Wall clock time and date at job start Tue Mar 31 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.46962 * 2 1 4 4 C 1.50700 * 109.47280 * 239.99740 * 2 1 3 5 5 H 1.07999 * 120.00274 * 239.99753 * 4 2 1 6 6 C 1.37876 * 119.99698 * 60.00364 * 4 2 1 7 7 N 1.31507 * 120.00187 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99660 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47428 * 59.99948 * 8 6 4 10 10 H 1.48500 * 109.47100 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47484 * 299.99452 * 8 6 4 12 12 C 1.52998 * 109.47074 * 119.99751 * 2 1 3 13 13 N 1.46501 * 109.47365 * 300.00249 * 12 2 1 14 14 C 1.34773 * 120.00135 * 179.97438 * 13 12 2 15 15 O 1.21276 * 120.00229 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99827 * 179.97438 * 14 13 12 17 17 H 1.08998 * 115.55342 * 325.72268 * 16 14 13 18 18 C 1.53000 * 117.49719 * 111.39313 * 16 14 13 19 19 H 1.09001 * 117.49891 * 359.97438 * 18 16 14 20 20 C 1.50698 * 117.49638 * 214.97775 * 18 16 14 21 21 O 1.20820 * 120.00322 * 357.62796 * 20 18 16 22 22 O 1.34231 * 120.00080 * 177.90192 * 20 18 16 23 23 C 1.53000 * 60.03287 * 107.48117 * 18 16 14 24 24 C 1.52991 * 117.50588 * 107.50503 * 23 18 16 25 25 C 1.53007 * 117.49466 * 252.52487 * 23 18 16 26 26 H 1.08997 * 109.47628 * 300.00255 * 1 2 3 27 27 H 1.09001 * 109.47451 * 60.00274 * 1 2 3 28 28 H 1.09004 * 109.47338 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46743 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46919 * 299.99616 * 3 2 1 31 31 H 1.08994 * 109.46809 * 60.00132 * 3 2 1 32 32 H 0.97001 * 120.00124 * 180.02562 * 7 6 4 33 33 H 1.09006 * 109.47326 * 179.97438 * 12 2 1 34 34 H 1.09004 * 109.47301 * 60.00296 * 12 2 1 35 35 H 0.97003 * 119.99605 * 359.97438 * 13 12 2 36 36 H 0.96697 * 117.00551 * 179.72118 * 22 20 18 37 37 H 1.08999 * 109.47736 * 117.84771 * 24 23 18 38 38 H 1.08999 * 109.47274 * 237.85330 * 24 23 18 39 39 H 1.09006 * 109.46772 * 357.84665 * 24 23 18 40 40 H 1.09006 * 109.46990 * 8.60599 * 25 23 18 41 41 H 1.08999 * 109.47033 * 128.60730 * 25 23 18 42 42 H 1.09003 * 109.46870 * 248.60793 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8281 -2.5199 -4.0081 10 1 1.8271 -0.4200 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 6 2.0399 -0.7212 1.2493 13 7 1.5515 -0.0306 2.4454 14 6 1.8767 -0.4913 3.6695 15 8 2.5740 -1.4773 3.7809 16 6 1.3748 0.2195 4.8999 17 1 1.2880 1.3026 4.8147 18 6 0.3403 -0.5064 5.7624 19 1 0.0224 -1.4978 5.4397 20 6 -0.7202 0.3311 6.4295 21 8 -0.7059 1.5331 6.3080 22 8 -1.6776 -0.2579 7.1631 23 6 1.7786 -0.3530 6.2610 24 6 2.0302 0.6387 7.3985 25 6 2.6610 -1.6030 6.2678 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7082 1.1608 -3.4844 33 1 3.1300 -0.7216 1.2491 34 1 1.6766 -1.7489 1.2493 35 1 0.9941 0.7583 2.3564 36 1 -2.3337 0.3209 7.5750 37 1 2.4176 0.1054 8.2665 38 1 2.7568 1.3846 7.0762 39 1 1.0953 1.1328 7.6631 40 1 2.1448 -2.4149 5.7553 41 1 3.5990 -1.3884 5.7558 42 1 2.8676 -1.8963 7.2971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315999971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:53 Heat of formation + Delta-G solvation = -115.706413 kcal Electronic energy + Delta-G solvation = -22953.616244 eV Core-core repulsion = 19513.212966 eV Total energy + Delta-G solvation = -3440.403278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09854 -39.56122 -37.55058 -36.34281 -35.93785 -33.32209 -30.98735 -29.81913 -27.65148 -26.60013 -25.73333 -25.42605 -24.57787 -21.92938 -19.99092 -19.37294 -18.69567 -18.36194 -17.28535 -16.31405 -16.02909 -15.69733 -15.18604 -14.70361 -14.60154 -14.09532 -13.81079 -13.62091 -13.21594 -12.91585 -12.77620 -12.63989 -12.48180 -12.21888 -11.98447 -11.79291 -11.51288 -11.39681 -11.19538 -10.87155 -10.79530 -10.73435 -10.50023 -10.37622 -10.20938 -10.13169 -9.64360 -9.48415 -9.18357 -8.80318 -8.47475 -8.33146 -6.02550 -4.13037 1.79279 2.46683 2.93695 3.29600 3.34138 3.37060 3.52295 3.70763 4.37115 4.38618 4.41698 4.70558 4.86862 5.04266 5.22730 5.24092 5.37891 5.47834 5.65375 5.73623 5.84449 5.90027 6.05149 6.20905 6.23969 6.30043 6.44535 6.49682 6.75147 6.82541 6.92045 7.00521 7.00627 7.34200 7.54822 7.66517 7.68432 7.99943 8.01050 8.13784 8.37141 8.63312 8.87354 9.52841 10.98784 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027712 B = 0.003717 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.135213 B = 7531.735231 C = 8004.035896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.709 5.709 14 C 0.534 3.466 15 O -0.542 6.542 16 C -0.148 4.148 17 H 0.135 0.865 18 C -0.146 4.146 19 H 0.140 0.860 20 C 0.514 3.486 21 O -0.511 6.511 22 O -0.511 6.511 23 C -0.055 4.055 24 C -0.126 4.126 25 C -0.104 4.104 26 H 0.006 0.994 27 H 0.086 0.914 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.085 0.915 31 H 0.006 0.994 32 H 0.261 0.739 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.400 0.600 36 H 0.411 0.589 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.411 0.057 18.241 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.010 3.990 13 N -0.359 5.359 14 C 0.318 3.682 15 O -0.420 6.420 16 C -0.169 4.169 17 H 0.153 0.847 18 C -0.165 4.165 19 H 0.158 0.842 20 C 0.357 3.643 21 O -0.399 6.399 22 O -0.322 6.322 23 C -0.056 4.056 24 C -0.183 4.183 25 C -0.161 4.161 26 H 0.025 0.975 27 H 0.104 0.896 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.025 0.975 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.235 0.765 36 H 0.270 0.730 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.696 -0.461 17.905 17.991 hybrid contribution -0.632 0.426 -0.781 1.091 sum -2.328 -0.035 17.124 17.282 Atomic orbital electron populations 1.21831 0.97749 0.99150 1.00134 1.18360 0.92813 0.92796 0.90545 1.21834 0.98577 0.98327 1.00143 1.20934 1.31612 1.12137 0.89881 0.92491 1.24876 0.94836 0.94906 0.98843 1.69792 1.36536 1.22721 1.23349 0.86632 0.79238 0.79781 0.82189 1.20289 1.21330 1.20272 1.21754 0.98211 0.95778 0.83287 1.46310 1.51966 1.31775 1.05803 1.19354 0.80845 0.84222 0.83758 1.90676 1.38522 1.26325 1.86510 1.22634 1.01461 1.01037 0.91797 0.84681 1.22000 0.88936 1.01140 1.04450 0.84224 1.22195 0.80251 0.86513 0.75356 1.90729 1.73899 1.16120 1.59143 1.84513 1.39697 1.45842 1.62172 1.21709 0.91275 0.99122 0.93470 1.21549 1.02610 0.97950 0.96199 1.21437 0.99831 0.94147 1.00654 0.97495 0.89582 0.95460 0.95423 0.89588 0.97464 0.92932 0.92555 0.92612 0.76511 0.73003 0.91172 0.90966 0.92130 0.91016 0.90363 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.15 0.30 -2.65 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 4 C -0.51 -13.18 8.01 -34.44 -0.28 -13.46 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.56 9.35 55.43 0.52 -23.04 16 8 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 C 0.13 2.75 4.50 -4.04 -0.02 2.73 16 13 N -0.71 -12.45 4.96 -60.29 -0.30 -12.75 16 14 C 0.53 8.83 7.59 -10.99 -0.08 8.74 16 15 O -0.54 -10.19 13.11 5.56 0.07 -10.12 16 16 C -0.15 -1.96 5.43 -91.73 -0.50 -2.46 16 17 H 0.14 1.73 7.67 -51.93 -0.40 1.33 16 18 C -0.15 -1.72 5.65 -91.77 -0.52 -2.24 16 19 H 0.14 1.62 8.05 -51.93 -0.42 1.20 16 20 C 0.51 5.87 6.73 36.00 0.24 6.11 16 21 O -0.51 -6.97 16.06 -18.75 -0.30 -7.27 16 22 O -0.51 -4.45 13.42 -39.26 -0.53 -4.98 16 23 C -0.05 -0.63 2.70 -154.47 -0.42 -1.05 16 24 C -0.13 -1.21 9.74 37.15 0.36 -0.85 16 25 C -0.10 -1.22 8.09 37.16 0.30 -0.92 16 26 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 27 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 31 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 32 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.40 6.58 6.16 -40.82 -0.25 6.33 16 36 H 0.41 1.71 9.10 45.56 0.41 2.13 16 37 H 0.07 0.56 7.83 -51.93 -0.41 0.15 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.61 5.66 -51.93 -0.29 0.32 16 40 H 0.07 0.93 7.02 -51.93 -0.36 0.57 16 41 H 0.08 1.04 7.26 -51.93 -0.38 0.66 16 42 H 0.05 0.49 7.87 -51.93 -0.41 0.08 16 LS Contribution 337.25 15.07 5.08 5.08 Total: -1.00 -29.40 337.25 -6.45 -35.85 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.50 Total: 7.45 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.48 Total: -5.84 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.22 Total: -35.79 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.76 Total: -22.37 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.40 -6.45 -35.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315999971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.852 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds