10.50131 -10.37681 -10.21671 -10.13105 -9.64059 -9.48414 -9.18954 -8.80761 -8.47130 -8.32354 -6.03602 -4.12343 1.79258 2.47060 2.93333 3.27308 3.35074 3.39067 3.52595 3.70608 4.37350 4.38668 4.41583 4.70841 4.87951 5.04007 5.22616 5.23706 5.38438 5.49061 5.65452 5.72702 5.85016 5.90829 6.05305 6.20473 6.24166 6.30001 6.44757 6.49690 6.75340 6.81915 6.91232 6.99321 7.01187 7.34222 7.54532 7.66474 7.68954 7.98199 8.00734 8.13064 8.36490 8.63212 8.87882 9.53068 10.98448 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027482 B = 0.003719 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.622060 B = 7526.381444 C = 7979.819645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.129 4.129 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.132 3.868 13 N -0.709 5.709 14 C 0.534 3.466 15 O -0.542 6.542 16 C -0.148 4.148 17 H 0.135 0.865 18 C -0.146 4.146 19 H 0.140 0.860 20 C 0.514 3.486 21 O -0.511 6.511 22 O -0.510 6.510 23 C -0.055 4.055 24 C -0.130 4.130 25 C -0.104 4.104 26 H 0.082 0.918 27 H 0.008 0.992 28 H 0.027 0.973 29 H 0.029 0.971 30 H 0.005 0.995 31 H 0.084 0.916 32 H 0.260 0.740 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.400 0.600 36 H 0.411 0.589 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.583 -0.025 -18.291 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.187 4.187 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.010 3.990 13 N -0.359 5.359 14 C 0.318 3.682 15 O -0.420 6.420 16 C -0.169 4.169 17 H 0.153 0.847 18 C -0.165 4.165 19 H 0.158 0.842 20 C 0.357 3.643 21 O -0.399 6.399 22 O -0.322 6.322 23 C -0.055 4.055 24 C -0.187 4.187 25 C -0.161 4.161 26 H 0.101 0.899 27 H 0.027 0.973 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.024 0.976 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.235 0.765 36 H 0.270 0.730 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.867 -0.547 -17.962 18.067 hybrid contribution -0.698 0.391 0.798 1.130 sum -2.565 -0.156 -17.164 17.356 Atomic orbital electron populations 1.21805 0.97809 0.99148 1.00028 1.18368 0.92729 0.92863 0.90609 1.21853 0.99435 0.98420 0.98970 1.20965 1.30086 1.13721 0.89867 0.92419 1.24878 0.94976 0.94744 0.98819 1.69845 1.38877 1.20321 1.23208 0.86578 0.78056 0.80648 0.82727 1.20818 1.21204 1.19832 1.21742 0.98222 0.95774 0.83269 1.46319 1.51932 1.31815 1.05811 1.19355 0.80853 0.84212 0.83755 1.90679 1.38494 1.26338 1.86513 1.22611 1.01453 1.01043 0.91810 0.84683 1.21981 0.88973 1.01153 1.04441 0.84216 1.22204 0.80310 0.86501 0.75274 1.90725 1.74181 1.16087 1.58953 1.84515 1.39061 1.45783 1.62844 1.21691 0.91230 0.99127 0.93489 1.21568 1.03065 0.97901 0.96138 1.21417 0.99811 0.94196 1.00653 0.89939 0.97347 0.95377 0.95217 0.97628 0.89730 0.93033 0.92555 0.92576 0.76507 0.72999 0.90888 0.91295 0.91723 0.91010 0.93006 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.06 37.16 0.30 -2.62 16 2 C 0.05 1.26 0.50 -155.67 -0.08 1.19 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.51 -13.21 8.00 -34.44 -0.28 -13.48 16 5 H 0.06 1.51 7.75 -52.49 -0.41 1.11 16 6 C 0.07 1.77 5.13 -17.82 -0.09 1.67 16 7 N -0.88 -23.55 9.47 55.43 0.52 -23.02 16 8 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.13 2.75 4.50 -4.04 -0.02 2.73 16 13 N -0.71 -12.43 4.90 -60.29 -0.30 -12.72 16 14 C 0.53 8.81 7.59 -10.98 -0.08 8.73 16 15 O -0.54 -10.18 13.10 5.55 0.07 -10.11 16 16 C -0.15 -1.95 5.42 -91.77 -0.50 -2.45 16 17 H 0.14 1.73 7.67 -51.93 -0.40 1.33 16 18 C -0.15 -1.72 5.65 -91.76 -0.52 -2.24 16 19 H 0.14 1.62 8.05 -51.93 -0.42 1.20 16 20 C 0.51 5.85 6.94 36.01 0.25 6.10 16 21 O -0.51 -6.94 15.77 -18.75 -0.30 -7.24 16 22 O -0.51 -4.44 13.42 -39.26 -0.53 -4.96 16 23 C -0.05 -0.62 2.70 -154.51 -0.42 -1.04 16 24 C -0.13 -1.25 9.59 37.15 0.36 -0.89 16 25 C -0.10 -1.22 8.09 37.15 0.30 -0.92 16 26 H 0.08 2.05 6.16 -51.93 -0.32 1.73 16 27 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.00 0.10 6.71 -51.93 -0.35 -0.25 16 31 H 0.08 2.10 6.20 -51.93 -0.32 1.78 16 32 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.40 6.56 6.16 -40.82 -0.25 6.30 16 36 H 0.41 1.70 9.10 45.56 0.41 2.11 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.55 8.02 -51.93 -0.42 0.13 16 39 H 0.06 0.67 5.62 -51.93 -0.29 0.38 16 40 H 0.07 0.93 7.01 -51.93 -0.36 0.57 16 41 H 0.05 0.49 7.99 -51.92 -0.42 0.07 16 42 H 0.08 1.04 7.26 -51.93 -0.38 0.66 16 LS Contribution 337.38 15.07 5.08 5.08 Total: -1.00 -29.45 337.38 -6.45 -35.90 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.52 Total: 7.30 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.47 Total: -5.84 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.23 Total: -35.74 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.75 Total: -22.31 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.45 -6.45 -35.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315999969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.924 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds