Wall clock time and date at job start Tue Mar 31 2020 06:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47016 * 2 1 4 4 C 1.52996 * 109.46945 * 239.99844 * 2 1 3 5 5 O 1.45200 * 109.47141 * 120.00008 * 2 1 3 6 6 C 1.34232 * 117.00196 * 59.99646 * 5 2 1 7 7 O 1.20831 * 119.99800 * 0.02562 * 6 5 2 8 8 C 1.50699 * 120.00093 * 179.97438 * 6 5 2 9 9 H 1.08995 * 109.58512 * 350.04806 * 8 6 5 10 10 C 1.53192 * 109.58385 * 110.33277 * 8 6 5 11 11 C 1.53044 * 109.30998 * 174.42219 * 10 8 6 12 12 C 1.53034 * 109.53929 * 298.63200 * 11 10 8 13 13 C 1.53200 * 109.31108 * 61.36769 * 12 11 10 14 14 N 1.46923 * 109.58357 * 229.62135 * 8 6 5 15 15 C 1.34775 * 120.63454 * 6.57981 * 14 8 6 16 16 O 1.21688 * 119.99536 * 5.32055 * 15 14 8 17 17 C 1.46380 * 119.99890 * 185.31337 * 15 14 8 18 18 H 1.07997 * 120.00061 * 9.86887 * 17 15 14 19 19 C 1.40045 * 119.99664 * 189.86926 * 17 15 14 20 20 N 1.30679 * 120.00250 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 119.99828 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46978 * 60.00312 * 21 19 17 23 23 H 1.48507 * 109.46955 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47460 * 300.00300 * 21 19 17 25 25 H 1.09002 * 109.46993 * 299.99879 * 1 2 3 26 26 H 1.08995 * 109.47250 * 59.99906 * 1 2 3 27 27 H 1.08999 * 109.47034 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46762 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47188 * 300.00132 * 3 2 1 30 30 H 1.09002 * 109.47141 * 60.00211 * 3 2 1 31 31 H 1.08999 * 109.47341 * 299.99918 * 4 2 1 32 32 H 1.09005 * 109.46954 * 60.00179 * 4 2 1 33 33 H 1.09002 * 109.46705 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.49784 * 54.47079 * 10 8 6 35 35 H 1.09002 * 109.52377 * 294.38496 * 10 8 6 36 36 H 1.09000 * 109.45875 * 58.65874 * 11 10 8 37 37 H 1.09005 * 109.45842 * 178.61225 * 11 10 8 38 38 H 1.08996 * 109.49945 * 181.31568 * 12 11 10 39 39 H 1.09002 * 109.49737 * 301.41969 * 12 11 10 40 40 H 1.09003 * 109.58722 * 185.58399 * 13 12 11 41 41 H 1.08993 * 109.58659 * 65.15169 * 13 12 11 42 42 H 0.96998 * 119.99720 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9566 -2.5028 0.5079 8 6 2.1183 -2.7437 2.5437 9 1 2.8699 -2.1662 3.0818 10 6 0.9271 -3.0221 3.4658 11 6 1.3775 -3.9265 4.6154 12 6 1.8748 -5.2600 4.0529 13 6 3.0768 -5.0069 3.1373 14 7 2.6929 -4.0256 2.1133 15 6 2.8643 -4.2964 0.8042 16 8 2.6332 -3.4406 -0.0294 17 6 3.3285 -5.6200 0.3853 18 1 3.3812 -6.4257 1.1025 19 6 3.7042 -5.8413 -0.9455 20 7 3.6408 -4.8662 -1.8132 21 14 4.2959 -7.5305 -1.4803 22 1 3.2240 -8.5297 -1.2392 23 1 4.6309 -7.5025 -2.9269 24 1 5.5035 -7.9020 -0.7001 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 0.1377 -3.5178 2.9008 35 1 0.5507 -2.0818 3.8687 36 1 2.1838 -3.4408 5.1650 37 1 0.5376 -4.1061 5.2866 38 1 2.1735 -5.9122 4.8734 39 1 1.0764 -5.7345 3.4823 40 1 3.3728 -5.9395 2.6568 41 1 3.9076 -4.6162 3.7247 42 1 3.9014 -5.0195 -2.7349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331063357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:10 Heat of formation + Delta-G solvation = -110.162896 kcal Electronic energy + Delta-G solvation = -24672.198386 eV Core-core repulsion = 21232.035492 eV Total energy + Delta-G solvation = -3440.162893 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.18149 -38.39229 -35.88392 -35.58946 -33.32616 -32.52669 -31.65017 -30.81952 -27.02018 -26.68261 -26.47715 -24.86489 -23.35677 -21.45767 -20.59256 -19.07247 -18.44102 -16.89140 -16.18339 -15.72392 -15.46370 -15.01783 -14.58368 -14.24751 -13.96843 -13.78243 -13.61703 -13.17569 -13.04696 -12.89064 -12.49720 -12.18937 -12.03092 -11.79861 -11.45698 -11.32715 -11.18086 -11.10191 -11.04634 -10.94053 -10.73390 -10.63447 -10.57950 -10.41731 -10.27496 -10.20601 -9.81675 -9.50077 -8.85099 -8.74892 -7.39559 -7.13660 -6.14663 -4.59869 3.15701 3.20124 3.21829 3.26630 3.54761 4.10190 4.49340 4.65888 5.13302 5.19042 5.21695 5.26322 5.28265 5.46687 5.55065 5.62889 5.70016 5.79779 5.80553 5.93925 5.98306 6.06242 6.09964 6.16386 6.21231 6.22180 6.30894 6.35071 6.43142 6.50356 6.53445 6.60352 6.76317 6.78894 7.42047 7.45426 7.49190 7.57756 8.11302 8.30663 9.00296 9.07879 9.40121 10.60212 10.78651 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.007904 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.405487 B = 3541.438736 C = 5144.352115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.123 3.877 3 C -0.137 4.137 4 C -0.174 4.174 5 O -0.366 6.366 6 C 0.473 3.527 7 O -0.455 6.455 8 C 0.165 3.835 9 H 0.073 0.927 10 C -0.122 4.122 11 C -0.111 4.111 12 C -0.138 4.138 13 C 0.125 3.875 14 N -0.633 5.633 15 C 0.553 3.447 16 O -0.537 6.537 17 C -0.541 4.541 18 H 0.070 0.930 19 C 0.090 3.910 20 N -0.766 5.766 21 Si 0.905 3.095 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.269 1.269 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.044 0.956 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.047 5.591 8.873 10.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.087 3.913 3 C -0.194 4.194 4 C -0.231 4.231 5 O -0.285 6.285 6 C 0.314 3.686 7 O -0.339 6.339 8 C 0.059 3.941 9 H 0.091 0.909 10 C -0.161 4.161 11 C -0.149 4.149 12 C -0.177 4.177 13 C 0.002 3.998 14 N -0.375 5.375 15 C 0.359 3.641 16 O -0.418 6.418 17 C -0.577 4.577 18 H 0.088 0.912 19 C -0.130 4.130 20 N -0.394 5.394 21 Si 0.730 3.270 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.194 1.194 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.131 0.869 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.062 0.938 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.373 5.998 7.871 10.455 hybrid contribution 0.355 -0.865 -0.312 0.986 sum -3.018 5.133 7.559 9.622 Atomic orbital electron populations 1.22447 0.95200 1.04518 1.01325 1.21928 0.93377 0.91399 0.84590 1.21816 1.02013 0.93676 1.01906 1.22411 1.01660 1.04790 0.94237 1.86407 1.71262 1.26308 1.44546 1.22516 0.79547 0.79745 0.86817 1.90580 1.35604 1.67585 1.40084 1.20193 0.95673 0.87322 0.90946 0.90937 1.21846 0.97546 1.00026 0.96645 1.21439 1.00513 0.96142 0.96763 1.21992 0.99786 0.96767 0.99164 1.21462 0.94519 0.94268 0.89581 1.48288 1.67779 1.14140 1.07271 1.18288 0.77585 0.89620 0.78601 1.90677 1.53435 1.47852 1.49844 1.20829 1.47141 0.94846 0.94917 0.91159 1.25664 0.93644 0.97429 0.96269 1.69982 1.34705 1.31628 1.03126 0.86483 0.79621 0.83081 0.77849 1.19346 1.20665 1.19366 0.92971 0.91961 0.89737 0.91858 0.91122 0.92286 0.86938 0.93400 0.92587 0.90824 0.91550 0.92028 0.92107 0.91754 0.91530 0.88435 0.93777 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.37 37.16 0.31 -2.67 16 2 C 0.12 2.28 1.13 -90.62 -0.10 2.18 16 3 C -0.14 -1.97 8.85 37.16 0.33 -1.64 16 4 C -0.17 -3.70 8.10 37.16 0.30 -3.39 16 5 O -0.37 -7.66 9.89 -39.26 -0.39 -8.05 16 6 C 0.47 10.71 4.42 36.01 0.16 10.87 16 7 O -0.46 -11.71 9.59 -27.27 -0.26 -11.98 16 8 C 0.16 3.30 3.35 -68.75 -0.23 3.07 16 9 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 10 C -0.12 -1.97 5.35 -26.61 -0.14 -2.11 16 11 C -0.11 -1.48 5.88 -26.69 -0.16 -1.64 16 12 C -0.14 -2.03 6.08 -26.61 -0.16 -2.20 16 13 C 0.13 2.27 6.35 -3.70 -0.02 2.24 16 14 N -0.63 -14.28 2.97 -168.18 -0.50 -14.78 16 15 C 0.55 15.43 7.21 -12.99 -0.09 15.33 16 16 O -0.54 -16.31 8.90 -20.51 -0.18 -16.49 16 17 C -0.54 -14.97 8.80 -35.63 -0.31 -15.29 16 18 H 0.07 1.78 5.76 -52.49 -0.30 1.47 16 19 C 0.09 2.47 5.50 -17.36 -0.10 2.38 16 20 N -0.77 -22.61 11.88 55.55 0.66 -21.95 16 21 Si 0.90 20.13 29.56 -169.99 -5.02 15.10 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.66 5.89 -51.93 -0.31 1.35 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.11 2.95 4.80 -51.93 -0.25 2.70 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.10 1.86 5.34 -51.93 -0.28 1.59 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 LS Contribution 325.71 15.07 4.91 4.91 Total: -1.00 -33.43 325.71 -7.62 -41.05 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.61 Total: 5.04 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -0.22 Total: 7.15 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.16 Total: -36.73 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -0.83 Total: -36.51 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.43 -7.62 -41.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331063357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.114 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds