Wall clock time and date at job start Tue Mar 31 2020 05:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47218 * 2 1 4 4 C 1.53010 * 109.47162 * 185.00605 * 3 2 1 5 5 C 1.52992 * 109.46944 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47416 * 59.99729 * 5 4 3 7 7 N 1.46507 * 109.46968 * 60.00033 * 6 5 4 8 8 C 1.34775 * 119.99876 * 180.02562 * 7 6 5 9 9 O 1.21683 * 120.00208 * 359.97438 * 8 7 6 10 10 C 1.46373 * 119.99634 * 179.97438 * 8 7 6 11 11 H 1.08002 * 120.00452 * 0.02562 * 10 8 7 12 12 C 1.40050 * 119.99716 * 179.71971 * 10 8 7 13 13 N 1.30674 * 120.00151 * 0.28083 * 12 10 8 14 14 Si 1.86803 * 119.99913 * 180.27503 * 12 10 8 15 15 H 1.48504 * 109.47118 * 60.00511 * 14 12 10 16 16 H 1.48504 * 109.47036 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47374 * 300.00617 * 14 12 10 18 18 C 1.50700 * 109.47362 * 179.97438 * 6 5 4 19 19 O 1.20821 * 120.00110 * 24.99872 * 18 6 5 20 20 O 1.34232 * 120.00036 * 204.99967 * 18 6 5 21 21 C 1.45200 * 116.99831 * 180.02562 * 20 18 6 22 22 C 1.52996 * 109.47207 * 300.00125 * 6 5 4 23 23 C 1.52996 * 109.47166 * 65.00524 * 3 2 1 24 24 H 1.08997 * 109.47438 * 59.99950 * 1 2 3 25 25 H 1.09003 * 109.47475 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47064 * 299.99693 * 1 2 3 27 27 H 1.09001 * 109.47064 * 240.00306 * 2 1 3 28 28 H 1.09001 * 109.47670 * 120.00491 * 2 1 3 29 29 H 1.09003 * 109.47049 * 305.00269 * 3 2 1 30 30 H 1.09001 * 109.47172 * 59.99859 * 4 3 2 31 31 H 1.09003 * 109.46863 * 299.99777 * 4 3 2 32 32 H 1.09007 * 109.47391 * 300.00017 * 5 4 3 33 33 H 1.08998 * 109.47341 * 179.97438 * 5 4 3 34 34 H 0.97000 * 119.99601 * 359.97438 * 7 6 5 35 35 H 0.97005 * 120.00029 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.46756 * 180.02562 * 21 20 18 37 37 H 1.09000 * 109.47081 * 299.99933 * 21 20 18 38 38 H 1.08993 * 109.47148 * 60.00050 * 21 20 18 39 39 H 1.09001 * 109.47094 * 179.97438 * 22 6 5 40 40 H 1.09003 * 109.46851 * 299.99815 * 22 6 5 41 41 H 1.09004 * 109.47066 * 300.00004 * 23 3 2 42 42 H 1.08994 * 109.47089 * 59.99928 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 -0.1259 5 6 4.0748 2.8868 -0.1265 6 6 3.6701 3.5714 1.1806 7 7 4.2544 2.8474 2.3123 8 6 4.0307 3.2720 3.5717 9 8 3.3438 4.2569 3.7688 10 6 4.6140 2.5483 4.7024 11 1 5.2240 1.6744 4.5275 12 6 4.3864 2.9929 6.0108 13 7 3.6488 4.0506 6.2225 14 14 5.1371 2.0738 7.4535 15 1 6.6167 2.0764 7.3261 16 1 4.7480 2.7409 8.7219 17 1 4.6433 0.6735 7.4593 18 6 4.1729 4.9921 1.1802 19 8 4.3746 5.5612 0.1337 20 8 4.3966 5.6251 2.3425 21 6 4.8799 6.9922 2.2661 22 6 2.1453 3.5696 1.3064 23 6 1.6353 2.1265 1.3074 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6053 1.9815 -0.8418 30 1 3.8531 0.9570 -1.0573 31 1 3.9995 0.9053 0.7159 32 1 3.6400 3.4255 -0.9685 33 1 5.1611 2.8881 -0.2157 34 1 4.8016 2.0621 2.1552 35 1 3.4908 4.3583 7.1288 36 1 5.0192 7.3851 3.2732 37 1 5.8309 7.0122 1.7339 38 1 4.1527 7.6054 1.7339 39 1 1.8570 4.0569 2.2378 40 1 1.7106 4.1082 0.4644 41 1 0.5490 2.1252 1.3970 42 1 2.0700 1.5874 2.1491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331050758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:08 Heat of formation + Delta-G solvation = -142.659954 kcal Electronic energy + Delta-G solvation = -24372.884319 eV Core-core repulsion = 20931.312248 eV Total energy + Delta-G solvation = -3441.572072 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39864 -38.51081 -36.68033 -35.65735 -34.06846 -32.39939 -31.10752 -30.51261 -28.74407 -26.99281 -25.97364 -24.02762 -22.43777 -21.41415 -20.54675 -19.86112 -18.31090 -17.37193 -16.83696 -16.10837 -15.64464 -15.20021 -15.00958 -14.49132 -14.14727 -13.77724 -13.41345 -13.33626 -13.15066 -12.61150 -12.51971 -12.21441 -12.13437 -11.92930 -11.74959 -11.56894 -11.32095 -11.18915 -11.07015 -10.98089 -10.77901 -10.68921 -10.40715 -10.29718 -10.17357 -10.10117 -9.94587 -9.70475 -9.49670 -8.79907 -7.55536 -7.44554 -6.14210 -4.59506 2.88232 3.16349 3.21856 3.23088 3.55591 4.11497 4.63157 4.70745 4.83889 4.97617 5.00037 5.23045 5.38360 5.40672 5.55217 5.64076 5.69612 5.72315 5.76154 5.80233 5.81904 5.87579 5.99510 6.04921 6.06817 6.09050 6.15031 6.18883 6.28848 6.38077 6.45917 6.50262 6.62017 6.86972 6.95796 7.18270 7.45798 7.82591 8.03224 8.32759 8.56991 9.06297 9.52804 10.63832 10.84161 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013544 B = 0.007245 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.772945 B = 3863.819167 C = 5291.275086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.088 4.088 4 C -0.110 4.110 5 C -0.108 4.108 6 C 0.202 3.798 7 N -0.751 5.751 8 C 0.556 3.444 9 O -0.542 6.542 10 C -0.544 4.544 11 H 0.063 0.937 12 C 0.091 3.909 13 N -0.765 5.765 14 Si 0.902 3.098 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.269 1.269 18 C 0.460 3.540 19 O -0.543 6.543 20 O -0.286 6.286 21 C 0.031 3.969 22 C -0.125 4.125 23 C -0.103 4.103 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.383 0.617 35 H 0.267 0.733 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 -4.748 -9.695 10.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.107 4.107 4 C -0.147 4.147 5 C -0.146 4.146 6 C 0.112 3.888 7 N -0.409 5.409 8 C 0.360 3.640 9 O -0.422 6.422 10 C -0.581 4.581 11 H 0.082 0.918 12 C -0.128 4.128 13 N -0.394 5.394 14 Si 0.727 3.273 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.194 1.194 18 C 0.303 3.697 19 O -0.434 6.434 20 O -0.198 6.198 21 C -0.064 4.064 22 C -0.163 4.163 23 C -0.140 4.140 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.216 0.784 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.141 -3.661 -9.654 10.544 hybrid contribution 0.839 -0.515 0.560 1.133 sum -1.302 -4.176 -9.094 10.091 Atomic orbital electron populations 1.21816 0.96223 1.01083 1.01940 1.21546 0.95681 0.96608 1.01706 1.21234 0.95226 0.95637 0.98579 1.21563 0.95619 0.95692 1.01843 1.21634 1.01248 0.96073 0.95670 1.19680 0.94610 0.85110 0.89375 1.46446 1.56942 1.32622 1.04933 1.18139 0.81162 0.84424 0.80275 1.90593 1.41156 1.27277 1.83158 1.20775 1.33878 1.13585 0.89868 0.91829 1.25612 0.93629 0.94132 0.99466 1.70000 1.28814 1.19255 1.21355 0.86529 0.80040 0.80212 0.80492 1.19462 1.20696 1.19423 1.24669 0.73014 0.90184 0.81815 1.90548 1.50457 1.68631 1.33786 1.87239 1.74477 1.26171 1.31954 1.23144 0.98227 0.82145 1.02911 1.21915 0.92415 0.98087 1.03924 1.21498 0.99988 0.95176 0.97376 0.93090 0.93260 0.92247 0.92490 0.91797 0.91624 0.91921 0.91213 0.90245 0.91465 0.78363 0.92254 0.88713 0.93315 0.93098 0.88150 0.92654 0.92149 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.67 37.15 0.36 -1.26 16 2 C -0.12 -1.33 5.40 -26.73 -0.14 -1.47 16 3 C -0.09 -1.14 2.19 -90.62 -0.20 -1.34 16 4 C -0.11 -1.41 5.03 -26.73 -0.13 -1.55 16 5 C -0.11 -1.67 4.31 -26.73 -0.12 -1.78 16 6 C 0.20 3.88 0.63 -132.97 -0.08 3.79 16 7 N -0.75 -15.73 4.03 -50.08 -0.20 -15.93 16 8 C 0.56 14.53 6.68 -12.99 -0.09 14.44 16 9 O -0.54 -15.67 10.26 -19.31 -0.20 -15.86 16 10 C -0.54 -14.58 9.54 -35.63 -0.34 -14.92 16 11 H 0.06 1.58 7.85 -52.49 -0.41 1.17 16 12 C 0.09 2.44 5.50 -17.36 -0.10 2.35 16 13 N -0.77 -21.90 11.83 55.55 0.66 -21.24 16 14 Si 0.90 19.67 29.56 -169.99 -5.02 14.64 16 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 C 0.46 10.02 6.71 36.01 0.24 10.26 16 19 O -0.54 -11.89 15.84 -18.75 -0.30 -12.18 16 20 O -0.29 -6.75 6.72 -47.37 -0.32 -7.07 16 21 C 0.03 0.58 10.56 101.05 1.07 1.64 16 22 C -0.12 -2.33 4.50 -26.71 -0.12 -2.45 16 23 C -0.10 -1.63 4.80 -26.71 -0.13 -1.76 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.67 6.57 -51.93 -0.34 0.33 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.92 6.86 -51.93 -0.36 0.57 16 32 H 0.08 1.21 7.87 -51.92 -0.41 0.80 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.38 7.16 7.30 -40.82 -0.30 6.86 16 35 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 36 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 38 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 39 H 0.10 2.28 6.16 -51.93 -0.32 1.96 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.90 6.57 -51.93 -0.34 0.56 16 42 H 0.08 1.36 7.61 -51.93 -0.39 0.97 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -31.80 329.70 -6.85 -38.65 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.66 Total: 8.07 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 0.22 Total: 5.96 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.46 Total: -37.17 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.81 Total: -35.12 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.80 -6.85 -38.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331050758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.013 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds