Wall clock time and date at job start Tue Mar 31 2020 06:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47086 * 2 1 4 4 C 1.53001 * 109.47173 * 240.00124 * 2 1 3 5 5 O 1.45197 * 109.47229 * 120.00452 * 2 1 3 6 6 C 1.34228 * 117.00470 * 59.99371 * 5 2 1 7 7 O 1.20831 * 119.99371 * 0.02562 * 6 5 2 8 8 C 1.50694 * 120.00479 * 180.02562 * 6 5 2 9 9 H 1.08996 * 109.58770 * 2.64387 * 8 6 5 10 10 C 1.53195 * 109.70265 * 242.29017 * 8 6 5 11 11 C 1.53040 * 109.31311 * 185.50313 * 10 8 6 12 12 C 1.53045 * 109.53716 * 61.36863 * 11 10 8 13 13 C 1.53199 * 109.31129 * 298.63601 * 12 11 10 14 14 N 1.46921 * 108.77736 * 54.63106 * 13 12 11 15 15 C 1.34776 * 120.63061 * 126.36687 * 14 13 12 16 16 O 1.21690 * 120.00346 * 184.99551 * 15 14 13 17 17 C 1.46369 * 120.00021 * 5.00565 * 15 14 13 18 18 H 1.08000 * 120.00010 * 9.34542 * 17 15 14 19 19 C 1.40043 * 120.00299 * 189.34612 * 17 15 14 20 20 N 1.30669 * 119.99935 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00338 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47499 * 89.99578 * 21 19 17 23 23 H 1.48508 * 109.47080 * 210.00054 * 21 19 17 24 24 H 1.48503 * 109.46668 * 329.99456 * 21 19 17 25 25 H 1.09002 * 109.46982 * 300.00045 * 1 2 3 26 26 H 1.09008 * 109.47263 * 60.00002 * 1 2 3 27 27 H 1.09004 * 109.47215 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46605 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47121 * 299.99828 * 3 2 1 30 30 H 1.08996 * 109.46583 * 59.99968 * 3 2 1 31 31 H 1.09004 * 109.47162 * 300.00169 * 4 2 1 32 32 H 1.08999 * 109.47338 * 59.99986 * 4 2 1 33 33 H 1.08999 * 109.47460 * 180.02562 * 4 2 1 34 34 H 1.08996 * 109.49837 * 305.45771 * 10 8 6 35 35 H 1.09000 * 109.49807 * 65.55796 * 10 8 6 36 36 H 1.09002 * 109.46439 * 301.35098 * 11 10 8 37 37 H 1.08999 * 109.46143 * 181.38401 * 11 10 8 38 38 H 1.08996 * 109.49784 * 178.68676 * 12 11 10 39 39 H 1.08999 * 109.49918 * 58.58051 * 12 11 10 40 40 H 1.09005 * 109.58603 * 294.84993 * 13 12 11 41 41 H 1.08990 * 109.70228 * 174.49018 * 13 12 11 42 42 H 0.97002 * 120.00248 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6533 -1.9685 1.3378 7 8 0.9565 -2.5027 0.5077 8 6 2.1173 -2.7435 2.5440 9 1 2.6918 -2.0894 3.1998 10 6 2.9917 -3.9194 2.0973 11 6 3.3445 -4.7785 3.3137 12 6 2.0623 -5.3385 3.9340 13 6 1.1773 -4.1787 4.4015 14 7 0.9528 -3.2691 3.2697 15 6 -0.2975 -2.9237 2.9038 16 8 -0.4748 -2.2435 1.9104 17 6 -1.4421 -3.3667 3.7013 18 1 -1.2824 -3.8385 4.6596 19 6 -2.7444 -3.1787 3.2218 20 7 -2.9377 -2.6074 2.0626 21 14 -4.2053 -3.7433 4.2399 22 1 -4.6414 -2.6408 5.1339 23 1 -5.3224 -4.1196 3.3366 24 1 -3.8133 -4.9187 5.0585 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9562 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2491 34 1 2.4468 -4.5228 1.3714 35 1 3.9067 -3.5401 1.6423 36 1 3.8676 -4.1683 4.0500 37 1 3.9870 -5.6022 3.0025 38 1 2.3157 -5.9691 4.7862 39 1 1.5261 -5.9285 3.1908 40 1 1.6752 -3.6414 5.2088 41 1 0.2214 -4.5651 4.7548 42 1 -3.8397 -2.4775 1.7302 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331063356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:07 Heat of formation + Delta-G solvation = -112.499641 kcal Electronic energy + Delta-G solvation = -24693.260940 eV Core-core repulsion = 21252.996718 eV Total energy + Delta-G solvation = -3440.264222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.15562 -38.38068 -35.83158 -35.62950 -33.30601 -32.54753 -31.66316 -30.80046 -27.00495 -26.66816 -26.48532 -24.85028 -23.37429 -21.43095 -20.58336 -19.07838 -18.45755 -16.87192 -16.14470 -15.70039 -15.46592 -15.02385 -14.56092 -14.25861 -13.96903 -13.77532 -13.58447 -13.17067 -13.02790 -12.86297 -12.47588 -12.21446 -12.01907 -11.75651 -11.46102 -11.33238 -11.19213 -11.06443 -11.06351 -10.90452 -10.68186 -10.65401 -10.54221 -10.42288 -10.27101 -10.21138 -9.85248 -9.49292 -8.84761 -8.77484 -7.34915 -7.19158 -6.15891 -4.62363 3.13097 3.19653 3.22595 3.27357 3.56759 4.08862 4.51365 4.62281 5.14789 5.20413 5.23164 5.28089 5.30095 5.48372 5.56294 5.62944 5.69511 5.80371 5.81859 5.94654 5.99571 6.06102 6.11317 6.17256 6.22209 6.23761 6.31075 6.37104 6.45981 6.52453 6.54143 6.62740 6.77270 6.81133 7.42919 7.44086 7.51768 7.58462 8.09363 8.29700 9.00554 9.08600 9.38082 10.58140 10.76559 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014154 B = 0.008012 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.706000 B = 3493.718810 C = 5084.753049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.124 3.876 3 C -0.137 4.137 4 C -0.178 4.178 5 O -0.366 6.366 6 C 0.476 3.524 7 O -0.458 6.458 8 C 0.164 3.836 9 H 0.071 0.929 10 C -0.122 4.122 11 C -0.111 4.111 12 C -0.138 4.138 13 C 0.126 3.874 14 N -0.632 5.632 15 C 0.550 3.450 16 O -0.537 6.537 17 C -0.541 4.541 18 H 0.071 0.929 19 C 0.089 3.911 20 N -0.762 5.762 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.265 1.265 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.113 0.887 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.043 0.957 41 H 0.097 0.903 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.637 0.471 0.465 10.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.087 3.913 3 C -0.194 4.194 4 C -0.235 4.235 5 O -0.286 6.286 6 C 0.317 3.683 7 O -0.342 6.342 8 C 0.058 3.942 9 H 0.089 0.911 10 C -0.160 4.160 11 C -0.149 4.149 12 C -0.176 4.176 13 C 0.002 3.998 14 N -0.374 5.374 15 C 0.356 3.644 16 O -0.418 6.418 17 C -0.578 4.578 18 H 0.089 0.911 19 C -0.131 4.131 20 N -0.390 5.390 21 Si 0.729 3.271 22 H -0.198 1.198 23 H -0.206 1.206 24 H -0.190 1.190 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.132 0.868 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.115 0.885 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.144 0.791 -0.547 10.189 hybrid contribution -0.804 -0.268 0.542 1.006 sum 9.339 0.524 -0.005 9.354 Atomic orbital electron populations 1.22407 0.92896 1.07259 1.00446 1.21921 0.95314 0.91009 0.83026 1.21818 1.01189 0.93995 1.02416 1.22448 1.00440 1.03645 0.96942 1.86407 1.70637 1.26486 1.45049 1.22470 0.77559 0.80426 0.87813 1.90564 1.29861 1.69794 1.43946 1.20238 0.89490 0.93539 0.90928 0.91074 1.21842 0.98718 0.96727 0.98742 1.21441 0.97546 0.98836 0.97040 1.21982 0.96407 0.98601 1.00640 1.21447 1.00446 0.89676 0.88225 1.48309 1.04320 1.51301 1.33471 1.18386 0.80407 0.80623 0.84949 1.90708 1.82301 1.41582 1.27188 1.20878 0.89407 1.42409 1.05086 0.91099 1.25674 0.99660 0.93232 0.94522 1.70001 1.21942 1.30911 1.16187 0.86423 0.80965 0.79556 0.80114 1.19831 1.20560 1.18954 0.92648 0.93502 0.86801 0.92315 0.91135 0.91878 0.89719 0.91986 0.93004 0.90637 0.91673 0.92069 0.92110 0.91747 0.91519 0.93840 0.88491 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 7.96 37.16 0.30 -3.41 16 2 C 0.12 2.31 1.13 -90.62 -0.10 2.21 16 3 C -0.14 -1.99 8.85 37.16 0.33 -1.66 16 4 C -0.18 -2.99 8.37 37.16 0.31 -2.68 16 5 O -0.37 -7.74 9.89 -39.25 -0.39 -8.13 16 6 C 0.48 10.81 4.31 36.00 0.16 10.97 16 7 O -0.46 -11.78 9.78 -27.23 -0.27 -12.04 16 8 C 0.16 3.29 3.33 -68.75 -0.23 3.07 16 9 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 10 C -0.12 -1.99 5.34 -26.61 -0.14 -2.13 16 11 C -0.11 -1.50 5.88 -26.69 -0.16 -1.66 16 12 C -0.14 -2.05 6.08 -26.61 -0.16 -2.21 16 13 C 0.13 2.27 6.30 -3.71 -0.02 2.25 16 14 N -0.63 -14.23 2.97 -168.19 -0.50 -14.73 16 15 C 0.55 15.27 7.43 -12.99 -0.10 15.17 16 16 O -0.54 -16.19 8.58 -20.41 -0.18 -16.36 16 17 C -0.54 -14.89 8.71 -35.64 -0.31 -15.20 16 18 H 0.07 1.78 5.93 -52.49 -0.31 1.47 16 19 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 20 N -0.76 -22.45 11.87 55.55 0.66 -21.79 16 21 Si 0.90 20.02 29.56 -169.99 -5.02 15.00 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 27 H 0.11 3.00 4.78 -51.93 -0.25 2.75 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.67 5.89 -51.93 -0.31 1.36 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.40 8.02 -51.93 -0.42 0.98 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 1.86 5.47 -51.93 -0.28 1.57 16 42 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 LS Contribution 325.52 15.07 4.91 4.91 Total: -1.00 -33.25 325.52 -7.63 -40.88 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.62 Total: 5.22 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -0.23 Total: 7.06 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.16 Total: -36.52 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.83 Total: -36.54 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.25 -7.63 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331063356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.617 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds